View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9325-LTR4-TNT-insertion-3 (Length: 655)

Name: F9325-LTR4-TNT-insertion-3
Description: F9325-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9325-LTR4-TNT-insertion-3
F9325-LTR4-TNT-insertion-3
[»] chr4 (33 HSPs)
chr4 (10-646)||(1548002-1548636)
chr4 (342-637)||(1552673-1552973)
chr4 (191-548)||(546898-547255)
chr4 (438-548)||(8187095-8187205)
chr4 (433-540)||(1524485-1524592)
chr4 (438-540)||(553472-553574)
chr4 (376-585)||(3438509-3438716)
chr4 (345-537)||(55908637-55908831)
chr4 (438-538)||(8184034-8184134)
chr4 (438-540)||(1513411-1513513)
chr4 (359-540)||(570344-570524)
chr4 (438-540)||(12121461-12121563)
chr4 (438-519)||(1519146-1519227)
chr4 (439-538)||(558493-558592)
chr4 (443-537)||(659707-659799)
chr4 (438-548)||(7307845-7307955)
chr4 (452-540)||(1508021-1508109)
chr4 (433-540)||(1537766-1537873)
chr4 (305-505)||(1600447-1600647)
chr4 (356-604)||(53761692-53761939)
chr4 (432-536)||(532186-532290)
chr4 (438-540)||(7225887-7225989)
chr4 (461-507)||(12116602-12116648)
chr4 (489-638)||(566084-566233)
chr4 (459-540)||(640908-640989)
chr4 (456-547)||(55505130-55505221)
chr4 (378-478)||(644885-644984)
chr4 (355-478)||(21834297-21834422)
chr4 (438-485)||(1489365-1489412)
chr4 (438-504)||(1545802-1545868)
chr4 (227-329)||(21834174-21834276)
chr4 (567-629)||(21834439-21834501)
chr4 (507-540)||(370913-370946)
[»] chr8 (10 HSPs)
chr8 (227-540)||(18315066-18315379)
chr8 (438-637)||(27922404-27922603)
chr8 (280-540)||(32151294-32151551)
chr8 (346-526)||(17636307-17636493)
chr8 (196-327)||(17627821-17627952)
chr8 (378-540)||(28246240-28246399)
chr8 (450-540)||(34936179-34936269)
chr8 (438-534)||(17628018-17628114)
chr8 (433-484)||(21235607-21235658)
chr8 (498-538)||(44736530-44736570)
[»] chr3 (10 HSPs)
chr3 (191-640)||(51113541-51113987)
chr3 (356-589)||(13470652-13470887)
chr3 (376-545)||(51120836-51121004)
chr3 (420-619)||(51764427-51764625)
chr3 (200-329)||(514494-514623)
chr3 (453-521)||(27005791-27005859)
chr3 (438-540)||(1657244-1657346)
chr3 (266-327)||(51764275-51764336)
chr3 (440-497)||(33714861-33714918)
chr3 (453-493)||(36811046-36811086)
[»] chr5 (6 HSPs)
chr5 (438-627)||(32267381-32267570)
chr5 (441-640)||(41901542-41901741)
chr5 (441-540)||(37937880-37937979)
chr5 (378-585)||(41889499-41889705)
chr5 (376-540)||(20478025-20478188)
chr5 (440-538)||(38267562-38267660)
[»] chr6 (29 HSPs)
chr6 (355-540)||(6432154-6432341)
chr6 (355-629)||(6394768-6395044)
chr6 (355-538)||(6402855-6403040)
chr6 (355-538)||(7119152-7119337)
chr6 (355-538)||(7131630-7131815)
chr6 (417-540)||(6409999-6410121)
chr6 (459-589)||(6585262-6585392)
chr6 (257-540)||(6426504-6426784)
chr6 (355-540)||(6415959-6416146)
chr6 (360-588)||(19632384-19632611)
chr6 (438-540)||(6423210-6423312)
chr6 (438-540)||(11936279-11936381)
chr6 (438-540)||(11948259-11948361)
chr6 (355-627)||(7994101-7994375)
chr6 (461-629)||(14818287-14818454)
chr6 (355-537)||(6594525-6594709)
chr6 (440-534)||(6596934-6597028)
chr6 (440-538)||(14802331-14802429)
chr6 (375-604)||(6589265-6589493)
chr6 (433-525)||(12102274-12102366)
chr6 (450-526)||(28935056-28935132)
chr6 (433-540)||(9411348-9411455)
chr6 (448-538)||(10579750-10579840)
chr6 (440-629)||(14820597-14820786)
chr6 (438-538)||(6603206-6603306)
chr6 (266-329)||(9411556-9411619)
chr6 (227-328)||(6432363-6432464)
chr6 (467-540)||(491486-491562)
chr6 (432-484)||(9410751-9410803)
[»] chr7 (6 HSPs)
chr7 (355-540)||(10614586-10614773)
chr7 (356-540)||(15092071-15092257)
chr7 (227-309)||(15091947-15092029)
chr7 (567-615)||(10170214-10170262)
chr7 (567-615)||(10177739-10177787)
chr7 (301-329)||(10614794-10614822)
[»] chr2 (3 HSPs)
chr2 (345-537)||(1037573-1037767)
chr2 (440-540)||(45245091-45245191)
chr2 (196-518)||(32785537-32785856)
[»] chr1 (10 HSPs)
chr1 (432-619)||(19468497-19468684)
chr1 (438-532)||(52082582-52082676)
chr1 (467-628)||(7554393-7554554)
chr1 (354-534)||(52092776-52092955)
chr1 (191-325)||(9581276-9581410)
chr1 (227-329)||(19468295-19468397)
chr1 (467-589)||(29718956-29719078)
chr1 (443-540)||(9586632-9586729)
chr1 (216-325)||(9586844-9586953)
chr1 (467-614)||(29658929-29659076)
[»] scaffold0295 (1 HSPs)
scaffold0295 (345-534)||(533-724)
[»] scaffold0041 (1 HSPs)
scaffold0041 (461-541)||(39176-39256)
[»] scaffold0014 (1 HSPs)
scaffold0014 (448-545)||(88827-88924)
[»] scaffold0807 (1 HSPs)
scaffold0807 (438-527)||(1468-1560)


Alignment Details
Target: chr4 (Bit Score: 618; Significance: 0; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 618; E-Value: 0
Query Start/End: Original strand, 10 - 646
Target Start/End: Original strand, 1548002 - 1548636
Alignment:
Q  10 tcggtgtcctgaagtaaccaacgttggtattgcttctgctctcggtgaggcactaacattaaggtctttatcctttaccaattattttgaaccccaagaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1548002 tcggtgtcctgaagtaaccaacgttggtattgcttctgctctcggtgaggcactaacattaaggtctttatcctttaccaattattttgaaccccaagaa 1548101  T
Q  110 tgttcgatgttgtttgacctcgttaagaacagtccttcacttagtgagatcagaatggaatacaactttgaaaatagttttgagacttctaattctttca 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1548102 tgttcgatgttgtttgacctcgttaagaacagtccttcacttagtgagatcagaatggaatacaactttgaaaatagttttgagacttctaattctttca 1548201  T
Q  210 tggaccttgttgtaagacctcaattaaagtcactctgtttgactcacaattcacgcttaagagatgaaaccatcaaaatattttcttcgattttccccaa 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1548202 tggaccttgttgtaagacctcaattaaagtcactctgtttgactcacaattcacgcttaagagatgaaaccatcaaaatattttcttcgattttccccaa 1548301  T
Q  310 tttgcaactgcttgatttgattaggtacgcagtggcatatcagacgaaggtatttgtgaagttttaagatgttgtaagattagacagttgaacttagctc 409  Q
    |||||||||||||||||||||||  |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1548302 tttgcaactgcttgatttgattaatt--gcagtggcatatcagacgaaggtatttgtgaagttttaagatgttgtaagattagacagttgaacttagctc 1548399  T
Q  410 gtagtttaaaagtgaagctactttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatg 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1548400 gtagtttaaaagtgaagctactttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatg 1548499  T
Q  510 tgatctcaaagagttgttgtgggcttttgcacttgttacaaaaacgttgtaaaaatatcacagagaagggagtgaaacatatagaagaaaactgctcgca 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1548500 tgatctcaaagagttgttgtgggcttttgcacttgttacaaaaacgttgtaaaaatatcacagagaagggagtgaaacatatagaagaaaactgctcgca 1548599  T
Q  610 actgagagaaattaatttggaaggttgttttcaattg 646  Q
    |||||||||||||||||||||||||||||||||||||    
T  1548600 actgagagaaattaatttggaaggttgttttcaattg 1548636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 342 - 637
Target Start/End: Original strand, 1552673 - 1552973
Alignment:
Q  342 tggcatatcagacgaaggtatttgtgaagttttaagatgttgtaagattagacagttgaacttagctcgtagtttaa---aagtgaagctactttggact 438  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||| |   ||| |||||||||| |||||    
T  1552673 tggcatatcagacgaaggtatttgtgaagttttaagatgttgtaagattagacatttgaacttagcccatagttttatagaagggaagctactt-ggact 1552771  T
Q  439 gaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttg 538  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||| |||| |||||||||||||||||||||| ||||||| |||| |||||||||||    
T  1552772 gaactttgaaattcccaaactggaagtgttgaatttgtcacatacaaatattaatgatgaaacactcaatgtgatatcaaagaattgtcgtgggcttttg 1552871  T
Q  539 cacttgttacaaaaacgttgta---aaaatatcacagagaagggagtgaaacatatagaagaaaactgctcgcaactgagagaaattaatttggaaggtt 635  Q
    ||  |||||| | |||  ||||   |  || |||| |||||||||||||| ||| | | |||||| |||| |||||| ||||| || |||||| ||||||    
T  1552872 cagctgttactagaacaatgtaattattatgtcaccgagaagggagtgaagcatgtcggagaaaattgcttgcaactaagagagatcaatttgaaaggtt 1552971  T
Q  636 gt 637  Q
    ||    
T  1552972 gt 1552973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 191 - 548
Target Start/End: Complemental strand, 547255 - 546898
Alignment:
Q  191 gagacttctaattctttcatggaccttgttgtaagacctcaattaaagtcactctgtttgactcacaattcacgcttaagagatgaaaccatcaaaatat 290  Q
    |||| |||||||||||||| |||  |||||||||| |||||||| ||||| |||  |||| || | |||||| || |||||||||||| ||||||||| |    
T  547255 gagaattctaattctttcaaggattttgttgtaagccctcaattgaagtctctccatttggctaaaaattcatgcataagagatgaaagcatcaaaatgt 547156  T
Q  291 tttcttcgattttccccaatttgcaactgcttgatttgattaggtacgcagtggcatatcagacgaaggtatttgtgaagttttaag---atgttgtaag 387  Q
    || |||| || |||||||||||||||||||||||||| | |   |  |  ||  |||||| || ||  |||||||||| ||||||||   ||||||||||    
T  547155 ttccttccatgttccccaatttgcaactgcttgatttaagttatt--gtcgtaacatatctgaagacagtatttgtgatgttttaaggagatgttgtaag 547058  T
Q  388 attagacagttgaacttagctcgtagtttaaaagtgaagctactttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagt 487  Q
    || || || ||||||||| |   | |||||  |||||| ||| |||||| ||||||||||| |||| ||| |||||||| |||||||||||| ||||| |    
T  547057 ataaggcatttgaacttatccaattgtttagtagtgaaccta-tttggaatgaactttgaagttcctaaattggaggtggtgaacttgtcacgtacaatt 546959  T
Q  488 attgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgcacttgttac 548  Q
     |  |||||||||||||| |||||||||||||||||||||||||||||||| | |||||||    
T  546958 gtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttggaattgttac 546898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 438 - 548
Target Start/End: Original strand, 8187095 - 8187205
Alignment:
Q  438 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggctttt 537  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||| |||||||  |||  || |||||||||||||||||||||||    
