View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9326-LTR4-TNT-insertion-12 (Length: 268)

Name: F9326-LTR4-TNT-insertion-12
Description: F9326-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9326-LTR4-TNT-insertion-12
F9326-LTR4-TNT-insertion-12
[»] scaffold2156 (1 HSPs)
scaffold2156 (5-260)||(478-733)
[»] scaffold0640 (1 HSPs)
scaffold0640 (5-260)||(4597-4852)
[»] chr3 (28 HSPs)
chr3 (21-210)||(19436093-19436282)
chr3 (18-210)||(18102652-18102844)
chr3 (21-202)||(17940957-17941138)
chr3 (5-210)||(18115141-18115346)
chr3 (5-210)||(19398920-19399125)
chr3 (5-202)||(19333173-19333370)
chr3 (18-207)||(19413388-19413577)
chr3 (14-207)||(18164350-18164540)
chr3 (5-210)||(19460708-19460913)
chr3 (5-207)||(19350606-19350808)
chr3 (5-210)||(19374870-19375075)
chr3 (5-210)||(19354040-19354241)
chr3 (18-202)||(24494024-24494208)
chr3 (21-202)||(16676396-16676580)
chr3 (18-198)||(19392347-19392527)
chr3 (71-210)||(18015339-18015478)
chr3 (42-202)||(18146064-18146224)
chr3 (18-207)||(18143493-18143679)
chr3 (42-210)||(19380115-19380283)
chr3 (21-198)||(25462266-25462440)
chr3 (32-207)||(14896991-14897163)
chr3 (42-210)||(18107662-18107830)
chr3 (72-210)||(19419235-19419373)
chr3 (18-171)||(18022067-18022220)
chr3 (72-210)||(17728299-17728437)
chr3 (72-210)||(19029528-19029666)
chr3 (5-99)||(18015246-18015340)
chr3 (159-207)||(19423940-19423988)
[»] chr8 (1 HSPs)
chr8 (18-210)||(8458695-8458887)
[»] chr6 (1 HSPs)
chr6 (65-210)||(13667499-13667644)
[»] chr4 (1 HSPs)
chr4 (30-202)||(15531585-15531757)


Alignment Details
Target: scaffold2156 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: scaffold2156
Description:

Target: scaffold2156; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 5 - 260
Target Start/End: Complemental strand, 733 - 478
Alignment:
Q  5 acacgaatatcatttcttttgcttctacttttatatgtaaccacatttcacaaaatcacttgcagcaatcacactgtggttagatgcaatgagaaagatc 104  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  733 acacaaatatcatttctttttcttctacttttatatgtaaccacatttcacaaaatcacttgcaccaatcacactgtggttagatgcaatgagaaagatc 634  T
Q  105 gagagacattgttaaccttcaaacaggacatcaatgatagtattggtgggatatcaacgtggtcaaccgaaaaagattgttgtgcatgggaaggagtcta 204  Q
    | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  633 gtgagacattgttaaccttcaaacaggacatcaatgatagtcttggtgggatatcaacgtggtcaaccgaaaaagattgttgtgcatgggaaggagtcta 534  T
Q  205 ctgtgatagtatcgccaacaatgtaacaaaacttgatatgcagttcaaacaattgg 260  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||    
T  533 ctgtgatagtatcaccaacaaagtaacaaaacttgatatgcagttcaaataattgg 478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0640 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 5 - 260
Target Start/End: Original strand, 4597 - 4852
Alignment:
Q  5 acacgaatatcatttcttttgcttctacttttatatgtaaccacatttcacaaaatcacttgcagcaatcacactgtggttagatgcaatgagaaagatc 104  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4597 acacaaatatcatttcttttacttctacttttatatgtaaccacatttcacaaaatcacttgcaccaatcacactgtggttagatgcaatgagaaagatc 4696  T
Q  105 gagagacattgttaaccttcaaacaggacatcaatgatagtattggtgggatatcaacgtggtcaaccgaaaaagattgttgtgcatgggaaggagtcta 204  Q
    | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4697 gtgagacattgttaaccttcaaacaggacatcaatgatagtcttggtgggatatcaacgtggtcaaccgaaaaagattgttgtgcatgggaaggagtcta 4796  T
