View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9325-LTR4-TNT-insertion-5 (Length: 71)
Name: F9325-LTR4-TNT-insertion-5
Description: F9325-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9325-LTR4-TNT-insertion-5 |
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Alignment Details
Target: chr3 (Bit Score: 54; Significance: 9e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 9e-23
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 12132394 - 12132341
Alignment:
| Q |
8 |
agaagacatgcaaaagtgcttcttggcaaatttgggatcagatatgagagaatt |
61 |
Q |
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| T |
12132394 |
agaagacatgcaaaagtgcttcttggcaaatttgggatcagatatgagagaatt |
12132341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 1078936 - 1078982
Alignment:
| Q |
12 |
gacatgcaaaagtgcttcttggcaaatttgggatcagatatgagaga |
58 |
Q |
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| T |
1078936 |
gacatgcaaaagtgtttcttggcaaacttgggatcagatacgagaga |
1078982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 23764981 - 23765022
Alignment:
| Q |
20 |
aaagtgcttcttggcaaatttgggatcagatatgagagaatt |
61 |
Q |
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| T |
23764981 |
aaagtgcttcttggcgaatttgggatcagaaattagagaatt |
23765022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 23814829 - 23814870
Alignment:
| Q |
20 |
aaagtgcttcttggcaaatttgggatcagatatgagagaatt |
61 |
Q |
| |
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||||||||||||||| |||||||||||||| || |||||||| |
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|
| T |
23814829 |
aaagtgcttcttggcgaatttgggatcagaaattagagaatt |
23814870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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