View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9325-LTR4-TNT-insertion-7 (Length: 239)

Name: F9325-LTR4-TNT-insertion-7
Description: F9325-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9325-LTR4-TNT-insertion-7
F9325-LTR4-TNT-insertion-7
[»] chr6 (12 HSPs)
chr6 (9-230)||(14022121-14022342)
chr6 (13-230)||(13875741-13875959)
chr6 (13-230)||(13931769-13931987)
chr6 (14-231)||(14024688-14024906)
chr6 (13-230)||(14046810-14047028)
chr6 (13-230)||(14109882-14110100)
chr6 (13-230)||(13473429-13473647)
chr6 (13-230)||(13863271-13863489)
chr6 (13-230)||(13893445-13893663)
chr6 (14-230)||(14084077-14084294)
chr6 (13-230)||(14014556-14014774)
chr6 (13-201)||(13911268-13911457)
[»] chr5 (3 HSPs)
chr5 (142-228)||(37164850-37164936)
chr5 (142-227)||(37132397-37132482)
chr5 (142-228)||(35142934-35143020)
[»] chr4 (1 HSPs)
chr4 (142-191)||(3022646-3022695)


Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 9 - 230
Target Start/End: Original strand, 14022121 - 14022342
Alignment:
Q  9 gatcgaaactttgtagctgtgtacacgttggaatctctccatataattgattatgtgacacatctaacacactaagtcgatcaatttgagaaagactaga 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14022121 gatcgaaactttgtagctgtgtacacgttggaatctctccatataattgattatgtgacacatctaacacactaagtcgatcaatttgagaaagactaga 14022220  T
Q  109 aggaattaaccacgcaacttgttttgtgataaatcaagaaagtcaagtgatgttagctttccaatatttgaaggaatttttcctgtgaagttgtttcttg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14022221 aggaattaaccacgcaacttgttttgtgataaatcaagaaagtcaagtgatgttagctttccaatatttgaaggaatttttcctgtgaagttgtttcttg 14022320  T
Q  209 ataagttcaatgagaccaattg 230  Q
    ||||||||||||||||||||||    
T  14022321 ataagttcaatgagaccaattg 14022342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 13 - 230
Target Start/End: Complemental strand, 13875959 - 13875741
Alignment:
Q  13 gaaactttgtagctgtgtacacgttggaatctctccatataattgattatgtgacacatctaacacactaagtcgatcaatttgagaaagactagaagga 112  Q
    |||||||||||| ||||||| | |||||||||||||| ||||||| |||||||||| ||||||||||| ||| || || |||||||||||||||||||||    
T  13875959 gaaactttgtagttgtgtactctttggaatctctccagataattggttatgtgacaaatctaacacaccaagccggtctatttgagaaagactagaagga 13875860  T
Q  113 att-aaccacgcaacttgttttgtgataaatcaagaaagtcaagtgatgttagctttccaatatttgaaggaatttttcctgtgaagttgtttcttgata 211  Q
    ||| |||||  |||||| |||   || |||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||| ||||||||||    
T  13875859 attgaaccaatcaacttatttctagacaaatcaagaaagtcaagtgatgttagctttccaattcttgaaggaattttccctgtgaagttatttcttgata 13875760  T
Q  212 agttcaatgagaccaattg 230  Q
    |||||||||||||||||||    
T  13875759 agttcaatgagaccaattg 13875741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 13 - 230
Target Start/End: Original strand, 13931769 - 13931987
Alignment:
Q  13 gaaactttgtagctgtgtacacgttggaatctctccatataattgattatgtgacacatctaacacactaagtcgatcaatttgagaaagactagaagga 112  Q
    |||||||||||| ||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||| |  || |||||||| ||||||| ||||    
T  13931769 gaaactttgtagttgtgtactcgttggaatctctccagataattgattatgtgacagatctaacacactaagccagtctatttgagagagactaggagga 13931868  T
Q  113 att-aaccacgcaacttgttttgtgataaatcaagaaagtcaagtgatgttagctttccaatatttgaaggaatttttcctgtgaagttgtttcttgata 211  Q
    ||| ||||| ||||||| ||| | || ||||||||| |||||||||| ||||| |||||||||||||| |||||||| ||||||||||||||||||||||    
