View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9324-LTR4-TNT-insertion-8 (Length: 230)

Name: F9324-LTR4-TNT-insertion-8
Description: F9324-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9324-LTR4-TNT-insertion-8
F9324-LTR4-TNT-insertion-8
[»] chr4 (4 HSPs)
chr4 (10-220)||(34967132-34967342)
chr4 (10-220)||(9117484-9117693)
chr4 (10-220)||(54207277-54207486)
chr4 (10-220)||(27742679-27742888)
[»] chr3 (4 HSPs)
chr3 (10-220)||(46920147-46920356)
chr3 (10-220)||(11031567-11031776)
chr3 (10-220)||(18319645-18319854)
chr3 (10-192)||(52126254-52126437)
[»] chr7 (2 HSPs)
chr7 (10-220)||(16849885-16850094)
chr7 (10-192)||(31738805-31738988)
[»] chr1 (2 HSPs)
chr1 (10-220)||(38007040-38007249)
chr1 (10-192)||(51083400-51083583)
[»] chr8 (2 HSPs)
chr8 (10-220)||(11465623-11465832)
chr8 (10-220)||(3428520-3428729)


Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 220
Target Start/End: Original strand, 34967132 - 34967342
Alignment:
Q  10 tatgaggatgggaatgcactttctcatgtttggtagaaggtaaaagaaaaatatacctgggaacaaattatacccaggaaaatttttaacccatgacctc 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  34967132 tatgaggatgggaatgcactttctcatgtttggtagaaggtaaaagaaaaatatacctgggaacaaattatacccaggaaaatttttaacccatgatctc 34967231  T
Q  110 cccatttttattcccatgaaaaaggagttgggatgttttattcctaagaatgacatttgccttgctacatgaaaaccccactaccaaccatgttttttca 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34967232 cccatttttattcccatgaaaaaggagttgggatgttttattcctaagaatgacatttgccttgctacatgaaaaccccactaccaaccatgttttttca 34967331  T
Q  210 actgccaatta 220  Q
    |||||||||||    
T  34967332 actgccaatta 34967342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 10 - 220
Target Start/End: Original strand, 9117484 - 9117693
Alignment:
Q  10 tatgaggatgggaatgcactttctcatgtttggtagaaggtaaaagaaaaatatacctgggaacaaattatacccaggaaaatttttaacccatgacctc 109  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  9117484 tatgaggatgggaatgcactttcccatgtttggtagaaggtaaaagaaaaatatacctgggaacaaattatacccaggaaaatttttaacccatgatctc 9117583  T
Q  110 cccatttttattcccatgaaaaaggagttgggatgttttattcctaagaatgacatttgccttgctacatgaaaaccccactaccaaccatgttttttca 209  Q
    || |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  9117584 cctatttttattcccatgaaaaaggagttggaatgttttattcctaggaatgacatttgccttgctacatgaaaaccccactacc-accatgttttttca 9117682  T
Q  210 actgccaatta 220  Q
    |||||||||||    
T  9117683 actgccaatta 9117693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 10 - 220
Target Start/End: Original strand, 54207277 - 54207486
Alignment:
Q  10 tatgaggatgggaatgcactttctcatgtttggtagaaggtaaaagaaaaatatacctgggaacaaattatacccaggaaaatttttaacccatgacctc 109  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  54207277 tatgaggatgggaatgcactttcccatgtttggtagaaggtaaaagaaaaatatacctgggaacaaattatacccaggaaaatttttaacccatgatctc 54207376  T
Q  110 cccatttttattcccatgaaaaaggagttgggatgttttattcctaagaatgacatttgccttgctacatgaaaaccccactaccaaccatgttttttca 209  Q
    || |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  54207377 cctatttttattcccatgaaaaaggagttggaatgttttattcctaggaatgacatttgccttgctacatgaaaaccccactacc-accatgttttttca 54207475  T
Q  210 actgccaatta 220  Q
    |||||||||||    
T  54207476 actgccaatta 54207486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 10 - 220
Target Start/End: Complemental strand, 27742888 - 27742679
Alignment:
Q  10 tatgaggatgggaatgcactttctcatgtttggtagaaggtaaaagaaaaatatacctgggaacaaattatacccaggaaaatttttaacccatgacctc 109  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||    
T  27742888 tatgaggatgggaatgcactttcccatgtttggtagaaggtaaaagaaaaatatacctgggaacagattatacccatgaaaatttttaacccatgatctc 27742789  T
Q  110 cccatttttattcccatgaaaaaggagttgggatgttttattcctaagaatgacatttgccttgctacatgaaaaccccactaccaaccatgttttttca 209  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  27742788 cccatttttattcccatgaaaaaggagttggaatgttttattcctaagaatgacatttgccttgctacatgaaaaccccactacc-accatgtattttca 27742690  T
Q  210 actgccaatta 220  Q
    ||| |||||||    