T  8187095 tgaactttgaaatttccaaactggaggtgttgaacttgtcacatacaagagttgatgataaaacactttatgcaatttcaaagagttgttgtgggctttt 8187194  T
Q  538 gcacttgttac 548  Q
    ||| |||||||    
T  8187195 gcagttgttac 8187205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 433 - 540
Target Start/End: Original strand, 1524485 - 1524592
Alignment:
Q  433 tggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtggg 532  Q
    |||| ||||||||||| |||||||  ||||||||||||| ||||||| ||||||| ||||||||||||||||| || |||||||| |||||||| |||||    
T  1524485 tggaatgaactttgaagttcccaatttggaggtgttgaatttgtcacgtacaagtgttgatgatgaaacactctatatgatctcacagagttgtcgtggg 1524584  T
Q  533 cttttgca 540  Q
    ||||||||    
T  1524585 cttttgca 1524592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 438 - 540
Target Start/End: Complemental strand, 553574 - 553472
Alignment:
Q  438 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggctttt 537  Q
    |||||||| || ||| |||||||||||||||||||||||||  ||||||  ||||||||||| |||| |||||||| ||||||||||||| |||||||||    
T  553574 tgaactttaaagttctcaaactggaggtgttgaacttgtcatttacaagagttgatgatgaagcacttaatgtgatttcaaagagttgttctgggctttt 553475  T
Q  538 gca 540  Q
    |||    
T  553474 gca 553472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 376 - 585
Target Start/End: Original strand, 3438509 - 3438716
Alignment:
Q  376 agatgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctactttggactgaactttgaaattcccaaactggaggtgttgaacttg 475  Q
    |||||||||||||||||||| |||||||||||| || |||||  ||||||  |  | || | ||||||||||  || | ||| ||||||| |||| ||||    
T  3438509 agatgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttg-tgtgcaatgaactttgatgtttcaaaattggaggtattgagcttg 3438607  T
Q  476 tcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgcacttgttacaaaaacgttgtaaaaatatcacagaga 575  Q
    |||||||||||  |||||||| ||| |||| |||| |||||||||||||||||||||||||||||  ||||||   ||  |||||||  | |||||| ||    
T  3438608 tcacatacaagagttgatgat-aaatactccatgtaatctcaaagagttgttgtgggcttttgcaactgttactggaattttgtaaaggtgtcacagtga 3438706  T
Q  576 agggagtgaa 585  Q
    ||||||||||    
T  3438707 agggagtgaa 3438716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 345 - 537
Target Start/End: Original strand, 55908637 - 55908831
Alignment:
Q  345 catatcagacgaaggtatttgtgaagttttaag---atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctactttggactgaa 441  Q
    |||||| || |||||||||||||||||| ||||   |||||||||| ||||||| ||||| |||||     ||| || |||||| |||||| | | | ||    
T  55908637 catatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggttagacatttgaatttagcctactgttcaagagtgaaactacttagaa-taaa 55908735  T
Q  442 ctttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggctttt 537  Q
    |||| || ||||  || | |||||||| ||||||||||||||| || ||||||||||||||||| || |||||||||||| |||||||||||||||    
T  55908736 ctttaaagttcctgaattagaggtgtttaacttgtcacatacatgtgttgatgatgaaacactctatatgatctcaaagaattgttgtgggctttt 55908831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 438 - 538
Target Start/End: Original strand, 8184034 - 8184134
Alignment:
Q  438 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggctttt 537  Q
    ||||||||||| |||| ||||| ||||||||||||||||||||||||||  ||||||||  | ||||| |||  ||||||||||||||||||||||||||    
T  8184034 tgaactttgaagttccgaaactagaggtgttgaacttgtcacatacaagagttgatgatatagcactctatgcaatctcaaagagttgttgtgggctttt 8184133  T
Q  538 g 538  Q
    |    
T  8184134 g 8184134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 438 - 540
Target Start/End: Original strand, 1513411 - 1513513
Alignment:
Q  438 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggctttt 537  Q
    ||||||||||| |||||||||| || |||||||||||||||  ||||| | ||||||||||||||||| | || ||||||||| ||||| ||||||||||    
T  1513411 tgaactttgaagttcccaaactagaagtgttgaacttgtcatttacaaatgttgatgatgaaacactctacgtaatctcaaagtgttgtcgtgggctttt 1513510  T
Q  538 gca 540  Q
    |||    
T  1513511 gca 1513513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 359 - 540
Target Start/End: Complemental strand, 570524 - 570344
Alignment:
Q  359 gtatttgtgaagttttaagatgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctactttggactgaactttgaaattcccaaac 458  Q
    |||||||| |||||||||||||||||||  |||| || |||||||||||||   | | ||||||||| || | | ||| ||||||||||| ||| |||||    
T  570524 gtatttgtcaagttttaagatgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcgt-ggattgaactttgaagttctcaaac 570426  T
Q  459 tggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgca 540  Q
    | |||||||||||||||||| ||||| |  ||||| | |||  |||| || |||| |||||||||||| | |||||||||||    
T  570425 tcgaggtgttgaacttgtcatatacaggagttgataacgaagaactctatctgatttcaaagagttgtcgcgggcttttgca 570344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 438 - 540
Target Start/End: Original strand, 12121461 - 12121563
Alignment:
Q  438 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggctttt 537  Q
    ||||||||||| |||||||||| || ||||||||||||||| |||||| | |||||||||||||||||   || ||||||||| ||||  ||||||||||    
T  12121461 tgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggctttt 12121560  T
Q  538 gca 540  Q
    |||    
T  12121561 gca 12121563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 438 - 519
Target Start/End: Original strand, 1519146 - 1519227
Alignment:
Q  438 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaa 519  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||||  |||||||  || ||||| |||||||||||||    
T  1519146 tgaactttgaagttcccaaactagaggtgttgaacttgtcacatacaagggttgatgaataagcactctatgtgatctcaaa 1519227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 439 - 538
Target Start/End: Complemental strand, 558592 - 558493
Alignment:
Q  439 gaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttg 538  Q
    |||||||||| || |||| || | ||||||||||||||||   |||  ||||||||||||| ||||| |||||||||||||||||||| |||||||||||    
T  558592 gaactttgaagttgccaacctaggggtgttgaacttgtcattaacatatattgatgatgaagcactccatgtgatctcaaagagttgtcgtgggcttttg 558493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 443 - 537
Target Start/End: Complemental strand, 659799 - 659707
Alignment:
Q  443 tttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggctttt 537  Q
    |||||| |||||||||| ||||||||||||||||||||||||||| || || ||||||||||  |||||||||||| || ||||| |||| ||||    
T  659799 tttgaagttcccaaactagaggtgttgaacttgtcacatacaagtgttaataatgaaacact--atgtgatctcaaggaattgttttggggtttt 659707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 438 - 548
Target Start/End: Complemental strand, 7307955 - 7307845
Alignment:
Q  438 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggctttt 537  Q
    |||||||| || |||||||| ||||||| |||||||||||| |||||    ||||||||||| ||||   | |||||||||||||||||||| |||||||    
T  7307955 tgaactttaaagttcccaaattggaggtattgaacttgtcatatacagaagttgatgatgaagcactacgtatgatctcaaagagttgttgtaggctttt 7307856  T
Q  538 gcacttgttac 548  Q
    |||| ||||||    
T  7307855 gcacctgttac 7307845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 452 - 540
Target Start/End: Original strand, 1508021 - 1508109
Alignment:
Q  452 cccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgca 540  Q
    |||||||| || |||||||||||||||||||| | | ||||||||||||||||   ||| ||||||||| ||||| |||||||||||||    
T  1508021 cccaaactagaagtgttgaacttgtcacataccaatgttgatgatgaaacactgtgtgtaatctcaaagtgttgtcgtgggcttttgca 1508109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 433 - 540
Target Start/End: Original strand, 1537766 - 1537873
Alignment:
Q  433 tggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtggg 532  Q
    |||| ||||||||||| |||||||||| || ||||||||||||||| |||||| | || ||||  |||||||   ||| ||||||||| ||||| |||||    
T  1537766 tggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcgtggg 1537865  T
Q  533 cttttgca 540  Q
    ||||||||    
T  1537866 cttttgca 1537873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 305 - 505
Target Start/End: Complemental strand, 1600647 - 1600447
Alignment:
Q  305 cccaatttgcaactgcttgatttgattaggtacgcagtggcatatcagacgaaggtatttgtgaagttttaag---atgttgtaagattagacagttgaa 401  Q
    |||||||||||||||||||||||||  || |  ||| |  |||||| || |||||||||||| ||||||||||   || || ||| |||||||| |||||    
T  1600647 cccaatttgcaactgcttgatttgagcagtt--gcattaacatatctgaagaaggtatttgtcaagttttaaggagattttctaaaattagacatttgaa 1600550  T
Q  402 cttagctcgtagtttaaaagtgaagctactttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaac 501  Q
    |||||| |   ||| || | ||||||| |   ||| ||||||||||| |||  |||||||||||||||||||||||| |||||||  |||| |||||| |    
T  1600549 cttagcccagtgttcaataatgaagctgcga-ggaatgaactttgaagttcttaaactggaggtgttgaacttgtcatatacaagggttgacgatgaagc 1600451  T
Q  502 actc 505  Q
    ||||    
T  1600450 actc 1600447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 356 - 604
Target Start/End: Original strand, 53761692 - 53761939
Alignment:
Q  356 aaggtatttgtgaagttttaag---atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctactttggactgaactttgaaattc 452  Q
    ||||||||||| ||||||||||   ||||||||| ||||| || |||||||||||     ||| || |||||||||| || ||| ||||||||| | |||    
T  53761692 aaggtatttgtcaagttttaaggagatgttgtaacattaggcatttgaacttagccgagtgttcaagagtgaagctaatt-ggaatgaactttgtagttc 53761790  T
Q  453 ccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgcacttgttacaaaa 552  Q
    |||| || |||| |||||||||||||  ||| |   || | ||| ||||||||  ||||||||| |||| |||| ||||||||||||| |  ||||  ||    