Q  205 ctgtgatagtatcgccaacaatgtaacaaaacttgatatgcagttcaaacaattgg 260  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||    
T  4797 ctgtgatagtatcaccaacaaagtaacaaaacttgatatgcagttcaaaaaattgg 4852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 21 - 210
Target Start/End: Original strand, 19436093 - 19436282
Alignment:
Q  21 ttttgcttctacttttatatgtaaccacatttcacaaaatcacttgcagcaatcacactgtggttagatgcaatgagaaagatcgagagacattgttaac 120  Q
    |||||||||||||||||| | |||| ||||| ||||||| ||  |||||||||||||| |||||| |||||||||||||||||| ||||||| |||||||    
T  19436093 ttttgcttctacttttatctataacaacattccacaaaaccatgtgcagcaatcacacagtggttcgatgcaatgagaaagatcaagagacactgttaac 19436192  T
Q  121 cttcaaacaggacatcaatgatagtattggtgggatatcaacgtggtcaaccgaaaaagattgttgtgcatgggaaggagtctactgtga 210  Q
    ||||||||| | ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||  ||| ||| |||||||    
T  19436193 cttcaaacaaggcatcaatgatagttttggtcggatatcaacgtggtcaaccgaaaaagattgttgtgcttggagaggtgtccactgtga 19436282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 18102652 - 18102844
Alignment:
Q  18 ttcttttgcttctacttttatatgtaaccacatttcacaaaatcacttgcagcaatcacactgtggttagatgcaatgagaaagatcgagagacattgtt 117  Q
    ||||||| |||||||||||||  ||||||||||| ||||||| ||  |||| ||||||||| |||||| ||||||||||||||||||  |||||| ||||    
T  18102652 ttcttttacttctacttttatcggtaaccacattccacaaaagcatgtgcaccaatcacacagtggttcgatgcaatgagaaagatcatgagacactgtt 18102751  T
Q  118 aaccttcaaacaggacatcaatgatagtattggtgggatatcaacgtggtcaaccgaaaaagattgttgtgcatgggaaggagtctactgtga 210  Q
    |||||||||||| | ||||||||||||| ||||| |||| ||||||||||||||| ||||||||| |||||| |||||||||||| |||||||    
T  18102752 aaccttcaaacatggcatcaatgatagttttggtcggatttcaacgtggtcaaccaaaaaagatttttgtgcttgggaaggagtccactgtga 18102844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 21 - 202
Target Start/End: Original strand, 17940957 - 17941138
Alignment:
Q  21 ttttgcttctacttttatatgtaaccacatttcacaaaatcacttgcagcaatcacactgtggttagatgcaatgagaaagatcgagagacattgttaac 120  Q
    |||||||||||||||||| | |||||||||| ||||||| ||  |||||||||||||| || |||  |||||||||||||||||| |||||| | |||||    
T  17940957 ttttgcttctacttttatttataaccacattccacaaaaccatgtgcagcaatcacacagttgttcaatgcaatgagaaagatcgcgagacactattaac 17941056  T
Q  121 cttcaaacaggacatcaatgatagtattggtgggatatcaacgtggtcaaccgaaaaagattgttgtgcatgggaaggagtc 202  Q
    ||||||||| | ||||||||||||| ||||| | |||||||||||||||||| |||| ||||||||||| ||||||||||||    
T  17941057 cttcaaacatggcatcaatgatagtcttggtcgaatatcaacgtggtcaaccaaaaatgattgttgtgcttgggaaggagtc 17941138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 5 - 210
Target Start/End: Original strand, 18115141 - 18115346
Alignment:
Q  5 acacgaatatcatttcttttgcttctacttttatatgtaaccacatttcacaaaatcacttgcagcaatcacactgtggttagatgcaatgagaaagatc 104  Q
    |||| ||| ||| ||||||||||| ||||||||| | ||||||||||  |||||| | | |||||||||||||| |||||| ||||||||||||||||||    
T  18115141 acacaaatttcacttcttttgcttttacttttatctataaccacattctacaaaagctcgtgcagcaatcacacagtggttggatgcaatgagaaagatc 18115240  T
Q  105 gagagacattgttaaccttcaaacaggacatcaatgatagtattggtgggatatcaacgtggtcaaccgaaaaagattgttgtgcatgggaaggagtcta 204  Q
    |||||||| | |||||||||||| | |  |||||||| | | ||||| |||||| ||||||||||||||||| |||||||||||| |||||||||||| |    
T  18115241 gagagacactcttaaccttcaaaaaaggaatcaatgacactcttggtcggatattaacgtggtcaaccgaaatagattgttgtgcttgggaaggagtcca 18115340  T