T  27742689 actaccaatta 27742679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 10 - 220
Target Start/End: Original strand, 46920147 - 46920356
Alignment:
Q  10 tatgaggatgggaatgcactttctcatgtttggtagaaggtaaaagaaaaatatacctgggaacaaattatacccaggaaaatttttaacccatgacctc 109  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  46920147 tatgaggatgggaatgcactttcccatgtttggtagaaggtaaaagaaaaatatacctgggaacaaattatacccaggaaaatttttaacccatgatctc 46920246  T
Q  110 cccatttttattcccatgaaaaaggagttgggatgttttattcctaagaatgacatttgccttgctacatgaaaaccccactaccaaccatgttttttca 209  Q
    || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  46920247 cctatttttattcccatgaaaaaggagttggaatgttttattcctaagaatgacatttgccttgctacatgaaaaccccactacc-accatgttttttca 46920345  T
Q  210 actgccaatta 220  Q
    |||||||||||    
T  46920346 actgccaatta 46920356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 10 - 220
Target Start/End: Complemental strand, 11031776 - 11031567
Alignment:
Q  10 tatgaggatgggaatgcactttctcatgtttggtagaaggtaaaagaaaaatatacctgggaacaaattatacccaggaaaatttttaacccatgacctc 109  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  11031776 tatgaggatgggaatgcactttcccatgtttggtagaaggtaaaagaaaaatatacctgggaacaaattatacccaggaaaatttttaacccatgatctc 11031677  T
Q  110 cccatttttattcccatgaaaaaggagttgggatgttttattcctaagaatgacatttgccttgctacatgaaaaccccactaccaaccatgttttttca 209  Q
    || |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11031676 cctatttttattcccatgaaaaaggagttggaatgttttattcctaggaatgacatttgccttgctacatgaaaaccccactacc-accatgttttttca 11031578  T
Q  210 actgccaatta 220  Q
    |||||||||||    
T  11031577 actgccaatta 11031567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 10 - 220
Target Start/End: Original strand, 18319645 - 18319854
Alignment:
Q  10 tatgaggatgggaatgcactttctcatgtttggtagaaggtaaaagaaaaatatacctgggaacaaattatacccaggaaaatttttaacccatgacctc 109  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||    
T  18319645 tatgaggatgggaatgcactttcccatgtttggtagaaggtaaaagaaaaatatacctgggaacaaattatacccaggaaattttttaacccatgatctc 18319744  T
Q  110 cccatttttattcccatgaaaaaggagttgggatgttttattcctaagaatgacatttgccttgctacatgaaaaccccactaccaaccatgttttttca 209  Q
    || |||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  18319745 cctatttttattcccatgaaaaaggagttggaatgttttattcctagaaatgacatttgccttgctacatgaaaaccccactacc-accatgttttttca 18319843  T
Q  210 actgccaatta 220  Q
    |||||||||||    
T  18319844 actgccaatta 18319854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 10 - 192
Target Start/End: Complemental strand, 52126437 - 52126254
Alignment:
Q  10 tatgaggatgggaatgcactttctcatgtttggtagaaggtaaaagaaaaatatacctgggaacaaattatacccaggaaaatttttaacccatgacctc 109  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||     
T  52126437 tatgaggatgggaatgcactttcccatgtttggtagaaggtacaagaaaaatatacctggaaacaaattatacccaggaaaatttttaacccatgatctt 52126338  T
Q  110 cccatttttattcccatgaaaaaggagttgggatg-ttttattcctaagaatgacatttgccttgctacatgaaaaccccacta 192  Q
    ||||||||||||||||||||| ||||||||| ||| ||||||||||| |||||||   ||||||||||| ||||||||||||||    
T  52126337 cccatttttattcccatgaaagaggagttggaatgtttttattcctaggaatgactagtgccttgctacttgaaaaccccacta 52126254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 10 - 220
Target Start/End: Complemental strand, 16850094 - 16849885
Alignment:
Q  10 tatgaggatgggaatgcactttctcatgtttggtagaaggtaaaagaaaaatatacctgggaacaaattatacccaggaaaatttttaacccatgacctc 109  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  16850094 tatgaggatgggaatgcactttcccatgtttggtagaaggtaaaagaaaaatatacctgggaacaaattatacccaggaaaatttttaacccatgatctc 16849995  T
Q  110 cccatttttattcccatgaaaaaggagttgggatgttttattcctaagaatgacatttgccttgctacatgaaaaccccactaccaaccatgttttttca 209  Q
    || |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  16849994 cctatttttattcccatgaaaaaggagttggaatgttttattcctaggaatgacatttgccttgctacatgaaaaccccactacc-accatgttttttca 16849896  T
Q  210 actgccaatta 220  Q
    |||||||||||    
