View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: F9325-LTR4-TNT-insertion-4 (Length: 217)
Name: F9325-LTR4-TNT-insertion-4
Description: F9325-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] F9325-LTR4-TNT-insertion-4
Alignment Details
Target: chr8 (Bit Score: 171; Significance: 5e-92; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 10 - 207
Target Start/End: Complemental strand, 1542035 - 1541838
Alignment:
Q
10
tcaacatgtggcatgaaattgaaaagtagaaagaaaattcaggagcaaagtatagaccagggcaatggagtggtgatacttcaatatttgatatcatagg
109
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
1542035
tcaacatgtggcatgaaattgaaaagtagaaagaaaattcaggagcaaagtatagaccagggcaatggagtggtgatacttcaatatttgatatcatagg
1541936
T
Q
110
aatgaatnnnnnnnnngcatgtttgtttgtgttgtaaatgtaataaaataattttagattatattggattaagatcacggtttatttaaatttaatta
207
Q
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
1541935
aatgaataaaaaaaaagcatgtttgtttgtgttgtaaatgtaataaaataattttagattatattggattaagatcacggtttatttaaatttaatta
1541838
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 126 - 206
Target Start/End: Original strand, 23031350 - 23031430
Alignment:
Q
126
gcatgtttgtttgtgttgtaaatgtaataaaataattttagattatattggattaagatcacggtttatttaaatttaatt
206
Q
||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||
T
23031350
gcatgtttgtttgtgatgtaaatgtaataaaataattttagattataatggattaagatcacagttgatttaaatttaatt
23031430
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 23031292 - 23031335
Alignment:
Q
10
tcaacatgtggcatgaaattgaaaagtagaaagaaaattcagga
53
Q
||||||||||||||||||||||||||||||||||||||||||||
T
23031292
tcaacatgtggcatgaaattgaaaagtagaaagaaaattcagga
23031335
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 126 - 207
Target Start/End: Original strand, 28013575 - 28013656
Alignment:
Q
126
gcatgtttgtttgtgttgtaaatgtaataaaataattttagattatattggattaagatcacggtttatttaaatttaatta
207
Q
||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
T
28013575
gcatgtttgtttgtgatgtaaatgtaataaaataattttagattataatggattaagatcacagtttatttaaatttaatta
28013656
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 28013517 - 28013560
Alignment:
Q
10
tcaacatgtggcatgaaattgaaaagtagaaagaaaattcagga
53
Q
||||||||||||||||||||||||||||||||||||||||||||
T
28013517
tcaacatgtggcatgaaattgaaaagtagaaagaaaattcagga
28013560
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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