Q  205 ctgtga 210  Q
    ||||||    
T  18115341 ctgtga 18115346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 5 - 210
Target Start/End: Original strand, 19398920 - 19399125
Alignment:
Q  5 acacgaatatcatttcttttgcttctacttttatatgtaaccacatttcacaaaatcacttgcagcaatcacactgtggttagatgcaatgagaaagatc 104  Q
    |||| ||| ||| ||||||||||| ||||||||| | |||| | ||| ||||||| ||  || | ||||||||| || ||| ||||||||||||||||||    
T  19398920 acacaaatttcacttcttttgcttatacttttatctataactatattccacaaaaccatgtgtaccaatcacacagttgttcgatgcaatgagaaagatc 19399019  T
Q  105 gagagacattgttaaccttcaaacaggacatcaatgatagtattggtgggatatcaacgtggtcaaccgaaaaagattgttgtgcatgggaaggagtcta 204  Q
    |||||||| |||||| ||||||||| | ||||||||||||| ||||| |||||||||||||||||||| ||||||||||||| || ||||||||||||||    
T  19399020 gagagacactgttaaacttcaaacaaggcatcaatgatagtcttggtcggatatcaacgtggtcaaccaaaaaagattgttgcgcttgggaaggagtcta 19399119  T
Q  205 ctgtga 210  Q
     |||||    
T  19399120 ttgtga 19399125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 5 - 202
Target Start/End: Original strand, 19333173 - 19333370
Alignment:
Q  5 acacgaatatcatttcttttgcttctacttttatatgtaaccacatttcacaaaatcacttgcagcaatcacactgtggttagatgcaatgagaaagatc 104  Q
    |||| ||| ||| |||||||||||  |||||||| | |||| ||||| ||||||| ||  || ||||||||||| || ||| | ||||||||||||||||    
T  19333173 acacaaatttcacttcttttgcttacacttttatctataactacattccacaaaaccatgtgtagcaatcacacagttgttcgctgcaatgagaaagatc 19333272  T
Q  105 gagagacattgttaaccttcaaacaggacatcaatgatagtattggtgggatatcaacgtggtcaaccgaaaaagattgttgtgcatgggaaggagtc 202  Q
    |||||||||||||||| |||| ||||| |||| |||||||| ||||| ||||||||||||||||||| |||||||||||||| | |||||||||||||    
T  19333273 gagagacattgttaacgttcagacagggcatccatgatagtcttggtcggatatcaacgtggtcaactgaaaaagattgttgcgtatgggaaggagtc 19333370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 19413388 - 19413577
Alignment:
Q  18 ttcttttgcttctacttttatatgtaaccacatttcacaaaatcacttgcagcaatcacactgtggttagatgcaatgagaaagatcgagagacattgtt 117  Q
    |||||||||||||||||||||   |||||| ||| ||||||| ||  |||| ||||| ||| || ||| ||||||||||||| |||||||||||| ||||    
T  19413388 ttcttttgcttctacttttatcaataaccatattccacaaaaccatgtgcaacaatcccacagttgttcgatgcaatgagaatgatcgagagacactgtt 19413487  T
Q  118 aaccttcaaacaggacatcaatgatagtattggtgggatatcaacgtggtcaaccgaaaaagattgttgtgcatgggaaggagtctactg 207  Q
    ||||||||| ||||  |||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||  |||||||||||| ||||    
T  19413488 aaccttcaaccagggtatcactgatagtcttggttggatatcaacgtggtcaaccgaaaaagattgttgtggttgggaaggagtccactg 19413577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 14 - 207
Target Start/End: Original strand, 18164350 - 18164540
Alignment:
Q  14 tcatttcttttgcttctacttttatatgtaaccacatttcacaaaatcacttgcagcaatcacactgtggttagatgcaatgagaaagatcgagagacat 113  Q
    |||||| |||||||||| |||||||||||||||  |||  |||||| ||  ||||||||||||||      | |||||||||| ||||||||||||||||    
T  18164350 tcatttattttgcttcttcttttatatgtaacccgattcgacaaaagcatgtgcagcaatcacaccac---tcgatgcaatgaaaaagatcgagagacat 18164446  T
Q  114 tgttaaccttcaaacaggacatcaatgatagtattggtgggatatcaacgtggtcaaccgaaaaagattgttgtgcatgggaaggagtctactg 207  Q
    ||||||| |||| ||| | ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  18164447 tgttaacgttcagacacggcatcaatgatagttttggtcggatatcaacgtggtcaaccgaaaaagattgttgtgtatgggaaggagtccactg 18164540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 5 - 210
