View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9325-LTR4-TNT-insertion-6 (Length: 592)
Name: F9325-LTR4-TNT-insertion-6
Description: F9325-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9325-LTR4-TNT-insertion-6 |
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Alignment Details
Target: chr5 (Bit Score: 575; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 10 - 584
Target Start/End: Original strand, 29010899 - 29011473
Alignment:
| Q |
10 |
gttatcaccaaacataacagcaccagctgctaatgctccagcaccggctcccattgcaaatcctggaggtcccctctgcctaggagctgttcctgatgat |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29010899 |
gttatcaccaaacataacagcaccagctgctaatgctccagcaccggctcccattgcaaatcctggaggtcccctctgcctaggagctgttcctgatgat |
29010998 |
T |
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| Q |
110 |
gatggcatattgaaataactcgacgccaatccattattactttgatgaaaattgggaggataaccaacatttgaagttggaggtggtggtggagttcttg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29010999 |
gatggcatattgaaataactcgacgccaatccattattactttgatgaaaattgggaggataaccaacatttgaagttggaggtggtggtggagttcttg |
29011098 |
T |
|
| Q |
210 |
gtggttggtaacttggtccagaagctgcagggtagcttggtccacccacataagggttagaatagtttgtaggatatggcactggatgtgaatagggtac |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29011099 |
gtggttggtaacttggtccagaagctgcagggtagcttggtccacccacataagggttagaatagtttgtaggatatggcactggatgtgaatagggtac |
29011198 |
T |
|
| Q |
310 |
attagtctgtgcttgtttatgaggtccattgaacgaagctggatccatttgttggtgatagccttgtccaaatctacccttattaccattatctaagagc |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29011199 |
attagtctgtgcttgtttatgaggtccattgaacgaagctggatccatttgttggtgatagccttgtccaaatctacccttattaccattatctaagagc |
29011298 |
T |
|
| Q |
410 |
tctattcctcctccattacctgcatcacaaatatatatagtgccactaattacatgtttattgttgaaaatatttcctttgatttcctatccaacataag |
509 |
Q |
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| T |
29011299 |
tctattcctcctccattacctgcatcacaaatatatatagtgccactaattacatgtttattgttgaaaatatttcctttgatttcctatccaacataag |
29011398 |
T |
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| Q |
510 |
gattcactgatttctattttctacttcgaacattcattcatgaaagcattgtactgccttccaagttccaattgg |
584 |
Q |
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| T |
29011399 |
gattcactgatttctattttctacttcgaacattcattcatgaaagcattgtactgccttccaagttccaattgg |
29011473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 16 - 453
Target Start/End: Original strand, 29014225 - 29014654
Alignment:
| Q |
16 |
accaaacataacagcaccagctgct--aatgctccagcaccggctcccattgcaaatcctggaggtcccctctgcctaggagctgttcctgatgatgatg |
113 |
Q |
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|||||||||||||||||||||||| |||||||||||||| ||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29014225 |
accaaacataacagcaccagctgcacaaatgctccagcacctgctcctattgcgaaacctggaggtcccctctgcctaggagctgttcctgatgatgatg |
29014324 |
T |
|
| Q |
114 |
gcatattgaaataactcgacgccaatccattattactttgatgaaaattgggaggataaccaacatttgaagttggaggtggtggtggagttcttggtgg |
213 |
Q |
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||||||| |||||||||| | |||||||| ||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| || |
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| T |
29014325 |
gcatattaaaataactcggtgtcaatccatcattacttcgatgaaaattgggaacataaccaacatttgaaggtggaggtggtggtggaggagtt----- |
29014419 |
T |
|
| Q |
214 |
ttggtaacttggtccagaagctgcagggtagcttggtccacccacataagggttagaatagtttgtaggatatggcactggatgtgaatagg--gtacat |
311 |
Q |
| |
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|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||| |
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| T |
29014420 |
-------cttggtccagaagctgcaggatagtttggtccacccacataagggttagaatagtttgtaggaataggcactggatgtgatcaggcggtacat |
29014512 |
T |
|
| Q |
312 |
tagtctgtgcttgtttatgaggtccattgaacgaagctggatccatttgttggtgatagccttgtccaaatctacccttattaccattatctaagagctc |
411 |
Q |
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| T |
29014513 |
tcgtttgtgcttgtttatgaggtccattgaacgaagctggatccatttgttagtgataaccttgtccaaatccgcccttattagcattatttaagagctc |
29014612 |
T |
|
| Q |
412 |
tattcctcctccattacctgcatcacaaatatatatagtgcc |
453 |
Q |
| |
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|||||||||||||| ||||||||| |||| ||||||| |||| |
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| T |
29014613 |
tattcctcctccatgacctgcatcgcaaacatatataatgcc |
29014654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 286 - 413
Target Start/End: Original strand, 24081872 - 24082001
Alignment:
| Q |
286 |
tggcactggatgtgaatagg--gtacattagtctgtgcttgtttatgaggtccattgaacgaagctggatccatttgttggtgatagccttgtccaaatc |
383 |
Q |
| |
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|||||||||||| || |||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||| ||| |
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| T |
24081872 |
tggcactggatgcgagtaggcggtacattcgtttgtgcttgtttatgaggtccattgaacgaagctggatccatttcttagtgataaccttgtccagatc |
24081971 |
T |
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| Q |
384 |
tacccttattaccattatctaagagctcta |
413 |
Q |
| |
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||||||||||||||||||| ||||||||| |
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| T |
24081972 |
cacccttattaccattatcttagagctcta |
24082001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 54
Target Start/End: Original strand, 29010841 - 29010871
Alignment:
| Q |
24 |
taacagcaccagctgctaatgctccagcacc |
54 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
29010841 |
taacagcaccagctgctaatgctccagcacc |
29010871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 449 - 545
Target Start/End: Complemental strand, 24003490 - 24003394
Alignment:
| Q |
449 |
gtgccactaattacatgtttattgttgaaaatatttcctttgatttcctatccaacataaggattcactgatttctattttctacttcgaacattca |
545 |
Q |
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||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||| ||| || |||||||| ||||||| ||||||||| |
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| T |
24003490 |
gtgccactaattacaggtttattgatgaaaatatttccttctatttcctatccaacataaatgctcattggtttctattatctactttgaacattca |
24003394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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