T  53761791 ccaagctagaggcgttgaacttgtcatttacgaaagttaacgataaaacactc--tgtgatctcgaagaattgtcgtgggcttttgcaata-ttactgaa 53761887  T
Q  553 acgttgtaaaaatatcacagagaagggagtgaaacatatagaagaaaactgc 604  Q
    || |||| | ||| |||| || ||||||||||||||| | ||||||||||||    
T  53761888 acattgtgataatgtcacggacaagggagtgaaacatgtggaagaaaactgc 53761939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 432 - 536
Target Start/End: Complemental strand, 532290 - 532186
Alignment:
Q  432 ttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgg 531  Q
    ||||| ||||||||||| | ||||| || |||||||||||||||||| ||||||  |||||||||||||  ||  |||||| |||||||| |||| |||     
T  532290 ttggaatgaactttgaagtccccaagctagaggtgttgaacttgtcatatacaaacattgatgatgaaaagctttatgtgacctcaaagaattgtcgtga 532191  T
Q  532 gcttt 536  Q
    |||||    
T  532190 gcttt 532186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 438 - 540
Target Start/End: Original strand, 7225887 - 7225989
Alignment:
Q  438 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggctttt 537  Q
    ||||||||||| ||| | || ||||||| ||||||||||||||||||||  |||||||  ||  |||   |||||| ||||||||||||||||| |||||    
T  7225887 tgaactttgaagttctcgaattggaggtcttgaacttgtcacatacaagagttgatgacaaaggacttcgtgtgatatcaaagagttgttgtggactttt 7225986  T
Q  538 gca 540  Q
    |||    
T  7225987 gca 7225989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 461 - 507
Target Start/End: Original strand, 12116602 - 12116648
Alignment:
Q  461 gaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaa 507  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||    
T  12116602 gaggtgttgaacttgtcacatacaagtgttgatgatgaatcactcaa 12116648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 489 - 638
Target Start/End: Complemental strand, 566233 - 566084
Alignment:
Q  489 ttgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgcacttgttacaaaaacgttgtaaaaatatcacagagaagggagtgaaaca 588  Q
    ||||||||||||||||| ||||||||||||||   ||| |||||||||||||  ||| ||   ||  |  | ||||| | ||||||||||||||||||||    
T  566233 ttgatgatgaaacactctatgtgatctcaaagtactgtcgtgggcttttgcagctgtcactgcaatataatcaaaatgttacagagaagggagtgaaaca 566134  T
Q  589 tatagaagaaaactgctcgcaactgagagaaattaatttggaaggttgtt 638  Q
      | |  ||||||||| | |||||||||||||| || ||||| |||||||    
T  566133 cctggtggaaaactgcacacaactgagagaaatcaagttggagggttgtt 566084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 459 - 540
Target Start/End: Complemental strand, 640989 - 640908
Alignment:
Q  459 tggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgca 540  Q
    |||||||||||||||||||| ||||||   ||||||||||||||||| | |||| |||||||| |||  |||| ||||||||    
T  640989 tggaggtgttgaacttgtcagatacaaacgttgatgatgaaacactctacgtgacctcaaagaattgccgtggtcttttgca 640908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 456 - 547
Target Start/End: Original strand, 55505130 - 55505221
Alignment:
Q  456 aactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgcacttgtta 547  Q
    |||| |||||||||||||||||| ||||||   |||| |||| ||||||  |||||| |||||||| |||| |||| |||||||| ||||||    
T  55505130 aactagaggtgttgaacttgtcatatacaaaggttgacgatggaacactttatgtgacctcaaagaattgtcgtggacttttgcatttgtta 55505221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 378 - 478
Target Start/End: Complemental strand, 644984 - 644885
Alignment:
Q  378 atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctactttggactgaactttgaaattcccaaactggaggtgttgaacttgtc 477  Q
    ||||||||| |||||||| ||||| ||| ||||  ||| || | |||||||||||   | ||||||||||| |||||||||||||||||||  |||||||    
T  644984 atgttgtaacattagacatttgaatttaactcgctgttcaagactgaagctacttac-attgaactttgaagttcccaaactggaggtgttagacttgtc 644886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 355 - 478
Target Start/End: Original strand, 21834297 - 21834422
Alignment:
Q  355 gaaggtatttgtgaagttttaag---atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctactttggactgaactttgaaatt 451  Q
    ||||||||||| |||||||||||   ||||||||||||||  || ||||||||| |  || |||  ||||||||||||| | | | | ||||||| | ||    
T  21834297 gaaggtatttgcgaagttttaaggaaatgttgtaagattaagcatttgaacttatcaggttgttataaagtgaagctacatagta-tcaactttgtagtt 21834395  T
Q  452 cccaaactggaggtgttgaacttgtca 478  Q
    ||||| |||||||||||| ||||||||    
T  21834396 cccaagctggaggtgttggacttgtca 21834422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 438 - 485
Target Start/End: Original strand, 1489365 - 1489412
Alignment:
Q  438 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaa 485  Q
    ||||||||||| |||||||||| || ||||||||||||||| ||||||    
T  1489365 tgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaa 1489412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 438 - 504
Target Start/End: Complemental strand, 1545868 - 1545802
Alignment:
Q  438 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacact 504  Q
    |||||||| || |||| ||||||||||||||||||||||    ||||||  ||||||||||||||||    
T  1545868 tgaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttgatgatgaaacact 1545802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 227 - 329
Target Start/End: Original strand, 21834174 - 21834276
Alignment:
Q  227 cctcaattaaagtcactctgtttgactcacaattcacgcttaagagatgaaaccatcaaaatattttcttcgattttccccaatttgcaactgcttgatt 326  Q
    |||||||||||||| |||| ||||   | ||||||| | ||||  |||||||  |||| ||| ||| |||| |||||||||||||| || ||||||||||    
T  21834174 cctcaattaaagtctctctttttgggccgcaattcatggttaaatgatgaaagaatcataatgtttgcttcaattttccccaatttacagctgcttgatt 21834273  T
Q  327 tga 329  Q
    |||    
T  21834274 tga 21834276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 567 - 629
Target Start/End: Original strand, 21834439 - 21834501
Alignment:
Q  567 tcacagagaagggagtgaaacatatagaagaaaactgctcgcaactgagagaaattaatttgg 629  Q
    |||||||||||||| |||||||||| | |||||  ||  | ||||||||||||||||||||||    
T  21834439 tcacagagaagggaatgaaacatatggtagaaagatgtacacaactgagagaaattaatttgg 21834501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Complemental strand, 370946 - 370913
Alignment:
Q  507 atgtgatctcaaagagttgttgtgggcttttgca 540  Q
    ||||||||||||||||||||||| ||||||||||    
T  370946 atgtgatctcaaagagttgttgtcggcttttgca 370913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 2e-57; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 227 - 540
Target Start/End: Original strand, 18315066 - 18315379
Alignment:
Q  227 cctcaattaaagtcactctgtttgactcacaattcacgcttaagagatgaaaccatcaaaatattttcttcgattttccccaatttgcaactgcttgatt 326  Q
    |||||||||||||| ||| |||| |||  ||||||| | |||||||| |||| |||||||||||||||||| |||||||||||||||||  |||||||||    
T  18315066 cctcaattaaagtctctccgttttacttgcaattcatggttaagagaggaaagcatcaaaatattttcttccattttccccaatttgcagttgcttgatt 18315165  T
Q  327 tgattaggtac-gcagtggcatatcagacgaaggtatttgtgaagttttaagatgttgta---agattagacagttgaacttagctcgtagtttaaaagt 422  Q
    |||   | ||| ||  |  |||| | || |||||||||||| |||||||| || |||||    ||||||||||||||||||||||||||  || || | |    
T  18315166 tga---gctactgcgataacatacctgaagaaggtatttgtcaagttttacgaagttgttctgagattagacagttgaacttagctcgtgattcaagaat 18315262  T
Q  423 gaagctactttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagag 522  Q
    |||||||| | ||| |||||||| || ||||||||||||||||||||||||||||||||||||   ||||||||||| ||||| ||||||||||||||||    
T  18315263 gaagctacgt-ggaatgaactttaaagttcccaaactggaggtgttgaacttgtcacatacaaaagttgatgatgaagcactctatgtgatctcaaagag 18315361  T
Q  523 ttgttgtgggcttttgca 540  Q
    |||| || ||||||||||    
T  18315362 ttgtcgtaggcttttgca 18315379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 438 - 637
Target Start/End: Complemental strand, 27922603 - 27922404
Alignment:
Q  438 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggctttt 537  Q
    ||||||||||| |||||||| |||||||||||||||||||| |||||| | ||||||||||| ||||  || ||||||||||||||||||||||||||||    
T  27922603 tgaactttgaagttcccaaattggaggtgttgaacttgtcatatacaaatgttgatgatgaagcactttatatgatctcaaagagttgttgtgggctttt 27922504  T
Q  538 gcacttgttacaaaaacgttgtaaaaatatcacagagaagggagtgaaacatatagaagaaaactgctcgcaactgagagaaattaatttggaaggttgt 637  Q
    | | |||| ||   ||  ||||||  || ||||| ||||||||||||| ||| | | |||||||||| | ||||||||| | |||| |||||| ||||||    
T  27922503 gaaattgtcacttgaaaattgtaatgatttcacaaagaagggagtgaaccatgtggtagaaaactgcactcaactgagaaagattagtttggatggttgt 27922404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 280 - 540
Target Start/End: Complemental strand, 32151551 - 32151294
Alignment:
Q  280 catcaaaatattttcttcgattttccccaatttgcaactgcttgatttgattaggtacgcagtggcatatcagacgaaggtatttgtgaagttttaagat 379  Q
    ||||||||| ||| |||| |||||||| ||||||||||||||||||||||   | |  ||  |  |||||| || ||||| |||||| ||||||||||||    
T  32151551 catcaaaatgtttgcttccattttccctaatttgcaactgcttgatttgaggtgtt--gccataacatatctgaagaaggaatttgtcaagttttaagat 32151454  T
Q  380 gttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctactttggactgaactttgaaattcccaaactggaggtgttgaacttgtcac 479  Q
    | | | ||||||| || ||||| ||  |  |  ||||| | |||||||| | | ||| ||||||| ||| || |||| ||||||||||| |||||||||     
T  32151453 gctctgagattaggcatttgaatttcaccggctgtttacatgtgaagctgcgt-ggaatgaacttcgaagtttccaatctggaggtgttaaacttgtcat 32151355  T
Q  480 atacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgca 540  Q
     ||||||  ||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  32151354 gtacaaggtttgatgatgaaacactctatgtgatctcaaagagttgtagtgggcttttgca 32151294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 346 - 526
Target Start/End: Original strand, 17636307 - 17636493