Target Start/End: Original strand, 19460708 - 19460913
Alignment:
Q  5 acacgaatatcatttcttttgcttctacttttatatgtaaccacatttcacaaaatcacttgcagcaatcacactgtggttagatgcaatgagaaagatc 104  Q
    |||| ||| ||| ||||||||||| ||||||||| | ||||||||||  |||||| |   |||||||||||||| |||||| ||||||||||||||||||    
T  19460708 acacaaatttcacttcttttgcttttacttttatctataaccacattctacaaaagcttgtgcagcaatcacacagtggttggatgcaatgagaaagatc 19460807  T
Q  105 gagagacattgttaaccttcaaacaggacatcaatgatagtattggtgggatatcaacgtggtcaaccgaaaaagattgttgtgcatgggaaggagtcta 204  Q
    |||||||| | |||||||||||| | |  |||||||| | | ||||| |||||| ||| ||||||||||||| |||||||||||| |||||||||||| |    
T  19460808 gagagacactcttaaccttcaaataaggaatcaatgacactcttggtcggatattaacatggtcaaccgaaatagattgttgtgcttgggaaggagtcca 19460907  T
Q  205 ctgtga 210  Q
    ||||||    
T  19460908 ctgtga 19460913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 5 - 207
Target Start/End: Original strand, 19350606 - 19350808
Alignment:
Q  5 acacgaatatcatttcttttgcttctacttttatatgtaaccacatttcacaaaatcacttgcagcaatcacactgtggttagatgcaatgagaaagatc 104  Q
    |||| ||| ||| ||||||||||| ||||||||| | |||||||||| ||||||| ||  |||| |||||||||  |||||  ||||||||||||||||     
T  19350606 acacaaatctcacttcttttgcttatacttttatctataaccacattccacaaaaccatgtgcaccaatcacacattggttcaatgcaatgagaaagata 19350705  T
Q  105 gagagacattgttaaccttcaaacaggacatcaatgatagtattggtgggatatcaacgtggtcaaccgaaaaagattgttgtgcatgggaaggagtcta 204  Q
    ||||||||||||||||||| ||||| | ||||||||||| | ||||| |||||||||| |||||||  ||||||||| |||||| |||||| |||||| |    
T  19350706 gagagacattgttaacctttaaacatggcatcaatgataattttggttggatatcaacatggtcaattgaaaaagatagttgtgtatgggacggagtcca 19350805  T
Q  205 ctg 207  Q
    |||    
T  19350806 ctg 19350808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 5 - 210
Target Start/End: Original strand, 19374870 - 19375075
Alignment:
Q  5 acacgaatatcatttcttttgcttctacttttatatgtaaccacatttcacaaaatcacttgcagcaatcacactgtggttagatgcaatgagaaagatc 104  Q
    |||| ||| ||| ||||||||||| ||||||||| | |||||||||| |||||||     ||||||||||||||  ||||| ||||||||||||||||||    
T  19374870 acacaaatttcacttcttttgcttatacttttatctataaccacattccacaaaacggtgtgcagcaatcacacattggttcgatgcaatgagaaagatc 19374969  T
Q  105 gagagacattgttaaccttcaaacaggacatcaatgatagtattggtgggatatcaacgtggtcaaccgaaaaagattgttgtgcatgggaaggagtcta 204  Q
    |||||||| | |||||||||||| |||  |||||||||||| |||||  ||| ||| ||||||| |  ||||||||||||||| | ||||||||||||||    
T  19374970 gagagacactattaaccttcaaagagggaatcaatgatagttttggtatgatttcatcgtggtcgattgaaaaagattgttgttcttgggaaggagtcta 19375069  T
Q  205 ctgtga 210  Q
    ||||||    
T  19375070 ctgtga 19375075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 5 - 210
Target Start/End: Original strand, 19354040 - 19354241
Alignment:
Q  5 acacgaatatcatttcttttgcttctacttttatatgtaaccacatttcacaaaatcacttgcagcaatcacactgtggttagatgcaatgagaaagatc 104  Q
    |||| ||| ||| |||||||| ||||| |||||| | |||||||||| ||||||      |||| |||||||||| ||||| ||||||||||||||||||    
T  19354040 acacaaatttcacttcttttgtttctatttttatctataaccacattccacaaatg----tgcaacaatcacactatggttcgatgcaatgagaaagatc 19354135  T
Q  105 gagagacattgttaaccttcaaacaggacatcaatgatagtattggtgggatatcaacgtggtcaaccgaaaaagattgttgtgcatgggaaggagtcta 204  Q
    ||||||||||||||||||| |||||||  |||||||||||| |||||  ||| |||| |||||| || ||||||||||||||| | ||||||| |||| |    