T  13931869 attgaaccaagcaacttatttcgagacaaatcaagagagtcaagtgaagttagatttccaatatttgatggaattttccctgtgaagttgtttcttgata 13931968  T
Q  212 agttcaatgagaccaattg 230  Q
    | |||||||||||||||||    
T  13931969 aattcaatgagaccaattg 13931987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 14 - 231
Target Start/End: Original strand, 14024688 - 14024906
Alignment:
Q  14 aaactttgtagctgtgtacacgttggaatctctccatataattgattatgtgacacatctaacacactaagtcgatcaatttgagaaagactagaaggaa 113  Q
    ||||||||||| ||||||| ||||||||| |||||| |||||||||||||||||| ||||| ||||  ||||||||| ||| | ||||||||||| ||||    
T  14024688 aaactttgtagttgtgtactcgttggaatttctccagataattgattatgtgacaaatctagcacagcaagtcgatctattcgggaaagactagacggaa 14024787  T
Q  114 tt-aaccacgcaacttgttttgtgataaatcaagaaagtcaagtgatgttagctttccaatatttgaaggaatttttcctgtgaagttgtttcttgataa 212  Q
    || ||||| ||||||| ||| |||| ||||||||||||||||||||| ||| |||||||||  ||||||||||||| |||||||||||||||||||||||    
T  14024788 ttgaaccaagcaacttatttcgtgacaaatcaagaaagtcaagtgatattaactttccaattcttgaaggaattttccctgtgaagttgtttcttgataa 14024887  T
Q  213 gttcaatgagaccaattgg 231  Q
    |||||||||||||||||||    
T  14024888 gttcaatgagaccaattgg 14024906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 13 - 230
Target Start/End: Original strand, 14046810 - 14047028
Alignment:
Q  13 gaaactttgtagctgtgtacacgttggaatctctccatataattgattatgtgacacatctaacacactaagtcgatcaatttgagaaagactagaagga 112  Q
    |||||||||||| ||||||| |||||||||||  ||| |||||||||||||||||| ||||||||||||||| || || |||||||| ||||||| ||||    
T  14046810 gaaactttgtagttgtgtactcgttggaatcttgccagataattgattatgtgacagatctaacacactaagccggtctatttgagatagactaggagga 14046909  T
Q  113 att-aaccacgcaacttgttttgtgataaatcaagaaagtcaagtgatgttagctttccaatatttgaaggaatttttcctgtgaagttgtttcttgata 211  Q
    ||| ||||| ||||||| ||| |||| ||||||||  |||||||||| ||||| |||||||||||||| |||||||| |||| |||||||||||||||||    
T  14046910 attgaaccaagcaacttatttcgtgacaaatcaagggagtcaagtgaggttagatttccaatatttgatggaattttccctgcgaagttgtttcttgata 14047009  T
Q  212 agttcaatgagaccaattg 230  Q
    | |||||||||||||||||    
T  14047010 aattcaatgagaccaattg 14047028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 13 - 230
Target Start/End: Original strand, 14109882 - 14110100
Alignment:
Q  13 gaaactttgtagctgtgtacacgttggaatctctccatataattgattatgtgacacatctaacacactaagtcgatcaatttgagaaagactagaagga 112  Q
    |||||||||||| ||||||| ||||||||| |||||| |||||||||||||||||| |||||||||||| || || || || ||||| ||||| | ||||    
T  14109882 gaaactttgtagttgtgtactcgttggaatttctccagataattgattatgtgacaaatctaacacacttagccggtctatgtgagagagactgggagga 14109981  T
Q  113 att-aaccacgcaacttgttttgtgataaatcaagaaagtcaagtgatgttagctttccaatatttgaaggaatttttcctgtgaagttgtttcttgata 211  Q
    ||| |||||  ||| || ||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||    
T  14109982 attgaaccaaacaagttatttcgtgacaaatcaagaaagtcaagtgatgttagatttccaatatttgaaggaattttccctgtcaagttgtttcttgata 14110081  T
Q  212 agttcaatgagaccaattg 230  Q
    ||||||| |||||||||||    
T  14110082 agttcaacgagaccaattg 14110100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 13 - 230
Target Start/End: Complemental strand, 13473647 - 13473429
Alignment:
Q  13 gaaactttgtagctgtgtacacgttggaatctctccatataattgattatgtgacacatctaacacactaagtcgatcaatttgagaaagactagaagga 112  Q
    |||||||||||| ||||| | |  ||||||||||||| |||||||||||||||||| ||||||||||| ||| ||||| ||||| |||||||||||||||    