Alignment:
Q  346 atatcagacgaaggtatttgtgaagttttaag---atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctactttg---gactg 439  Q
    ||||||||  ||||||||||| ||||||||||   ||||| ||| ||||| || ||||||||||  ||  ||| || |||||| |||| | |   || ||    
T  17636307 atatcagagaaaggtatttgtcaagttttaaggggatgttctaatattaggcatttgaacttaggccgatgttcaagagtgaaactacatcgatcgaatg 17636406  T
Q  440 aactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgt 526  Q
    ||||||||| |||||||| |||||||||||||||||||||| ||| |  |||| |||||| || |  ||||||||||||||||||||    
T  17636407 aactttgaagttcccaaattggaggtgttgaacttgtcacaaacaggagttgacgatgaagcattgtatgtgatctcaaagagttgt 17636493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 196 - 327
Target Start/End: Original strand, 17627821 - 17627952
Alignment:
Q  196 ttctaattctttcatggaccttgttgtaagacctcaattaaagtcactctgtttgactcacaattcacgcttaagagatgaaaccatcaaaatattttct 295  Q
    ||||||||||||  ||||  | |||||||| ||||||||||| || |||| |||| ||  |||||||    || | ||||||| ||||||||| ||| ||    
T  17627821 ttctaattctttggtggatttcgttgtaagccctcaattaaaatctctctatttggctttcaattcattgctatgcgatgaaaacatcaaaatgtttgct 17627920  T
Q  296 tcgattttccccaatttgcaactgcttgattt 327  Q
    || |||||||||||||||||||||||||||||    
T  17627921 tccattttccccaatttgcaactgcttgattt 17627952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 378 - 540
Target Start/End: Original strand, 28246240 - 28246399
Alignment:
Q  378 atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctactttggactgaactttgaaattcccaaactggaggtgttgaacttgtc 477  Q
    ||||||||| |||||||| ||||| ||| ||||| ||| || | ||||||||| |   | ||||||||||| |||||||||||||||||||| |||||||    
T  28246240 atgttgtaacattagacatttgaatttaactcgttgttcaagactgaagctacatac-attgaactttgaagttcccaaactggaggtgttggacttgtc 28246338  T
Q  478 acatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgca 540  Q
    |  ||||||  ||||  || || ||||| ||  |||||||||||||||| | |||||||||||    
T  28246339 atttacaagagttga--ataaatcactctattggatctcaaagagttgtagcgggcttttgca 28246399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 450 - 540
Target Start/End: Original strand, 34936179 - 34936269
Alignment:
Q  450 ttcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgca 540  Q
    |||| ||||| ||||||||| |||||||| |||||||  |||||||| |||||||| |||  ||| ||||||||||| |||||||||||||    
T  34936179 ttccaaaactagaggtgttggacttgtcatatacaagagttgatgataaaacactctatgccatcgcaaagagttgtcgtgggcttttgca 34936269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 438 - 534
Target Start/End: Original strand, 17628018 - 17628114
Alignment:
Q  438 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggct 534  Q
    |||||||| || || | ||| ||||||||||||||||||||||||| ||  |||||||| || |||||  |||||||||||||| ||||| ||||||    
T  17628018 tgaactttaaactttctaaattggaggtgttgaacttgtcacatactagagttgatgataaagcactccgtgtgatctcaaagaattgttttgggct 17628114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 433 - 484
Target Start/End: Complemental strand, 21235658 - 21235607
Alignment:
Q  433 tggactgaactttgaaattcccaaactggaggtgttgaacttgtcacataca 484  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||| |||||    
T  21235658 tggagtgaactttgaagttcccaaactggaggtgttgaacttgtcatataca 21235607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 498 - 538
Target Start/End: Complemental strand, 44736570 - 44736530
Alignment:
Q  498 aaacactcaatgtgatctcaaagagttgttgtgggcttttg 538  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  44736570 aaacactcattgtgatctcaaagagttgttgtgggcttttg 44736530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 4e-43; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 191 - 640
Target Start/End: Original strand, 51113541 - 51113987
Alignment:
Q  191 gagacttctaattctttcatggaccttgttgtaagacctcaattaaagtcactctgtttgactcacaattcacgcttaagagatgaaaccatcaaaatat 290  Q
    |||| |||||||||||| ||||   ||||||||||||| ||||||||||| |||   |||  ||||||| || | ||||||||||| | ||||| |||      
T  51113541 gagaattctaattctttgatgggttttgttgtaagaccgcaattaaagtctctccagttggatcacaatccatggttaagagatgagagcatcataatga 51113640  T
Q  291 tttcttcgattttccccaatttgcaactgcttgatttgattaggtacgcagtggcatatcagacgaaggtatttgtgaagttttaa---gatgttgtaag 387  Q
    || |||| |||||||||||| |||| || |||||||| | |   |  ||  ||  |||||   ||||||||||||| |||||||||   ||||||||||     
T  51113641 ttgcttccattttccccaatctgcagcttcttgatttaactcatt--gctatgagatatc---cgaaggtatttgtcaagttttaaagagatgttgtaaa 51113735  T
Q  388 attagacagttgaacttagctcgtagtttaaaagtgaagctactttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagt 487  Q
    ||||| || ||||| ||||||    ||| |||| ||||||||||| ||| |||||||||||  ||||||||||||||||||  |||||||| ||||||      
T  51113736 attaggcatttgaaattagcttactgttcaaaactgaagctactt-ggaatgaactttgaagctcccaaactggaggtgttagacttgtcaaatacaatg 51113834  T
Q  488 attgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgcacttgttacaaaaacgttgtaaaaatatcacagagaagggagtgaaac 587  Q
     ||||||||||||||||| |||||||||| |||||||||||||||||||||||  ||||||  |||  |||| |  || ||||||||||||||||||| |    
T  51113835 gttgatgatgaaacactctatgtgatctcgaagagttgttgtgggcttttgcaactgttactgaaaaattgttaccatgtcacagagaagggagtgaagc 51113934  T
Q  588 atatagaagaaaactgctcgcaactgagagaaattaatttggaaggttgtttt 640  Q
    || | | |||||| ||| |  |||| ||||| ||||||||  | |||||||||    
T  51113935 atgtggtagaaaaatgcacaaaactaagagagattaatttaaagggttgtttt 51113987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 356 - 589
Target Start/End: Original strand, 13470652 - 13470887
Alignment:
Q  356 aaggtatttgtgaagttttaag---atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctactttggactgaactttgaaattc 452  Q
    ||||||||||| ||||||||||   ||||||||||||||| || |||||||||||   | ||  |||||||||||||||| ||| |||||||||   |||    
T  13470652 aaggtatttgtcaagttttaaggatatgttgtaagattaggcatttgaacttagcctattgtaaaaaagtgaagctactt-ggaatgaactttgttgttc 13470750  T
Q  453 ccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgcacttgttacaaaa 552  Q
    |||| ||||||||||||||||||||| ||||||   || ||||| |||||||| || |||||||||||| ||||||||||||||||||  | ||||   |    
T  13470751 ccaatctggaggtgttgaacttgtcaaatacaaaggttaatgataaaacactctatatgatctcaaagaattgttgtgggcttttgcaactattacttga 13470850  T
Q  553 acgttgtaaaaatatcacagagaagggagtgaaacat 589  Q
    || |||| | ||| |||||||  ||||||||||||||    
T  13470851 actttgtcataatgtcacagaagagggagtgaaacat 13470887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 376 - 545
Target Start/End: Original strand, 51120836 - 51121004
Alignment:
Q  376 agatgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctactttggactgaactttgaaattcccaaactggaggtgttgaacttg 475  Q
    ||||||||||| |||||||| ||||||||  |  || ||| || |||||| || | | ||| ||||||||||| ||| |||| |||||||||||||||||    
T  51120836 agatgttgtaacattagacacttgaacttcaccggttgttcaagagtgaaactgcat-ggaatgaactttgaagttctcaaattggaggtgttgaacttg 51120934  T
Q  476 tcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgcacttgt 545  Q
    || ||||||||  |||||||||||| |||  |||| ||||||||||||||| ||||||||||||| ||||    
T  51120935 tcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaattgt 51121004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 420 - 619
Target Start/End: Original strand, 51764427 - 51764625
Alignment:
Q  420 agtgaagctactttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaa 519  Q
    ||||||||||||| ||| ||||||||| | |||| || |||||||||||  ||||||||  |||||   |||||||| |||||||| ||| |||||||||    
T  51764427 agtgaagctactt-ggaatgaactttgcagttccgaagctggaggtgttagacttgtcatttacaaaagttgatgataaaacactctatgcgatctcaaa 51764525  T
Q  520 gagttgttgtgggcttttgcacttgttacaaaaacgttgtaaaaatatcacagagaagggagtgaaacatatagaagaaaactgctcgcaactgagagaa 619  Q
    || |||||| |||||||||||  | ||||   ||| |||| | ||| |||  |||||||||||||||||| | |  ||||||||| | ||| ||||||||    
T  51764526 gaattgttgcgggcttttgcaactattactggaacattgtgataatgtcaaggagaagggagtgaaacatgtggttgaaaactgcacacaattgagagaa 51764625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 200 - 329
Target Start/End: Original strand, 514494 - 514623
Alignment:
Q  200 aattctttcatggaccttgttgtaagacctcaattaaagtcactctgtttgactcacaattcacgcttaagagatgaaaccatcaaaatattttcttcga 299  Q
    ||||||||  ||||| ||||||| |  ||||||||||| || |||| |||| ||||||||||| ||||||||||||||| | | | ||| ||| |||| |    
T  514494 aattctttgttggactttgttgtgaaccctcaattaaaatctctctatttggctcacaattcatgcttaagagatgaaaaccttataatgtttgcttcaa 514593  T
Q  300 ttttccccaatttgcaactgcttgatttga 329  Q
    ||||||| |||||||| ||  |||||||||    
T  514594 ttttcccgaatttgcagctaattgatttga 514623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 453 - 521
Target Start/End: Original strand, 27005791 - 27005859
Alignment:
Q  453 ccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaaga 521  Q
    ||||||||||||| |||||||||||||||||||| |||||| ||  ||||||  |||| ||||||||||    
T  27005791 ccaaactggaggtcttgaacttgtcacatacaagaattgataatacaacactttatgtaatctcaaaga 27005859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 438 - 540
Target Start/End: Complemental strand, 1657346 - 1657244
Alignment:
Q  438 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggctttt 537  Q
    ||||||||||| |||||||||||||||||||| ||||||||  ||||||  ||||  ||  | ||||| ||  |||||||||||||||  | ||||||||    
T  1657346 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacaatatatcactctattggatctcaaagagttgcagcgggctttt 1657247  T
Q  538 gca 540  Q
    |||    
T  1657246 gca 1657244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 266 - 327