T  19354136 gagagacattgttaacctttaaacagggaatcaatgatagtcttggtatgatttcaatgtggtcgactgaaaaagattgttgttcttgggaagaagtcca 19354235  T
Q  205 ctgtga 210  Q
    ||||||    
T  19354236 ctgtga 19354241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 24494208 - 24494024
Alignment:
Q  18 ttcttttgcttctacttttatatgtaaccacatttcacaaaatcacttgcagcaatcacactgtggttagatgcaatgagaaagatcgagagacattgtt 117  Q
    |||||||||||||||||||||   |||||||||| ||||| | ||  |||||| |||||||  |||||  ||||||||||||||||||||||||| ||||    
T  24494208 ttcttttgcttctacttttatccataaccacattccacaagagcatgtgcagccatcacacattggtttcatgcaatgagaaagatcgagagacactgtt 24494109  T
Q  118 aaccttcaaacaggacatcaatgatagtattggtgggatatcaacgtggtcaaccgaaaaagattgttgtgcatgggaaggagtc 202  Q
    | ||||||||||   |||| |||||||| |||||  ||| ||||| |||||||||| ||||||||||||||||||| ||||||||    
T  24494108 agccttcaaacaaagcatcgatgatagtcttggtctgatttcaacatggtcaaccgtaaaagattgttgtgcatggaaaggagtc 24494024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 21 - 202
Target Start/End: Original strand, 16676396 - 16676580
Alignment:
Q  21 ttttgcttctacttttatatgtaaccacatttcacaaaatcacttgcagcaat---cacactgtggttagatgcaatgagaaagatcgagagacattgtt 117  Q
    |||||||||||||||||| |||||||||||| ||||||| ||  |  ||||||   ||||   ||||||||||||||||||| |||| | ||||||||||    
T  16676396 ttttgcttctacttttatttgtaaccacattccacaaaagcatatctagcaatgatcacagattggttagatgcaatgagaaggatcaaaagacattgtt 16676495  T
Q  118 aaccttcaaacaggacatcaatgatagtattggtgggatatcaacgtggtcaaccgaaaaagattgttgtgcatgggaaggagtc 202  Q
    |||||||||||| | |||||||| |||| || || |||||||||| |||||||| |||||||| ||||||| |||||||||||||    
T  16676496 aaccttcaaacaaggcatcaatggtagttttagtcggatatcaacatggtcaactgaaaaagactgttgtgtatgggaaggagtc 16676580  T

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Target: chr3; HSP #15
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 19392347 - 19392527
Alignment:
Q  18 ttcttttgcttctacttttatatgtaaccacatttcacaaaatcacttgcagcaatcacactgtggttagatgcaatgagaaagatcgagagacattgtt 117  Q
    ||||||||| ||||||||||| | ||| ||||||  |||||| ||  |||| ||||||||| ||||||  ||| ||||||||||||||||||||| ||||    
T  19392347 ttcttttgcatctacttttatttataatcacattatacaaaagcatgtgcatcaatcacaccgtggttcaatgtaatgagaaagatcgagagacactgtt 19392446  T
Q  118 aaccttcaaacaggacatcaatgatagtattggtgggatatcaacgtggtcaaccgaaaaagattgttgtgcatgggaagg 198  Q
    |||||||||||| | ||||||| ||| | ||||| ||||||||| |||| ||||  |||||||||||||||| ||||||||    
T  19392447 aaccttcaaacaaggcatcaattataatcttggtcggatatcaatgtggacaacaaaaaaagattgttgtgcttgggaagg 19392527  T

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Target: chr3; HSP #16
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 71 - 210
Target Start/End: Original strand, 18015339 - 18015478
Alignment:
Q  71 aatcacactgtggttagatgcaatgagaaagatcgagagacattgttaaccttcaaacaggacatcaatgatagtattggtgggatatcaacgtggtcaa 170  Q
    ||||||||  ||||| |||||||||||||||||||||||||| |||||||||||||||| |  |||||||||||| |||||  ||| ||||||||||| |    
T  18015339 aatcacacattggttcgatgcaatgagaaagatcgagagacactgttaaccttcaaacaaggaatcaatgatagttttggtatgatttcaacgtggtcga 18015438  T
Q  171 ccgaaaaagattgttgtgcatgggaaggagtctactgtga 210  Q
    | ||||||||||||||| | |||||||||||| |||||||    
T  18015439 cagaaaaagattgttgttcttgggaaggagtccactgtga 18015478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 42 - 202
