View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9324-LTR4-TNT-insertion-9 (Length: 103)
Name: F9324-LTR4-TNT-insertion-9
Description: F9324-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9324-LTR4-TNT-insertion-9 |
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Alignment Details
Target: chr8 (Bit Score: 88; Significance: 8e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 8e-43
Query Start/End: Original strand, 9 - 96
Target Start/End: Complemental strand, 5530764 - 5530677
Alignment:
| Q |
9 |
caaatacacacacgtgctacgcatcccaaacagtagatattctcataactcaatcatttgttcttgcaagtctttactcatggaattg |
96 |
Q |
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| T |
5530764 |
caaatacacacacgtgctacgcatcccaaacagtagatattctcataactcaatcatttgttcttgcaagtctttactcatggaattg |
5530677 |
T |
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Target: chr2 (Bit Score: 68; Significance: 7e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 7e-31
Query Start/End: Original strand, 9 - 96
Target Start/End: Complemental strand, 42136024 - 42135937
Alignment:
| Q |
9 |
caaatacacacacgtgctacgcatcccaaacagtagatattctcataactcaatcatttgttcttgcaagtctttactcatggaattg |
96 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42136024 |
caaaaacacacacgtgctacacatcccaaacagtagatatgctcgtaactcaattatttgttcttgcaagtctttactcatggaattg |
42135937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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