Target Start/End: Original strand, 51764275 - 51764336
Alignment:
Q  266 ttaagagatgaaaccatcaaaatattttcttcgattttccccaatttgcaactgcttgattt 327  Q
    ||||| ||||||| ||||| ||| ||| |||| ||||||||||||||||| |||||||||||    
T  51764275 ttaagtgatgaaagcatcataatgtttgcttccattttccccaatttgcagctgcttgattt 51764336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 497
Target Start/End: Original strand, 33714861 - 33714918
Alignment:
Q  440 aactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatg 497  Q
    ||||||||| || |||||||||||||| ||||||||||| |  |||| ||||||||||    
T  33714861 aactttgaagtttccaaactggaggtgctgaacttgtcaaactcaagaattgatgatg 33714918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 453 - 493
Target Start/End: Original strand, 36811046 - 36811086
Alignment:
Q  453 ccaaactggaggtgttgaacttgtcacatacaagtattgat 493  Q
    ||||||||||||||||||||||||| ||| |||| ||||||    
T  36811046 ccaaactggaggtgttgaacttgtcccattcaagaattgat 36811086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 5e-36; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 438 - 627
Target Start/End: Complemental strand, 32267570 - 32267381
Alignment:
Q  438 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggctttt 537  Q
    ||||||||||| |||||||| ||||||| |||||||||||||| ||||   ||||||||||| ||||  || ||||||||||||||||||||||||||||    
T  32267570 tgaactttgaagttcccaaattggaggtattgaacttgtcacaaacaatagttgatgatgaagcactttatatgatctcaaagagttgttgtgggctttt 32267471  T
Q  538 gcacttgttacaaaaacgttgtaaaaatatcacagagaagggagtgaaacatatagaagaaaactgctcgcaactgagagaaattaattt 627  Q
    | | |||| ||  |||  ||||||  |||||||| ||||||||||||| ||| ||| |||||||||| ||||||| ||| | ||||||||    
T  32267470 gaaattgtcacttaaaaattgtaatgatatcacaaagaagggagtgaagcatgtagtagaaaactgcacgcaacttagaaagattaattt 32267381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 441 - 640
Target Start/End: Original strand, 41901542 - 41901741
Alignment:
Q  441 actttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgca 540  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||   ||||||||||| ||||  || |||||||||||||||||||||| |||||| |    
T  41901542 actttgaagttcccaaactggaggtgttgaacttgtcatatacaaaagttgatgatgaagcactttatatgatctcaaagagttgttgtggacttttgaa 41901641  T
Q  541 cttgttacaaaaacgttgtaaaaatatcacagagaagggagtgaaacatatagaagaaaactgctcgcaactgagagaaattaatttggaaggttgtttt 640  Q
     |||| ||   ||  ||||||  || ||||| ||||||||||||| ||| | | |||||||||  ||||| ||||| | |||| |||| | |||||||||    
T  41901642 attgtcacttcaagattgtaatgatgtcacaaagaagggagtgaagcatgtggtagaaaactgtacgcaattgagaaagattagtttgaatggttgtttt 41901741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 441 - 540
Target Start/End: Complemental strand, 37937979 - 37937880
Alignment:
Q  441 actttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgca 540  Q
    |||||||| ||||||| || ||||||||| ||||| |||||||||| ||||||||| |||||||| |||| ||||||||||  ||| |||||||||||||    
T  37937979 actttgaagttcccaaccttgaggtgttggacttgacacatacaagaattgatgatcaaacactctatgtaatctcaaagatgtgtcgtgggcttttgca 37937880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 378 - 585
Target Start/End: Original strand, 41889499 - 41889705
Alignment:
Q  378 atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctactttggactgaactttgaaattcccaaactggaggtgttgaacttgtc 477  Q
    ||||||||| |||||| | ||||||||| |  |  ||| || ||||||||||||| | | |||||||| || |||||||| |||||||||||||||| ||    
T  41889499 atgttgtaacattagatatttgaacttatccggatgttcaatagtgaagctactt-gaaatgaactttaaagttcccaaattggaggtgttgaacttatc 41889597  T
Q  478 acatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgcacttgttacaaaaacgttgtaaaaatatcacagagaag 577  Q
    | ||||||   ||||||||||||||||  ||  |||||||||||||||||| ||||||| | | |||||||  |||  |||| |  || ||||| |||||    
T  41889598 atatacaaaagttgatgatgaaacactttataagatctcaaagagttgttgcgggctttcgaaattgttacttaaaaattgttatgatgtcacaaagaag 41889697  T
Q  578 ggagtgaa 585  Q
    ||||||||    
T  41889698 ggagtgaa 41889705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 376 - 540
Target Start/End: Original strand, 20478025 - 20478188
Alignment:
Q  376 agatgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctactttggactgaactttgaaattcccaaactggaggtgttgaacttg 475  Q
    |||||||||||| | || || |||||||||||| |  ||  || || |||||||||| ||| | ||| ||| ||||||| | ||||||||||||||||||    
T  20478025 agatgttgtaagttaaggcatttgaacttagctggatgtcgaagagcgaagctactt-ggaataaacgttgtaattccccagctggaggtgttgaacttg 20478123  T
Q  476 tcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgca 540  Q
    ||| |||||| | ||||||| |||||| |   ||||||||||| || ||||||||||||||||||    
T  20478124 tcatatacaaatgttgatgacgaaacattatctgtgatctcaaggaattgttgtgggcttttgca 20478188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 440 - 538
Target Start/End: Original strand, 38267562 - 38267660
Alignment:
Q  440 aactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttg 538  Q
    ||||||||| ||||||| || ||||||||| ||||| ||||||||||  |||||||||| |||||| |||| ||||||||||  ||  |||||||||||    
T  38267562 aactttgaagttcccaaccttgaggtgttggacttgacacatacaagagttgatgatgacacactctatgtaatctcaaagacgtgccgtgggcttttg 38267660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 3e-34; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 355 - 540
Target Start/End: Complemental strand, 6432341 - 6432154
Alignment:
Q  355 gaaggtatttgtgaagttttaag---atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctactttggactgaactttgaaatt 451  Q
    |||||||||||| ||||||||||   |||||||||  ||| ||| |||||||||||   | || ||||||||||||||| | ||| ||||||||||| ||    
T  6432341 gaaggtatttgtcaagttttaaggagatgttgtaaacttaaacatttgaacttagcctattgtataaaagtgaagctacat-ggaatgaactttgaagtt 6432243  T
Q  452 cccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgca 540  Q
    ||||| ||| ||||||||||||||||| |||||||  ||||||||||||||||  ||||||||| ||||| ||||||||||||| ||||    
T  6432242 cccaagctgaaggtgttgaacttgtcaaatacaagcgttgatgatgaaacactttatgtgatcttaaagaattgttgtgggcttctgca 6432154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 355 - 629
Target Start/End: Complemental strand, 6395044 - 6394768
Alignment:
Q  355 gaaggtatttgtgaagttttaag---atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctactttggactgaactttgaaatt 451  Q
    |||||||||||| |||||||||    |||||||||| ||| ||| ||||||||||||    ||| ||||||||| |||| | ||| ||||||||| | ||    
T  6395044 gaaggtatttgtcaagttttaaagaaatgttgtaagcttaaacatttgaacttagctttctgttcaaaagtgaaactacat-ggaatgaactttgcagtt 6394946  T
Q  452 cccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgcacttgttacaaa 551  Q
    ||| | ||||||||||||||||||||| |||||||  ||||||||||||| ||   |||||||||||||| |||||||||||||||||| ||   ||       
T  6394945 cccgagctggaggtgttgaacttgtcaaatacaagcgttgatgatgaaactctttctgtgatctcaaagaattgttgtgggcttttgcaattacaacttg 6394846  T
Q  552 aacgttgtaaaaatatcacagagaagggagtgaaacatatagaagaaaactgctcgcaactgagagaaattaatttgg 629  Q
    |   |||||||||| ||||||| ||||| ||| ||||| | | |||||||||| | ||| ||||||| ||||||||||    
T  6394845 ataattgtaaaaatgtcacagaaaagggtgtggaacatgtggtagaaaactgcacacaattgagagagattaatttgg 6394768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 355 - 538
Target Start/End: Complemental strand, 6403040 - 6402855
Alignment:
Q  355 gaaggtatttgtgaagttttaag---atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctactttggactgaactttgaaatt 451  Q
    |||||||||||| ||||||||||   ||||||||| ||||| || ||||||||| || |  ||| || ||||||||||||| ||| | ||||||| | ||    
T  6403040 gaaggtatttgtcaagttttaaggagatgttgtaacattaggcatttgaacttaactgggtgttcaagagtgaagctactt-ggaataaactttgcagtt 6402942  T
Q  452 cccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttg 538  Q
    ||| |||| || ||||||||||||||| |||| |   ||||||||||||||||| ||||||||||||||| |||| |||||||||||    
T  6402941 ccccaactagaagtgttgaacttgtcagatacgaaggttgatgatgaaacactctatgtgatctcaaagaattgtagtgggcttttg 6402855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 355 - 538
Target Start/End: Complemental strand, 7119337 - 7119152
Alignment:
Q  355 gaaggtatttgtgaagttttaag---atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctactttggactgaactttgaaatt 451  Q
    |||||||||||| ||||||||||   ||||| |||||||| ||| ||||||||||| |   ||| || ||||||||||||| ||| |||||||||   ||    
T  7119337 gaaggtatttgtcaagttttaaggagatgttctaagattaaacatttgaacttagcccactgttcaagagtgaagctactt-ggaatgaactttgttgtt 7119239  T
Q  452 cccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttg 538  Q
    | | | ||||||||||||||||||||| |||| |   ||||||||||||||||| |||||||||| |||| |||||| |||||||||    
T  7119238 caccagctggaggtgttgaacttgtcagatacgaaggttgatgatgaaacactccatgtgatctcgaagaattgttgcgggcttttg 7119152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 355 - 538
Target Start/End: Complemental strand, 7131815 - 7131630
Alignment:
Q  355 gaaggtatttgtgaagttttaag---atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctactttggactgaactttgaaatt 451  Q
    |||||||||||| ||||||||||   ||||| |||||||| ||| ||||||||||| |   ||| || ||||||||||||| ||| |||||||||   ||    
T  7131815 gaaggtatttgtcaagttttaaggagatgttctaagattaaacatttgaacttagcccactgttcaagagtgaagctactt-ggaatgaactttgttgtt 7131717  T
Q  452 cccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttg 538  Q
    | | | ||||||||||||||||||||| |||| |   ||||||||||||||||| |||||||||| |||| |||||| |||||||||    
T  7131716 cgccagctggaggtgttgaacttgtcagatacgaaggttgatgatgaaacactccatgtgatctcgaagaattgttgcgggcttttg 7131630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 417 - 540