Target Start/End: Original strand, 18146064 - 18146224
Alignment:
Q  42 taaccacatttcacaaaatcacttgcagcaatcacactgtggttagatgcaatgagaaagatcgagagacattgttaaccttcaaacaggacatcaatga 141  Q
    |||||||||| ||||||| ||  ||||||||||||||  |  || ||||||||||||||||||  |||||| ||| |||||||||| ||| |||||||||    
T  18146064 taaccacattccacaaaagcatgtgcagcaatcacacaatttttcgatgcaatgagaaagatcatgagacactgtcaaccttcaaaaagggcatcaatga 18146163  T
Q  142 tagtattggtgggatatcaacgtggtcaaccgaaaaagattgttgtgcatgggaaggagtc 202  Q
    |||| ||||| |||| |||||||||||||| ||||||||||||||||  ||| ||||||||    
T  18146164 tagttttggtcggatttcaacgtggtcaactgaaaaagattgttgtgtttggaaaggagtc 18146224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 18143493 - 18143679
Alignment:
Q  18 ttcttttgcttctacttttatatgtaaccacatttcacaaaatcacttgcagcaatcacactgtggttagatgcaatgagaaagatcgagagacattgtt 117  Q
    ||||||||||| ||||| |||   |||||||||| ||||||| ||  |||||||||||||| ||   | ||||||| ||||||||| |||||||||||||    
T  18143493 ttcttttgcttatacttctatcaataaccacattccacaaaaccatgtgcagcaatcacacagt---tcgatgcaacgagaaagattgagagacattgtt 18143589  T
Q  118 aaccttcaaacaggacatcaatgatagtattggtgggatatcaacgtggtcaaccgaaaaagattgttgtgcatgggaaggagtctactg 207  Q
    || |||||||  || ||||||||||||| |||||   |||||||| |||||||| |||||| ||||||| | ||||||||||||||||||    
T  18143590 aagcttcaaatggggcatcaatgatagtcttggtcaaatatcaacatggtcaactgaaaaaaattgttgcgtatgggaaggagtctactg 18143679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 42 - 210
Target Start/End: Original strand, 19380115 - 19380283
Alignment:
Q  42 taaccacatttcacaaaatcacttgcagcaatcacactgtggttagatgcaatgagaaagatcgagagacattgttaaccttcaaacaggacatcaatga 141  Q
    |||||||||| ||||||  ||  |||||||||||||| |||||| |||| ||||||||||||| ||||| | | |||||||| |||||||  ||||||||    
T  19380115 taaccacattccacaaatgcatatgcagcaatcacacagtggttcgatgtaatgagaaagatctagagatactcttaacctttaaacagggaatcaatga 19380214  T
Q  142 tagtattggtgggatatcaacgtggtcaaccgaaaaagattgttgtgcatgggaaggagtctactgtga 210  Q
    |||| |||||  ||| |||||||||||||| ||||| ||||||||||| ||| |||| ||| |||||||    
T  19380215 tagtcttggtacgatttcaacgtggtcaactgaaaatgattgttgtgcttggaaaggtgtccactgtga 19380283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 198
Target Start/End: Original strand, 25462266 - 25462440
Alignment:
Q  21 ttttgcttctacttttatatgtaaccacatttcacaaaatcacttgcagcaatcacactgtggttagatgcaatgagaaagatcgagagacattgttaac 120  Q
    |||| ||||||||||| |   ||||||| || ||||||| ||  |||| |||||||||||||||| |||||||||||||||| || |||||| |||||||    
T  25462266 ttttacttctacttttttcaataaccacgttccacaaaagcatgtgcaacaatcacactgtggttcgatgcaatgagaaagaccgtgagacactgttaac 25462365  T
Q  121 cttcaaacaggacatcaatgatagtattggtgggatatcaacgtggtcaaccgaaaaagattgttgtgcatgggaagg 198  Q
    ||||||||| | ||||||||| ||| |||||  ||| |||| |||||   | ||||||||||||||||||||||||||    
T  25462366 cttcaaacatggcatcaatgacagtcttggtatgatttcaatgtggt---ctgaaaaagattgttgtgcatgggaagg 25462440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 32 - 207
Target Start/End: Complemental strand, 14897163 - 14896991
Alignment:
Q  32 cttttatatgtaaccacatttcacaaaatcacttgcagcaatcacactgtggttagatgcaatgagaaagatcgagagacattgttaaccttcaaacagg 131  Q
    ||||||| | |||| ||||| ||||||| ||  |||||||| ||||| ||||||  |||||||||||||||||| |||| |||||||| ||||||||| |    
