View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9326-LTR4-TNT-insertion-10 (Length: 295)
Name: F9326-LTR4-TNT-insertion-10
Description: F9326-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9326-LTR4-TNT-insertion-10 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 8 - 237
Target Start/End: Original strand, 35372682 - 35372911
Alignment:
| Q |
8 |
taaacctcttttaaacaacaaatatttgataaactaattgataatatgtgagtttagagctgatagtggccggataaacaaagatggcaagagaagcaag |
107 |
Q |
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| T |
35372682 |
taaacctcttttaaacaacaaatatttgataaactaattgataatatgtgagtttagagctgatagtggccggataaacaaagatggcaagagaagcaag |
35372781 |
T |
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| Q |
108 |
tagaacaatggctacaactgtaatcttgacctttcttctataatcttaatctttcacacaatatacacaaaagtgaagaagttggtgttcaagcctcatt |
207 |
Q |
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| T |
35372782 |
tagaacaatggctacaactgcaatcttgacctttcttctataatcttaatctttcacacaatatacacaaaagtgaagaagttggtgttcaagcctcatt |
35372881 |
T |
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| Q |
208 |
catgacattcgacctaacaattctgagaca |
237 |
Q |
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| T |
35372882 |
catgacattcgacctaacaattctgagaca |
35372911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 35332430 - 35332496
Alignment:
| Q |
94 |
gcaagagaagcaagtagaacaatggctacaactgtaatcttgacctttcttctataatcttaatctt |
160 |
Q |
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| T |
35332430 |
gcaagagaagcaagtacaacaatagcaacaactgcaatcttggcctttcttctgtaatcttcatctt |
35332496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 35369435 - 35369477
Alignment:
| Q |
79 |
ggataaacaaagatggcaagagaagcaagtagaacaatggctaca |
123 |
Q |
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| T |
35369435 |
ggataaacaaagacgg--agagaagcaagtagaacaatggctaca |
35369477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 35357410 - 35357470
Alignment:
| Q |
100 |
gaagcaagtagaacaatggctacaactgtaatcttgacctttcttctataatcttaatctt |
160 |
Q |
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| T |
35357410 |
gaagcaattagaacattggcaacaactggaatctttgccttccttctataatcttcatctt |
35357470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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