View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9325-LTR4-TNT-insertion-2 (Length: 128)
Name: F9325-LTR4-TNT-insertion-2
Description: F9325-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9325-LTR4-TNT-insertion-2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 111; Significance: 2e-56; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 2e-56
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 35694441 - 35694331
Alignment:
| Q |
8 |
tggagggggtgcaattttgtttatgggtcttatagttgtatcgttgatcaactctcggcttaaaaaagatgactacgagtagagttaattgggttattat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35694441 |
tggagggggtgcaattttgtttatgggtcttatagttgtatcgttgatcaactctcggcttaaaaaagatgactacgagtagagttaattgggttattat |
35694342 |
T |
|
| Q |
108 |
gtaactaatta |
118 |
Q |
| |
|
||||||||||| |
|
|
| T |
35694341 |
gtaactaatta |
35694331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 278 times since January 2019
Visitors: 1024