T  14897163 cttttatctataactacattccacaaaaccatgtgcagcaaccacaccgtggttcaatgcaatgagaaagatcgtgagatattgttaaacttcaaacaag 14897064  T
Q  132 acatcaatgatagtattggtgggatatcaacgtggtcaaccgaaaaagattgttgtgcatgggaaggagtctactg 207  Q
     |||| |||||| | ||||| |||||||||  ||||   ||||||||||||||||||| |||||||||||| ||||    
T  14897063 gcatccatgatacttttggtcggatatcaatatggt---ccgaaaaagattgttgtgcttgggaaggagtccactg 14896991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 42 - 210
Target Start/End: Original strand, 18107662 - 18107830
Alignment:
Q  42 taaccacatttcacaaaatcacttgcagcaatcacactgtggttagatgcaatgagaaagatcgagagacattgttaaccttcaaacaggacatcaatga 141  Q
    |||||||||| ||||||  ||  |||||||||||||| |||||| |||||||||||||||||| ||| | | | |||||||||||||| | ||||||| |    
T  18107662 taaccacattccacaaatgcatgtgcagcaatcacacagtggttcgatgcaatgagaaagatctagatatactcttaaccttcaaacatggcatcaataa 18107761  T
Q  142 tagtattggtgggatatcaacgtggtcaaccgaaaaagattgttgtgcatgggaaggagtctactgtga 210  Q
    |||| || |   | | |||| |||||||||||||||||||||||||| |||||||| |||| |||||||    
T  18107762 tagtcttagcatgttttcaaggtggtcaaccgaaaaagattgttgtgtatgggaagaagtccactgtga 18107830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 72 - 210
Target Start/End: Original strand, 19419235 - 19419373
Alignment:
Q  72 atcacactgtggttagatgcaatgagaaagatcgagagacattgttaaccttcaaacaggacatcaatgatagtattggtgggatatcaacgtggtcaac 171  Q
    |||||||  ||||| |||||||||||||||||| ||||| | | |||||||||||||||| ||||||| ||||| || |   | | |||| ||||||| |    
T  19419235 atcacacaatggttcgatgcaatgagaaagatctagagatactcttaaccttcaaacagggcatcaataatagtcttagcctgttttcaaggtggtcagc 19419334  T
Q  172 cgaaaaagattgttgtgcatgggaaggagtctactgtga 210  Q
     |||||||||||||||| ||||||||||||| |||||||    
T  19419335 agaaaaagattgttgtgtatgggaaggagtccactgtga 19419373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 171
Target Start/End: Original strand, 18022067 - 18022220
Alignment:
Q  18 ttcttttgcttctacttttatatgtaaccacatttcacaaaatcacttgcagcaatcacactgtggttagatgcaatgagaaagatcgagagacattgtt 117  Q
    |||||||||||||||||||||   |||||||||| ||||||| ||  ||||||||| |||| |||||   ||||||||| ||||||||||||||| | ||    
T  18022067 ttcttttgcttctacttttatcaataaccacattccacaaaaccatgtgcagcaattacacagtggtgcaatgcaatgaaaaagatcgagagacactctt 18022166  T
Q  118 aaccttcaaacaggacatcaatgatagtattggtgggatatcaacgtggtcaac 171  Q
    || ||| ||||  |  |||||||||||| || || ||||||||| |||||||||    
T  18022167 aaactttaaacgtggaatcaatgatagtcttagtcggatatcaaagtggtcaac 18022220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 210
Target Start/End: Complemental strand, 17728437 - 17728299
Alignment:
Q  72 atcacactgtggttagatgcaatgagaaagatcgagagacattgttaaccttcaaacaggacatcaatgatagtattggtgggatatcaacgtggtcaac 171  Q
    |||||||  ||||| ||||||||||||||||||  |||||| ||||||| |||||||| | |||||||| |||   || | |||||||| |||||| |||    
T  17728437 atcacacattggttcgatgcaatgagaaagatcttgagacactgttaactttcaaacaaggcatcaatgctagctctgttcggatatcatcgtggttaac 17728338  T
Q  172 cgaaaaagattgttgtgcatgggaaggagtctactgtga 210  Q
      || || |||||||||| |||||||| ||| |||||||    
T  17728337 tcaacaaaattgttgtgcttgggaaggtgtccactgtga 17728299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 210
Target Start/End: Complemental strand, 19029666 - 19029528
Alignment:
Q  72 atcacactgtggttagatgcaatgagaaagatcgagagacattgttaaccttcaaacaggacatcaatgatagtattggtgggatatcaacgtggtcaac 171  Q