T  16849895 actgccaatta 16849885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 10 - 192
Target Start/End: Complemental strand, 31738988 - 31738805
Alignment:
Q  10 tatgaggatgggaatgcactttctcatgtttggtagaaggtaaaagaaaaatatacctgggaacaaattatacccaggaaaatttttaacccatgacctc 109  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||    
T  31738988 tatgaggatgggaatgcactttcccatgtttggtagaaggtaaaagaaaaatatacctgggaacaaattatacccaggaaattttttaacccatgatctc 31738889  T
Q  110 cccatttttattcccatgaaaaaggagttgggat-gttttattcctaagaatgacatttgccttgctacatgaaaaccccacta 192  Q
    ||||||||||||||||||||| ||||||||| ||  ||||||||||| |||||||  || ||||||||| ||||||||||||||    
T  31738888 cccatttttattcccatgaaagaggagttggaatatttttattcctaggaatgactattcccttgctacgtgaaaaccccacta 31738805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 10 - 220
Target Start/End: Original strand, 38007040 - 38007249
Alignment:
Q  10 tatgaggatgggaatgcactttctcatgtttggtagaaggtaaaagaaaaatatacctgggaacaaattatacccaggaaaatttttaacccatgacctc 109  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  38007040 tatgaggatgggaatgcactttcccatgtttggtagaaggtaaaagaaaaatatacctgggaacaaattatacccaggaaaatttttaacccatgatctc 38007139  T
Q  110 cccatttttattcccatgaaaaaggagttgggatgttttattcctaagaatgacatttgccttgctacatgaaaaccccactaccaaccatgttttttca 209  Q
    || |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  38007140 cctatttttattcccatgaaaaaggagttggaatgttttattcctaggaatgacatttgccttgctacatgaaaaccccactacc-accatgttttttca 38007238  T
Q  210 actgccaatta 220  Q
    |||||||||||    
T  38007239 actgccaatta 38007249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 10 - 192
Target Start/End: Original strand, 51083400 - 51083583
Alignment:
Q  10 tatgaggatgggaatgcactttctcatgtttggtagaaggtaaaagaaaaatatacctgggaacaaattatacccaggaaaatttttaacccatgacctc 109  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||    
T  51083400 tatgaggatgggaatgcactttcccatgtttggtagaaggtaaaagaaaaatatacttgggaacaaattatacccaggaaaatttttaacccatgatctc 51083499  T
Q  110 cccatttttattcccatgaaaaaggagttgggatg-ttttattcctaagaatgacatttgccttgctacatgaaaaccccacta 192  Q
     |||||||||||||||||||| ||||||| | ||| ||||||||||| |||||||  |||||||||||| ||||||||||||||    
T  51083500 tccatttttattcccatgaaagaggagtttgaatgtttttattcctaggaatgactattgccttgctacgtgaaaaccccacta 51083583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 10 - 220
Target Start/End: Original strand, 11465623 - 11465832
Alignment:
Q  10 tatgaggatgggaatgcactttctcatgtttggtagaaggtaaaagaaaaatatacctgggaacaaattatacccaggaaaatttttaacccatgacctc 109  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  11465623 tatgaggatgggaatgcactttcccatgtttggtagaaggtaaaagaaaaatatacctgggaacaaattatacccatgaaaatttttaacccatgatctc 11465722  T
Q  110 cccatttttattcccatgaaaaaggagttgggatgttttattcctaagaatgacatttgccttgctacatgaaaaccccactaccaaccatgttttttca 209  Q
    || |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11465723 cctatttttattcccatgaaaaaggagttggaatgttttattcctaggaatgacatttgccttgctacatgaaaaccccactacc-accatgttttttca 11465821  T
Q  210 actgccaatta 220  Q
    |||||||||||    
T  11465822 actgccaatta 11465832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 10 - 220
Target Start/End: Original strand, 3428520 - 3428729
Alignment:
Q  10 tatgaggatgggaatgcactttctcatgtttggtagaaggtaaaagaaaaatatacctgggaacaaattatacccaggaaaatttttaacccatgacctc 109  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  3428520 tatgaggatgggaatgcactttcccatgtttggtagaaggtaaaagaaaaatatacctgggaacaaattatacccaggaaaatttttaacctatgatctc 3428619  T
Q  110 cccatttttattcccatgaaaaaggagttgggatgttttattcctaagaatgacatttgccttgctacatgaaaaccccactaccaaccatgttttttca 209  Q
    || |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  3428620 cctatttttattcccatgaaaaaggagttggaatgttttattcctaggaatgacatttgccttgctacatgaaaaccccactacc-accatgttttttca 3428718  T
Q  210 actgccaatta 220  Q
    ||| |||||||    
T  3428719 actaccaatta 3428729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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