Target Start/End: Complemental strand, 6410121 - 6409999
Alignment:
Q  417 aaaagtgaagctactttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctc 516  Q
    |||||||||||||| | ||| ||||||||||| ||||||| ||| |||||||||||| |||| |||||||  ||||||||||||| ||  ||||||||||    
T  6410121 aaaagtgaagctacat-ggaatgaactttgaagttcccaagctgaaggtgttgaactagtcaaatacaagcgttgatgatgaaactctttatgtgatctc 6410023  T
Q  517 aaagagttgttgtgggcttttgca 540  Q
    ||||| ||||||| ||||||||||    
T  6410022 aaagaattgttgtcggcttttgca 6409999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 459 - 589
Target Start/End: Original strand, 6585262 - 6585392
Alignment:
Q  459 tggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgcacttgttacaaaaacgttg 558  Q
    ||||||| |||||||||||| ||||||   ||||||||||||||||| ||||||||||||||||||||| || ||||||| |  | ||||  ||| ||||    
T  6585262 tggaggtattgaacttgtcagatacaaaggttgatgatgaaacactctatgtgatctcaaagagttgttctgcgcttttggaactattactgaaaggttg 6585361  T
Q  559 taaaaatatcacagagaagggagtgaaacat 589  Q
    | ||||| |||||||||||||| ||||||||    
T  6585362 tgaaaatgtcacagagaagggactgaaacat 6585392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 257 - 540
Target Start/End: Complemental strand, 6426784 - 6426504
Alignment:
Q  257 aattcacgcttaagagatgaaaccatcaaaatattttcttcgattttccccaatttgcaactgcttgatttgattaggtacgcagtggcatatcagacga 356  Q
    |||||| | ||||| ||||||| ||||| ||| | | |||| |||||||||||||| || || ||||||||||  ||||  || |||  ||||| ||       
T  6426784 aattcatggttaagtgatgaaatcatcataatgtatgcttccattttccccaatttacagctacttgatttga--aggtttgccgtgaaatatctga--- 6426690  T
Q  357 aggtatttgtgaagttttaag---atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctactttggactgaactttgaaattcc 453  Q
    |||||||||||||||||||||   |||||||||| ||| ||| ||||||||||||    ||| ||| ||||| ||||  |||| ||||||||| | ||||    
T  6426689 aggtatttgtgaagttttaaggaaatgttgtaagcttaaacatttgaacttagctttctgttcaaacgtgaaactac-atggaatgaactttgcagttcc 6426591  T
Q  454 caaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgca 540  Q
    | | |||||||||||||| |||||| | ||||| ||||||||||||||  |  ||| ||||||||||| ||||||| || |||||||    
T  6426590 cgagctggaggtgttgaatttgtcaaacacaagcattgatgatgaaactttttatgcgatctcaaagaattgttgtcggattttgca 6426504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 355 - 540
Target Start/End: Complemental strand, 6416146 - 6415959
Alignment:
Q  355 gaaggtatttgtgaagttttaag---atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctactttggactgaactttgaaatt 451  Q
    |||||||||||| |||||||||    ||||||||||||| | || |||||||||||   | ||  |||||||||||||| | ||| || |||||| | ||    
T  6416146 gaaggtatttgtcaagttttaaagatatgttgtaagattgggcatttgaacttagccttttgtaaaaaagtgaagctacat-ggaatggactttgtagtt 6416048  T
Q  452 cccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgca 540  Q
    ||||| ||||||||||||||||||||| ||||||   || ||||| |||| ||| ||||||||||||||| |||| | |||||||||||    
T  6416047 cccaacctggaggtgttgaacttgtcaaatacaaaggttaatgataaaactctctatgtgatctcaaagaattgtagcgggcttttgca 6415959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 360 - 588
Target Start/End: Complemental strand, 19632611 - 19632384
Alignment:
Q  360 tatttgtgaagttttaagatgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctactttggactgaactttgaaattcccaaact 459  Q
    ||||||| |||||||||||||||||||||| |  || ||||||||| ||||  ||| || ||| || |||||| ||| | ||||||  | ||||||| ||    
T  19632611 tatttgtcaagttttaagatgttgtaagataacgcatttgaacttaactcgatgttcaatagttaacctactt-ggaataaactttctagttcccaagct 19632513  T
Q  460 ggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgcacttgttacaaaaacgttgt 559  Q
     ||||||||| |||||||  ||||||   ||||||||||   |||   |||||||||||||| ||||||||||||||||||  | ||||  |||  ||||    
T  19632512 agaggtgttggacttgtcgtatacaaaggttgatgatgagcaactttttgtgatctcaaagaattgttgtgggcttttgcaactcttactgaaaaattgt 19632413  T
Q  560 aaaaatatcacagagaagggagtgaaaca 588  Q
       ||||||||||||||||||||||||||    
T  19632412 gctaatatcacagagaagggagtgaaaca 19632384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 438 - 540
Target Start/End: Complemental strand, 6423312 - 6423210
Alignment:
Q  438 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggctttt 537  Q
    |||||||| || ||||||| ||||||||||||||||||||| |||||||  ||   ||| |||||||| ||| |||||||||||||||||||||| ||||    
T  6423312 tgaacttttaagttcccaagctggaggtgttgaacttgtcaaatacaagagttagcgataaaacactctatgcgatctcaaagagttgttgtgggatttt 6423213  T
Q  538 gca 540  Q
    |||    
T  6423212 gca 6423210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 438 - 540
Target Start/End: Original strand, 11936279 - 11936381
Alignment:
Q  438 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggctttt 537  Q
    ||||||||||| |||||||||||||||||||| ||||||||  ||||||  |||| ||| || ||||| ||  |||||||||||||||| ||||||||||    
T  11936279 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgataaatcactctattggatctcaaagagttgtagtgggctttt 11936378  T
Q  538 gca 540  Q
    |||    
T  11936379 gca 11936381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 438 - 540
Target Start/End: Original strand, 11948259 - 11948361
Alignment:
Q  438 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggctttt 537  Q
    ||||||||||| |||||||||||||||||||| ||||||||  ||||||  |||| ||| || ||||| ||  |||||||||||||||| ||||||||||    
T  11948259 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgataaatcactctattggatctcaaagagttgtagtgggctttt 11948358  T
Q  538 gca 540  Q
    |||    
T  11948359 gca 11948361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 355 - 627
Target Start/End: Original strand, 7994101 - 7994375
Alignment:
Q  355 gaaggtatttgtgaagttttaag---atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctactttggactgaactttgaaatt 451  Q
    |||||||||||| | ||||||||   |||||||||||| || || |||||| ||||   | ||  || ||||||||||||  ||| ||||||||| | ||    
T  7994101 gaaggtatttgttacgttttaaggaaatgttgtaagatcaggcatttgaacatagccgattgtacaagagtgaagctacta-ggaatgaactttgtagtt 7994199  T
Q  452 cccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgcacttgttacaaa 551  Q
    || || || |||||||||||| ||||| |||||||  || |||| ||||||||  ||||||||||||||| ||||| ||| ||||||||  | ||||       
T  7994200 ccgaagctagaggtgttgaacatgtcaaatacaagggttaatgacgaaacactatatgtgatctcaaagaattgttctggacttttgcaactattacttg 7994299  T
Q  552 aacgttgtaaaaatatcacagagaagggagtgaaacatatagaagaaaactgctcgcaactgagagaaattaattt 627  Q
    ||| ||||||  || | || ||| |||||||||||||| | | |||||||||| ||||||||| ||| ||| ||||    
T  7994300 aactttgtaatgatgttaccgaggagggagtgaaacatgtggtagaaaactgcacgcaactgaaagagatttattt 7994375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 461 - 629
Target Start/End: Complemental strand, 14818454 - 14818287
Alignment:
Q  461 gaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgcacttgttacaaaaacgttgta 560  Q
    |||||||||||||| ||| ||||||   ||||| ||||||||||  || ||||||| |||| ||||| |||||||||||  || ||||   ||  |||||    
T  14818454 gaggtgttgaacttatcaaatacaaaggttgataatgaaacactttatatgatctccaagaattgttctgggcttttgcgattattacttgaaaattgta 14818355  T
Q  561 aaaatatcacagagaagggagtgaaacatatagaagaaaactgctcgcaactgagagaaattaatttgg 629  Q
    | ||| ||||||||||||| ||||||||| ||| |||||||||| | || ||||||| |||||||||||    
T  14818354 ataatgtcacagagaagggtgtgaaacatgtagtagaaaactgcacacagctgagag-aattaatttgg 14818287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 355 - 537
Target Start/End: Original strand, 6594525 - 6594709
Alignment:
Q  355 gaaggtatttgtgaagttttaag---atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctactttggactgaactttgaaatt 451  Q
    |||||||||||| ||||||||||   ||||| |||||||| ||| ||| ||||| |  |  ||| || ||||||||||| | ||| | ||||||  | ||    
T  6594525 gaaggtatttgtcaagttttaaggagatgttataagattacacatttgtacttatccgggtgttcaagagtgaagctacat-ggaataaactttttagtt 6594623  T
Q  452 cccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggctttt 537  Q
    |||||||||||||||||| |||||||| |||||    |||||||||| |||||   |||||||||||||| |||||||||||||||    
T  6594624 cccaaactggaggtgttgtacttgtcaaatacagaggttgatgatgagacactacgtgtgatctcaaagaattgttgtgggctttt 6594709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 440 - 534
Target Start/End: Original strand, 6596934 - 6597028
Alignment:
Q  440 aactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggct 534  Q
    ||||||||||||||| | |||||||||||||||||||||  ||||| | ||||||||||||||||| | |  |||||||||| ||||| ||||||    
T  6596934 aactttgaaattccccagctggaggtgttgaacttgtcaagtacaaatgttgatgatgaaacactctacgctatctcaaagaattgttctgggct 6597028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 440 - 538
Target Start/End: Complemental strand, 14802429 - 14802331
Alignment:
Q  440 aactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttg 538  Q
    ||||||||| |||||||  |||| |||||||| |||||| ||||||   ||||||||||||||||| ||||||| ||||||| ||||||||| ||||||    
T  14802429 aactttgaagttcccaagatggaagtgttgaatttgtcaaatacaaaggttgatgatgaaacactctatgtgatttcaaagaattgttgtggtcttttg 14802331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 375 - 604
Target Start/End: Original strand, 6589265 - 6589493
Alignment:
Q  375 aagatgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctactttggactgaactttgaaattcccaaactggaggtgttgaactt 474  Q
    |||||||||||||||||| || |||||||||||     ||   ||||||||||||||| ||| ||||||||| | ||||||  |||||||||||||||||    
T  6589265 aagatgttgtaagattaggcatttgaacttagccttctgtaagaaagtgaagctactt-ggaatgaactttgtagttcccatgctggaggtgttgaactt 6589363  T