    |||||||  ||||| ||||||||||||||||||  |||||| ||||||| |||||||| | |||||||| |||   || | |||||||| |||||| |||    
T  19029666 atcacacattggttcgatgcaatgagaaagatcttgagacactgttaactttcaaacaaggcatcaatgctagctctgttcggatatcatcgtggttaac 19029567  T
Q  172 cgaaaaagattgttgtgcatgggaaggagtctactgtga 210  Q
      || || |||||||||| |||||||| ||| |||||||    
T  19029566 tcaacaaaattgttgtgcttgggaaggtgtccactgtga 19029528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 18015246 - 18015340
Alignment:
Q  5 acacgaatatcatttcttttgcttctacttttatatgtaaccacatttcacaaaatcacttgcagcaatcacactgtggttagatgcaatgagaa 99  Q
    |||| ||| ||| ||||||| ||||| ||||||| | |||||||||| |||| || ||  ||||||||||||||  ||||| |||||||||||||    
T  18015246 acacaaatgtcacttcttttccttctccttttatctataaccacattccacataaccatgtgcagcaatcacacattggttcgatgcaatgagaa 18015340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 19423940 - 19423988
Alignment:
Q  159 caacgtggtcaaccgaaaaagattgttgtgcatgggaaggagtctactg 207  Q
    ||||||||||| ||||| |||||||||||||| ||||||||||| ||||    
T  19423940 caacgtggtcagccgaagaagattgttgtgcaagggaaggagtccactg 19423988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 8458695 - 8458887
Alignment:
Q  18 ttcttttgcttctacttttatatgtaaccacatttcacaaaatcacttgcagcaatcacactgtggttagatgcaatgagaaagatcgagagacattgtt 117  Q
    |||||||||||||||| |||| |||||||||||| ||||||| ||  |||||||| |||||  || ||  |||||||||||| || ||| | ||| ||||    
T  8458695 ttcttttgcttctactgttatctgtaaccacattccacaaaagcatgtgcagcaaccacacattgttttcatgcaatgagaatgaccgacaaacaatgtt 8458794  T
Q  118 aaccttcaaacaggacatcaatgatagtattggtgggatatcaacgtggtcaaccgaaaaagattgttgtgcatgggaaggagtctactgtga 210  Q
    |||||||||||||| | |||||||||||  ||||   ||||||||||||||||| ||||||||||||||||| ||| |||||||| |||||||    
T  8458795 aaccttcaaacagggcctcaatgatagtcgtggtataatatcaacgtggtcaactgaaaaagattgttgtgcgtggaaaggagtccactgtga 8458887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 65 - 210
Target Start/End: Complemental strand, 13667644 - 13667499
Alignment:
Q  65 tgcagcaatcacactgtggttagatgcaatgagaaagatcgagagacattgttaaccttcaaacaggacatcaatgatagtattggtgggatatcaacgt 164  Q
    |||| |||||||||  |||||  ||||||||||||||||||||||||| | ||||||||||||||||   ||||||| | | ||||| ||||||||||||    
T  13667644 tgcaacaatcacacattggttcaatgcaatgagaaagatcgagagacactcttaaccttcaaacagggagtcaatgacactcttggtcggatatcaacgt 13667545  T
Q  165 ggtcaaccgaaaaagattgttgtgcatgggaaggagtctactgtga 210  Q
    ||||||||||||||  ||||||||| |||||||||||| |||||||    
T  13667544 ggtcaaccgaaaaaagttgttgtgcttgggaaggagtccactgtga 13667499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 30 - 202
Target Start/End: Original strand, 15531585 - 15531757
Alignment:
Q  30 tacttttatatgtaaccacatttcacaaaatcacttgcagcaatcacactgtggttagatgcaatgagaaagatcgagagacattgttaaccttcaaaca 129  Q
    ||||||||| | | |||||||| ||||||| ||  |||| |||| ||||  | |||  ||| ||||||||||||||||||||| ||||||||||||||||    
T  15531585 tacttttatgtattaccacattccacaaaagcatgtgcaccaataacacatttgttcaatgtaatgagaaagatcgagagacactgttaaccttcaaaca 15531684  T
Q  130 ggacatcaatgatagtattggtgggatatcaacgtggtcaaccgaaaaagattgttgtgcatgggaaggagtc 202  Q
    ||   ||||||||||| ||||| |||| |||| |||||| |  |||||| |||||||||| |||| |||||||    
T  15531685 gggtgtcaatgatagttttggtcggatttcaatgtggtctattgaaaaaaattgttgtgcttggggaggagtc 15531757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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