View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9325-LTR4-TNT-insertion-4 (Length: 217)
Name: F9325-LTR4-TNT-insertion-4
Description: F9325-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9325-LTR4-TNT-insertion-4 |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 5e-92; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 10 - 207
Target Start/End: Complemental strand, 1542035 - 1541838
Alignment:
| Q |
10 |
tcaacatgtggcatgaaattgaaaagtagaaagaaaattcaggagcaaagtatagaccagggcaatggagtggtgatacttcaatatttgatatcatagg |
109 |
Q |
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| T |
1542035 |
tcaacatgtggcatgaaattgaaaagtagaaagaaaattcaggagcaaagtatagaccagggcaatggagtggtgatacttcaatatttgatatcatagg |
1541936 |
T |
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| Q |
110 |
aatgaatnnnnnnnnngcatgtttgtttgtgttgtaaatgtaataaaataattttagattatattggattaagatcacggtttatttaaatttaatta |
207 |
Q |
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| T |
1541935 |
aatgaataaaaaaaaagcatgtttgtttgtgttgtaaatgtaataaaataattttagattatattggattaagatcacggtttatttaaatttaatta |
1541838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 126 - 206
Target Start/End: Original strand, 23031350 - 23031430
Alignment:
| Q |
126 |
gcatgtttgtttgtgttgtaaatgtaataaaataattttagattatattggattaagatcacggtttatttaaatttaatt |
206 |
Q |
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| T |
23031350 |
gcatgtttgtttgtgatgtaaatgtaataaaataattttagattataatggattaagatcacagttgatttaaatttaatt |
23031430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 23031292 - 23031335
Alignment:
| Q |
10 |
tcaacatgtggcatgaaattgaaaagtagaaagaaaattcagga |
53 |
Q |
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| T |
23031292 |
tcaacatgtggcatgaaattgaaaagtagaaagaaaattcagga |
23031335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 126 - 207
Target Start/End: Original strand, 28013575 - 28013656
Alignment:
| Q |
126 |
gcatgtttgtttgtgttgtaaatgtaataaaataattttagattatattggattaagatcacggtttatttaaatttaatta |
207 |
Q |
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| T |
28013575 |
gcatgtttgtttgtgatgtaaatgtaataaaataattttagattataatggattaagatcacagtttatttaaatttaatta |
28013656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 28013517 - 28013560
Alignment:
| Q |
10 |
tcaacatgtggcatgaaattgaaaagtagaaagaaaattcagga |
53 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28013517 |
tcaacatgtggcatgaaattgaaaagtagaaagaaaattcagga |
28013560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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