Q  475 gtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgcacttgttacaaaaacgttgtaaaaatatcacagag 574  Q
    |||| |||||| | || ||||| |||||||  || |||||||||| | ||||   |||||| |||| || | ||   ||| ||||||  || |||| |||    
T  6589364 gtcaaatacaaatgttaatgataaaacactatatctgatctcaaaaaattgtatagggcttatgcaattatcacttcaactttgtaattatgtcacggag 6589463  T
Q  575 aagggagtgaaacatatagaagaaaactgc 604  Q
     |||||||||||||| | | ||||||||||    
T  6589464 gagggagtgaaacatgtggtagaaaactgc 6589493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 433 - 525
Target Start/End: Complemental strand, 12102366 - 12102274
Alignment:
Q  433 tggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttg 525  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||||| |  ||||| | |||  |||| || |||| |||||||||||    
T  12102366 tggattgaactttgaagttcccaaactggaggtgttgaacttgtcacatacatgagttgataacgaagaactctatctgatttcaaagagttg 12102274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 450 - 526
Target Start/End: Complemental strand, 28935132 - 28935056
Alignment:
Q  450 ttcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgt 526  Q
    ||||| |||| ||||||||||||||||||||||||||  |||| |||||| |||||| |||||| ||||||||||||    
T  28935132 ttccccaactcgaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttgt 28935056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 433 - 540
Target Start/End: Complemental strand, 9411455 - 9411348
Alignment:
Q  433 tggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtggg 532  Q
    |||| ||||||||||  ||||||| ||||||||||||||||||||| ||||| || ||   ||||||| |||| ||| ||||||||||| |||| ||||     
T  9411455 tggattgaactttgaggttcccaagctggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtgga 9411356  T
Q  533 cttttgca 540  Q
    ||||||||    
T  9411355 cttttgca 9411348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 448 - 538
Target Start/End: Original strand, 10579750 - 10579840
Alignment:
Q  448 aattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttg 538  Q
    ||||||| | ||||||||||||||||||||| ||||||   |||||||| |||||||| ||  ||||||||||| ||||||| ||||||||    
T  10579750 aattccccagctggaggtgttgaacttgtcatatacaaaagttgatgataaaacactctattcgatctcaaagaattgttgtcggcttttg 10579840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 440 - 629
Target Start/End: Complemental strand, 14820786 - 14820597
Alignment:
Q  440 aactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgc 539  Q
    ||||||| | |||||||  | |||||||||||||| ||| ||||||   ||||| ||||||||||  || ||||||| |||| |||||||||||||||||    
T  14820786 aactttgcagttcccaagttagaggtgttgaacttatcaaatacaaaggttgataatgaaacactttatatgatctccaagaattgttgtgggcttttgc 14820687  T
Q  540 acttgttacaaaaacgttgtaaaaatatcacagagaagggagtgaaacatatagaagaaaactgctcgcaactgagagaaattaatttgg 629  Q
      || ||||   ||   |||||  || ||||||||||||| ||||||||| | | | |||||||| | || |||||||| ||||||||||    
T  14820686 gattattacttgaaaaatgtaatgatgtcacagagaagggtgtgaaacatgtggtaaaaaactgcacacagctgagagagattaatttgg 14820597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 438 - 538
Target Start/End: Original strand, 6603206 - 6603306
Alignment:
Q  438 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggctttt 537  Q
    ||||||||| | ||||||| ||  |||||||| ||||| || ||||| || |||||||||||||| || ||| ||||||||||||||||  |||||||||    
T  6603206 tgaactttgtacttcccaagctacaggtgttggacttggcagatacaggtgttgatgatgaaacagtctatgcgatctcaaagagttgtcctgggctttt 6603305  T
Q  538 g 538  Q
    |    
T  6603306 g 6603306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 266 - 329
Target Start/End: Complemental strand, 9411619 - 9411556
Alignment:
Q  266 ttaagagatgaaaccatcaaaatattttcttcgattttccccaatttgcaactgcttgatttga 329  Q
    ||||||||| ||| ||||||||  ||| |||| ||||||||||||||||| |||||||||||||    
T  9411619 ttaagagataaaaacatcaaaaggtttgcttccattttccccaatttgcagctgcttgatttga 9411556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 227 - 328
Target Start/End: Complemental strand, 6432464 - 6432363
Alignment:
Q  227 cctcaattaaagtcactctgtttgactcacaattcacgcttaagagatgaaaccatcaaaatattttcttcgattttccccaatttgcaactgcttgatt 326  Q
    ||||| |||||||| |||| ||||  |||||||||| | |||||  ||||||  |||| ||| ||| |||| |||||||||||||||||||  |||||||    
T  6432464 cctcagttaaagtctctctatttgggtcacaattcatggttaaggaatgaaaggatcataatgtttgcttccattttccccaatttgcaacatcttgatt 6432365  T
Q  327 tg 328  Q
    ||    
T  6432364 tg 6432363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 467 - 540
Target Start/End: Complemental strand, 491562 - 491486
Alignment:
Q  467 ttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctca---aagagttgttgtgggcttttgca 540  Q
    ||||||||||||||||||||| || | |||| ||||||| |||||||| ||   |||||||||| ||| ||||||||    
T  491562 ttgaacttgtcacatacaagtgttaaagatggaacactctatgtgatcacaattaagagttgttctggacttttgca 491486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 432 - 484
Target Start/End: Complemental strand, 9410803 - 9410751
Alignment:
Q  432 ttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacataca 484  Q
    ||||| |||||||||||  ||||||  ||||||||||||| ||||||||||||    
T  9410803 ttggattgaactttgaagctcccaagttggaggtgttgaatttgtcacataca 9410751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 355 - 540
Target Start/End: Complemental strand, 10614773 - 10614586
Alignment:
Q  355 gaaggtatttgtgaagttttaag---atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctactttggactgaactttgaaatt 451  Q
    |||||||||||| ||||||||||   ||||||||||||||| || |||||||||||   | ||  |||||||||||||||| ||| ||||| |||   ||    
T  10614773 gaaggtatttgtcaagttttaaggatatgttgtaagattaggcatttgaacttagcctattgtaaaaaagtgaagctactt-ggaatgaacgttgttgtt 10614675  T
Q  452 cccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgca 540  Q
    ||||| ||||||||||||||||||||| |||| |   || ||||| |||||||| |||||||||| ||||  ||| |||||||||||||    
T  10614674 cccaatctggaggtgttgaacttgtcaaatacgaaggttaatgataaaacactctatgtgatctcgaagaactgtagtgggcttttgca 10614586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 356 - 540
Target Start/End: Original strand, 15092071 - 15092257
Alignment:
Q  356 aaggtatttgtgaagttttaag---atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctactttggactgaactttgaaattc 452  Q
    ||||||||| | ||||||||||   ||||| |||| ||| ||| ||||||||| || |  ||||||  ||||| |||| | ||| ||||||||| | |||    
T  15092071 aaggtatttctcaagttttaaggaaatgttataagcttaaacatttgaacttaactggatgtttaagtgtgaaactacat-ggaatgaactttgcagttc 15092169  T
Q  453 ccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgca 540  Q
    || | |||||||||||||| |||||| | ||||   || ||||| |||||||| ||| ||||||||||| ||||||||||||||||||    
T  15092170 ccgagctggaggtgttgaatttgtcagaaacaaaggttaatgataaaacactctatgcgatctcaaagaattgttgtgggcttttgca 15092257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 309
Target Start/End: Original strand, 15091947 - 15092029
Alignment:
Q  227 cctcaattaaagtcactctgtttgactcacaattcacgcttaagagatgaaaccatcaaaatattttcttcgattttccccaa 309  Q
    |||||||||||||| |||| |||| |||||||||  || ||||| ||||||| ||||| |||| || |||| |||||||||||    
T  15091947 cctcaattaaagtctctctatttggctcacaattaccggttaagtgatgaaatcatcagaatacttgcttccattttccccaa 15092029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 567 - 615
Target Start/End: Original strand, 10170214 - 10170262
Alignment:
Q  567 tcacagagaagggagtgaaacatatagaagaaaactgctcgcaactgag 615  Q
    |||||||||| |||||||||||| |  ||||||||||||| ||||||||    
T  10170214 tcacagagaaaggagtgaaacatgtgaaagaaaactgctcacaactgag 10170262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 567 - 615
Target Start/End: Original strand, 10177739 - 10177787
Alignment:
Q  567 tcacagagaagggagtgaaacatatagaagaaaactgctcgcaactgag 615  Q
    |||||||||| |||||||||||| |  ||||||||||||| ||||||||    
T  10177739 tcacagagaaaggagtgaaacatgtgaaagaaaactgctcacaactgag 10177787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 301 - 329
Target Start/End: Complemental strand, 10614822 - 10614794
Alignment:
Q  301 tttccccaatttgcaactgcttgatttga 329  Q
    |||||||||||||||||||||||||||||    
T  10614822 tttccccaatttgcaactgcttgatttga 10614794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 345 - 537
Target Start/End: Original strand, 1037573 - 1037767
Alignment:
Q  345 catatcagacgaaggtatttgtgaagttttaag---atgttgtaagattagacagttgaacttagc-tcgtagtttaaaagtgaagctactttggactga 440  Q
    |||||| || |||||||||||||||||||||||   |||||||||| ||||||| ||||| ||||| |  || || || |||||| |||||| | | | |    
T  1037573 catatctgaagaaggtatttgtgaagttttaaggagatgttgtaaggttagacatttgaatttagcctacta-ttcaagagtgaaactacttagaa-taa 1037670  T
Q  441 actttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggctttt 537  Q
    ||||| || ||||  || | |||||||| ||||||||||||||| || ||||||||||||||||| || |||||||||||| |||||||||||||||    
T  1037671 actttaaagttcctgaattagaggtgtttaacttgtcacatacatgtgttgatgatgaaacactctatatgatctcaaagaattgttgtgggctttt 1037767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 440 - 540
Target Start/End: Original strand, 45245091 - 45245191
Alignment:
Q  440 aactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgc 539  Q
    ||||||||| |||| ||||| ||||||||||| |||||| | ||||   ||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  45245091 aactttgaagttccaaaacttgaggtgttgaatttgtcagagacaatggttgatgatgaaacactccatgtgatctcaaagagttgtcgtgggcttttgc 45245190  T
Q  540 a 540  Q
    |    
T  45245191 a 45245191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 196 - 518
Target Start/End: Original strand, 32785537 - 32785856
Alignment:
