View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9326-LTR4-TNT-insertion-4 (Length: 415)
Name: F9326-LTR4-TNT-insertion-4
Description: F9326-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9326-LTR4-TNT-insertion-4 |
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Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 11 - 405
Target Start/End: Complemental strand, 40633240 - 40632846
Alignment:
| Q |
11 |
catagatgtagaacacatttcctcgaaaatcttcatggcctcaccaacattcttctttaaacaatatgcatgtataattgccccatatgcgaaaacagat |
110 |
Q |
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| T |
40633240 |
catagatgtagaacacatttcctcgaaaatcttcatggcctcaccaacattcttctttaaacaatatgcatgtataattgccccatatgcgaaaacagat |
40633141 |
T |
|
| Q |
111 |
ggctcaaaaccctcttcaatcatctctttcatcatcttggtagcggttgcagaatctccagctttgccaaggtaagaaactaaagtattgtaagtgacag |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40633140 |
ggctcaaaaccctcttcaatcatctctttcatcatcttggtagcggttgcagaatctccagctttgccaaggtaagaaactaaagtattgtaagtgacag |
40633041 |
T |
|
| Q |
211 |
tatcaggcttaacttcaatttcttccatcttgttgagcatttcagatacttgttctagcttcttcttcttacggaatccacttaaaagagcatagtagca |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40633040 |
tatcaggcttaacttcaatttcttccatcttgttgagcatttcagatacttgttctagcttcttcttcttacggaatccacttaaaagagcatagtagca |
40632941 |
T |
|
| Q |
311 |
agttctatcaagacccagcccaacttgtttcaactgtgacaaatccatccttctagcaatggttaaactggatatcaaactatagtaaacaattg |
405 |
Q |
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| T |
40632940 |
agttctatcaagacccagcccaacttgtttcaactgtgacaaatccatccttctagcaatggttaaactagatatcaaactatagtaaacaattg |
40632846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 11 - 292
Target Start/End: Original strand, 41236461 - 41236742
Alignment:
| Q |
11 |
catagatgtagaacacatttcctcgaaaatcttcatggcctcaccaacattcttctttaaacaatatgcatgtataattgccccatatgcgaaaacagat |
110 |
Q |
| |
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|||||||||||||||||||||| | |||||||||||||||||| ||| ||||| |||||||||||||||||||| | ||||||||||| || |||||| |
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| T |
41236461 |
catagatgtagaacacatttccccaaaaatcttcatggcctcatcaatgttcttttttaaacaatatgcatgtatgactgccccatatgtgacaacagag |
41236560 |
T |
|
| Q |
111 |
ggctcaaaaccctcttcaatcatctctttcatcatcttggtagcggttgcagaatctccagctttgccaaggtaagaaactaaagtattgtaagtgacag |
210 |
Q |
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|||| || |||||||| |||||||| |||||| | ||||||||| |||||| |||||||||||||||||||||||||||| ||||| || || |||||| |
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| T |
41236561 |
ggcttaagaccctctttaatcatctttttcattaccttggtagcagttgcaaaatctccagctttgccaaggtaagaaaccaaagtgttataggtgacaa |
41236660 |
T |
|
| Q |
211 |
tatcaggcttaacttcaatttcttccatcttgttgagcatttcagatacttgttctagcttcttcttcttacggaatccact |
292 |
Q |
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| T |
41236661 |
tgtcgggcttgactccattttcttccatttcgttgagcatttcataaactcgctccagcttcttcttcttgcagaatccact |
41236742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 405
Target Start/End: Original strand, 41236820 - 41236870
Alignment:
| Q |
355 |
ccatccttctagcaatggttaaactggatatcaaactatagtaaacaattg |
405 |
Q |
| |
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||||||||| |||||||||||||| |||||||||| |||||||||||||| |
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| T |
41236820 |
ccatccttccagcaatggttaaaccagatatcaaacaatagtaaacaattg |
41236870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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