T  13473647 gaaactttgtagttgtgtgctcaatggaatctctccagataattgattatgtgacaaatctaacacaccaagccgatctatttgggaaagactagaagga 13473548  T
Q  113 att-aaccacgcaacttgttttgtgataaatcaagaaagtcaagtgatgttagctttccaatatttgaaggaatttttcctgtgaagttgtttcttgata 211  Q
    ||| ||||  ||||||| ||| |||  || |||||||||||||||||| |||| ||||||||||||||||||||||| ||||| || |||||||||||||    
T  13473547 attgaacctagcaacttatttcgtgccaagtcaagaaagtcaagtgatcttagttttccaatatttgaaggaattttccctgtaaaattgtttcttgata 13473448  T
Q  212 agttcaatgagaccaattg 230  Q
    ||||||| |||||||||||    
T  13473447 agttcaaagagaccaattg 13473429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 13 - 230
Target Start/End: Complemental strand, 13863489 - 13863271
Alignment:
Q  13 gaaactttgtagctgtgtacacgttggaatctctccatataattgattatgtgacacatctaacacactaagtcgatcaatttgagaaagactagaagga 112  Q
    ||||| |||||| ||||||| | ||||||| || ||| |||||||||||||||||||||||||| ||| ||| ||||| ||||| |||||||||||||||    
T  13863489 gaaaccttgtagttgtgtactctttggaatttcaccagataattgattatgtgacacatctaacccaccaagccgatctatttgggaaagactagaagga 13863390  T
Q  113 att-aaccacgcaacttgttttgtgataaatcaagaaagtcaagtgatgttagctttccaatatttgaaggaatttttcctgtgaagttgtttcttgata 211  Q
    ||| |||||  ||||||||||||||| ||||||||||| ||||||||||||| | |||| ||||||||||||||||| ||||| ||||||||||||||||    
T  13863389 attgaaccaaacaacttgttttgtgacaaatcaagaaattcaagtgatgttaaccttccgatatttgaaggaattttccctgtcaagttgtttcttgata 13863290  T
Q  212 agttcaatgagaccaattg 230  Q
    | || | ||||||||||||    
T  13863289 aatttagtgagaccaattg 13863271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 13 - 230
Target Start/End: Complemental strand, 13893663 - 13893445
Alignment:
Q  13 gaaactttgtagctgtgtacacgttggaatctctccatataattgattatgtgacacatctaacacactaagtcgatcaatttgagaaagactagaagga 112  Q
    |||||||||||| ||||||| ||||||||| |||||| | |||||||||||||||| ||||||||||| ||  ||||| ||||  |||||||||||||||    
T  13893663 gaaactttgtagttgtgtactcgttggaatttctccagacaattgattatgtgacagatctaacacaccaatccgatctattttggaaagactagaagga 13893564  T
Q  113 att-aaccacgcaacttgttttgtgataaatcaagaaagtcaagtgatgttagctttccaatatttgaaggaatttttcctgtgaagttgtttcttgata 211  Q
    ||| ||||| ||||||| |||||||| |||||||||||||||||||||||||  ||||| ||||||||||||||||| ||||| ||||||||||||||||    
T  13893563 attgaaccaagcaacttattttgtgacaaatcaagaaagtcaagtgatgttaattttccgatatttgaaggaattttccctgtcaagttgtttcttgata 13893464  T
Q  212 agttcaatgagaccaattg 230  Q
    | || | |||||| |||||    
T  13893463 aatttagtgagactaattg 13893445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 14 - 230
Target Start/End: Original strand, 14084077 - 14084294
Alignment:
Q  14 aaactttgtagctgtgtacacgttggaatctctccatataattgattatgtgacacatctaacacactaagtcgatcaatttgagaaagactagaaggaa 113  Q
    |||||||| || ||||||| | ||||||| |||||  ||||||||||||| |||| ||||||||||||||| || || |||||||| ||||||  |||||    
T  14084077 aaactttgaagttgtgtactctttggaatttctcccgataattgattatgcgacaaatctaacacactaagccggtctatttgagagagactatgaggaa 14084176  T
Q  114 tt-aaccacgcaacttgttttgtgataaatcaagaaagtcaagtgatgttagctttccaatatttgaaggaatttttcctgtgaagttgtttcttgataa 212  Q
    || ||||| ||||||| ||| |||| |||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  14084177 ttgaaccaagcaacttatttcgtgaaaaatcaagaaagtcaagtgatgctagatttccaatatttgaaggaattttccctgtgaagttgtttcttgataa 14084276  T
Q  213 gttcaatgagaccaattg 230  Q
     ||||| |||||||||||    