Q  196 ttctaattctttcatggaccttgttgtaagacctcaattaaagtcactctgtttgactcacaattcacgcttaagagatgaaaccatcaaaatattttct 295  Q
    |||||||||||| |||||  |||||||||  |||||||||||||  |||  |||| ||| |||||   | ||||||||||||| |||||  || ||||||    
T  32785537 ttctaattctttgatggattttgttgtaatccctcaattaaagtttctccatttggctcgcaattattggttaagagatgaaagcatcaggatgttttct 32785636  T
Q  296 tcgattttccccaatttgcaactgcttgatttgattaggtac-gcagtggcatatcagacgaaggtatttgtgaagttttaagatgttgtaagattagac 394  Q
    || |||||  ||||||||||||| ||||||||||   | ||  ||  |  |||||| || |||||||||||| || |||||||||||| |||||||||||    
T  32785637 tctattttttccaatttgcaactacttgatttga---gctattgctataacatatctgaagaaggtatttgtcaatttttaagatgttctaagattagac 32785733  T
Q  395 agttgaacttagctcgtagtttaaaagtgaagctactttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatg 494  Q
    | ||||| || |  |    || || | |  ||| ||  | || |||||||| ||  ||||||||| |||||||||||||||||||||||||| |||||||    
T  32785734 atttgaatttggaccacttttcaagaatcgagc-accgtcgaatgaactttaaagctcccaaactagaggtgttgaacttgtcacatacaagaattgatg 32785832  T
Q  495 atgaaacactcaatgtgatctcaa 518  Q
    ||||| ||||  ||||||||||||    
T  32785833 atgaagcactttatgtgatctcaa 32785856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 7e-23; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 432 - 619
Target Start/End: Original strand, 19468497 - 19468684
Alignment:
Q  432 ttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgg 531  Q
    ||||| ||||||||| | ||||||| |||||||||||||| |||||| ||||||   ||||||||||||||||  |||||||||||||||  ||||||||    
T  19468497 ttggagtgaactttgtagttcccaagctggaggtgttgaagttgtcagatacaaaggttgatgatgaaacactttatgtgatctcaaagaactgttgtgg 19468596  T
Q  532 gcttttgcacttgttacaaaaacgttgtaaaaatatcacagagaagggagtgaaacatatagaagaaaactgctcgcaactgagagaa 619  Q
     |||||| | || ||     |  |||||||  || |||||||||| |||||||||||| |  ||||||| ||||| ||||||||||||    
T  19468597 acttttggaattatttgtggacggttgtaatgatgtcacagagaaaggagtgaaacatgtgaaagaaaattgctcacaactgagagaa 19468684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 438 - 532
Target Start/End: Complemental strand, 52082676 - 52082582
Alignment:
Q  438 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtggg 532  Q
    |||||||| || || ||||| |||||||||||||||||||| | ||||  ||||||||||||||| |  ||||||||||||||||||||||||||    
T  52082676 tgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 52082582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 467 - 628
Target Start/End: Complemental strand, 7554554 - 7554393
Alignment:
Q  467 ttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgcacttgttacaaaaacgttgtaaaaata 566  Q
    |||||||| ||| |||||||| ||||||||||| ||||| || ||||||||||||||||| |||| ||||| ||  ||||||  ||| | ||| | |||     
T  7554554 ttgaacttatcatatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttactgaaaggatgtgataatg 7554455  T
Q  567 tcacagagaagggagtgaaacatatagaagaaaactgctcgcaactgagagaaattaatttg 628  Q
    ||||||| ||||||||||| ||| | | |||||||||| ||| ||| | ||| |||||||||    
T  7554454 tcacagaaaagggagtgaagcatgtggtagaaaactgcacgctactcaaagagattaatttg 7554393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 354 - 534
Target Start/End: Complemental strand, 52092955 - 52092776
Alignment:
Q  354 cgaaggtatttgtgaagttttaagatgttgtaagattagacagttgaactt-agctcgtagtttaaaagtgaagctactttggactgaactttgaaattc 452  Q
    ||||||||||  ||||||||||||||||||||| ||||  || |||||||| || || | ||  || | |||| |||||||  | |||||||| || ||     
T  52092955 cgaaggtattgttgaagttttaagatgttgtaaaattactcatttgaacttgagatcttggtc-aacattgaatctactttcaa-tgaactttcaagttt 52092858  T
Q  453 ccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggct 534  Q
    ||||| ||||||||||||||||| || | ||||  ||||||||||| ||| |  |||||||||||||||||| |||||||||    
T  52092857 ccaaattggaggtgttgaacttggcaaagacaaaaattgatgatgacacattgtatgtgatctcaaagagtttttgtgggct 52092776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 191 - 325
Target Start/End: Complemental strand, 9581410 - 9581276
Alignment:
Q  191 gagacttctaattctttcatggaccttgttgtaagacctcaattaaagtcactctgtttgactcacaattcacgcttaagagatgaaaccatcaaaatat 290  Q
    |||| |||||| ||||||| |||  ||| |||||| |||||||||||||| ||   ||||  |||||||  | | ||||||||| ||| ||||| ||| |    
T  9581410 gagaattctaagtctttcaaggatattggtgtaagccctcaattaaagtctcttgatttgggtcacaatcaatgtttaagagataaaaacatcataatgt 9581311  T
Q  291 tttcttcgattttccccaatttgcaactgcttgat 325  Q
    || |||| ||||||||||||||||| |||||||||    
T  9581310 ttgcttcaattttccccaatttgcagctgcttgat 9581276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 329
Target Start/End: Original strand, 19468295 - 19468397
Alignment:
Q  227 cctcaattaaagtcactctgtttgactcacaattcacgcttaagagatgaaaccatcaaaatattttcttcgattttccccaatttgcaactgcttgatt 326  Q
    |||||||||||||  ||||  ||| || | |||||| | ||||| ||||||| ||||| ||| ||| |||| ||||| ||||||||||| ||||||||||    
T  19468295 cctcaattaaagtatctctacttggctgagaattcatggttaagcgatgaaaacatcataatgtttgcttccatttttcccaatttgcagctgcttgatt 19468394  T
Q  327 tga 329  Q
    |||    
T  19468395 tga 19468397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 467 - 589
Target Start/End: Original strand, 29718956 - 29719078
Alignment:
Q  467 ttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgcacttgttacaaaaacgttgtaaaaata 566  Q
    |||||||||||| |||| |   |||||||| || ||||| || | || |||| |||||||||||| |||||||| |||||||   || ||||||  |||     
T  29718956 ttgaacttgtcatataccaacgttgatgataaatcactccatatcatatcaacgagttgttgtggccttttgcaattgttactggaaagttgtatgaatg 29719055  T
Q  567 tcacagagaagggagtgaaacat 589  Q
    |||||||||| ||||||||||||    
T  29719056 tcacagagaatggagtgaaacat 29719078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 443 - 540
Target Start/End: Complemental strand, 9586729 - 9586632
Alignment:
Q  443 tttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgca 540  Q
    |||||| | ||||| || |||||||||||||||||| |||||  | || |||||||||||||  |||||| ||||| || |||| |||| ||||||||    
T  9586729 tttgaagtccccaagctagaggtgttgaacttgtcatatacagatgttaatgatgaaacactttatgtgacctcaatgaattgtcgtggacttttgca 9586632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 325
Target Start/End: Complemental strand, 9586953 - 9586844
Alignment:
Q  216 ttgttgtaagacctcaattaaagtcactctgtttgactcacaattcacgcttaagagatgaaaccatcaaaatattttcttcgattttccccaatttgca 315  Q
    ||||||||||||||||||| ||||| ||   ||||  || ||||  | | ||||||||| ||| ||||| ||| ||| |||| |||||||||||||||||    
T  9586953 ttgttgtaagacctcaattgaagtctcttgatttgggtcgcaatcaatggttaagagataaaaacatcataatgtttgcttcaattttccccaatttgca 9586854  T
Q  316 actgcttgat 325  Q
     |||||||||    
T  9586853 gctgcttgat 9586844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 614
Target Start/End: Original strand, 29658929 - 29659076
Alignment:
Q  467 ttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgcacttgttacaaaaacgttgtaaaaata 566  Q
    |||||||||||| |||| |   |||||||| || ||||| || | || |||| |||||||||||| |||||||| |||||||   || ||||||  |||     
T  29658929 ttgaacttgtcatataccaaagttgatgataaagcactccatatcatatcaacgagttgttgtggccttttgcaattgttactggaatgttgtacgaatg 29659028  T
Q  567 tcacagagaagggagtgaaacatatagaagaaaactgctcgcaactga 614  Q
    |||||||||| ||||| |||||| | |   |||||||| |||||||||    
T  29659029 tcacagagaatggagtaaaacatgtggttcaaaactgcacgcaactga 29659076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 345 - 534
Target Start/End: Original strand, 533 - 724
Alignment:
Q  345 catatcagacgaaggtatttgtgaagttttaag---atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctactttggactgaa 441  Q
    |||||| || |||||||||||||||||| ||||   ||||||||||  |||||| ||||| |||||     ||| || |||||| |||||| | | | ||    
T  533 catatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggctagacatttgaatttagcctactgttcaagagtgaaactacttagaa-taaa 631  T
Q  442 ctttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggct 534  Q
    |||| || ||||  || | |||||||| |||||||||||||||||| | ||||||||||||||| || ||||||| |||| ||||||||||||    
T  632 ctttaaagttcctgaattagaggtgtttaacttgtcacatacaagtgtcgatgatgaaacactctatatgatctcgaagaattgttgtgggct 724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 461 - 541
Target Start/End: Complemental strand, 39256 - 39176
Alignment:
Q  461 gaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgcac 541  Q
    ||||||||||||||| ||  |||||   || |||||||||||||  |||||||||||||||||||| ||||||||||||||    
T  39256 gaggtgttgaacttgacatttacaaaggttaatgatgaaacactttatgtgatctcaaagagttgtagtgggcttttgcac 39176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 448 - 545
Target Start/End: Complemental strand, 88924 - 88827
Alignment:
Q  448 aattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgcacttgt 545  Q
    ||||| |||||||||||| ||||||||||||   ||||  || || |||||| ||||| |||||||||||||||| |||  |||||||||||| ||||    
T  88924 aattcacaaactggaggtattgaacttgtcaagaacaatcatagacgatgaagcactccatgtgatctcaaagaggtgtcatgggcttttgcaattgt 88827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0807 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 438 - 527
Target Start/End: Original strand, 1468 - 1560
Alignment:
Q  438 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgat---gatgaaacactcaatgtgatctcaaagagttgtt 527  Q
    ||||||||| | |||| || || ||||||||| |||||||| |||||| | |||||   |||||||||||| ||||||||||||||| |||||    
T  1468 tgaactttgtagttcctaagctagaggtgttggacttgtcaaatacaaatgttgatgatgatgaaacactctatgtgatctcaaagaattgtt 1560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 265 times since January 2019
Visitors: 1022