T  14084277 attcaaagagaccaattg 14084294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 13 - 230
Target Start/End: Original strand, 14014556 - 14014774
Alignment:
Q  13 gaaactttgtagctgtgtacacgttggaatctctccatataattgattatgtgacacatctaacacactaagtcgatcaatttgagaaagactagaagga 112  Q
    |||||||||||| ||||||| | ||||||| |||||  |||||||||||||||||| ||||||||||| ||| || |  ||||| ||||||||||| |||    
T  14014556 gaaactttgtagttgtgtactccttggaatttctcccgataattgattatgtgacaaatctaacacaccaagccggtgtatttgtgaaagactagatgga 14014655  T
Q  113 att-aaccacgcaacttgttttgtgataaatcaagaaagtcaagtgatgttagctttccaatatttgaaggaatttttcctgtgaagttgtttcttgata 211  Q
    ||| ||| | |||| || |||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||    
T  14014656 attgaacaaagcaaattatttcttgagaaatcaagaaagtcaagtgatgttagctttccaatatttgaaggaattttccccgtcaagttgtttcttgata 14014755  T
Q  212 agttcaatgagaccaattg 230  Q
    ||||||| |||||||||||    
T  14014756 agttcaacgagaccaattg 14014774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 13911268 - 13911457
Alignment:
Q  13 gaaactttgtagctgtgtacacgttggaatctctccatataattgattatgtgacacatctaacacactaagtcgatcaatttgagaaagactagaagga 112  Q
    |||||||||||| |||||||  ||||||||||||||| |||||||||||||||||| ||||||||||||||| || || || ||||| ||||||| ||||    
T  13911268 gaaactttgtagttgtgtacttgttggaatctctccagataattgattatgtgacaaatctaacacactaagacggtctatgtgagagagactaggagga 13911367  T
Q  113 att-aaccacgcaacttgttttgtgataaatcaagaaagtcaagtgatgttagctttccaatatttgaaggaatttttcctgtgaagttg 201  Q
    ||| ||||| |||| || ||| |||| ||||||||||||||||||||||||| |||||| | ||||||||||||||| ||||| ||||||    
T  13911368 attgaaccaagcaagttatttcgtgacaaatcaagaaagtcaagtgatgttaactttccgaaatttgaaggaattttccctgtaaagttg 13911457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 228
Target Start/End: Complemental strand, 37164936 - 37164850
Alignment:
Q  142 tcaagaaagtcaagtgatgttagctttccaatatttgaaggaatttttcctgtgaagttgtttcttgataagttcaatgagaccaat 228  Q
    |||||||| ||||||||||||| |||||||||  |||||| |||||  ||||| || ||||| |||||||| |||||||| ||||||    
T  37164936 tcaagaaattcaagtgatgttaactttccaatcattgaagtaatttcccctgtcaaattgttgcttgataaattcaatgacaccaat 37164850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 37132482 - 37132397
Alignment:
Q  142 tcaagaaagtcaagtgatgttagctttccaatatttgaaggaatttttcctgtgaagttgtttcttgataagttcaatgagaccaa 227  Q
    |||||| | ||||||||||||| | ||||||| || |||| ||||| |||||| || ||||| |||||||| |||||||| |||||    
T  37132482 tcaagagaatcaagtgatgttaaccttccaatcttcgaagaaatttctcctgtcaacttgttgcttgataaattcaatgacaccaa 37132397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 228
Target Start/End: Original strand, 35142934 - 35143020
Alignment:
Q  142 tcaagaaagtcaagtgatgttagctttccaatatttgaaggaatttttcctgtgaagttgtttcttgataagttcaatgagaccaat 228  Q
    |||||||| ||||||||||||| | ||||||| | ||||| |||||  || || || ||||| |||||||| |||||||| ||||||    
T  35142934 tcaagaaattcaagtgatgttaaccttccaatctctgaagtaatttccccagtcaaattgttgcttgataaattcaatgacaccaat 35143020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 3022646 - 3022695
Alignment:
Q  142 tcaagaaagtcaagtgatgttagctttccaatatttgaaggaatttttcc 191  Q
    |||||||| ||||||||||||| | ||||||| ||||||| |||||||||    
T  3022646 tcaagaaattcaagtgatgttaaccttccaatctttgaagtaatttttcc 3022695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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