View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9326-LTR4-TNT-insertion-8 (Length: 616)
Name: F9326-LTR4-TNT-insertion-8
Description: F9326-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9326-LTR4-TNT-insertion-8 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 578; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 10 - 608
Target Start/End: Original strand, 241598 - 242196
Alignment:
| Q |
10 |
tacatgcaagctgtcaagagctacttaggtatactcttttactcttgtatacatatgnnnnnnncactcgattttgccccgttctgatgtgttctgtcag |
109 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
241598 |
tacatgcaagctgtcaagagctacttaggtatactcttttactcttgtatacatatgaaaaaaacactcgattttgccccgttctgatgtgttctgtcag |
241697 |
T |
|
| Q |
110 |
acaatttgtttcgttttgatacatgcacacttctaaatatatgagacatattttagcaacgagggcaagcggatgtcccctttactattcaagaattgat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
241698 |
acaatttgtttcgttttgatacatgcacacttctaaatatatgagacatattttagcaacgagggcaagcggatgtcccctttactattcaagaattgat |
241797 |
T |
|
| Q |
210 |
ggtttacactgatagtgcatgtgaaagaactcgtaaaatctagatcacaaaactatgtattgttcaaacataaagatgagatcaagagctctgcaatggt |
309 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
241798 |
ggtttacactgatagtgcatgtgaaagaactcgtaaaatctagatcacaaaactatgtattgttcaaacataaagatgagatcaagagctctgcaatggt |
241897 |
T |
|
| Q |
310 |
gaatacagagaatgaaagagataattgttctaaccaagttctaaccagagagaaactgtcctaaccaacttctaacaatatttcgtaatgacttactcgc |
409 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
241898 |
gaatacagagaatgaaagagataattgttctaaccaagttctaaccagagagaaactgtcctaaccaacttctaacaatatttcgtaatgacttactcgc |
241997 |
T |
|
| Q |
410 |
cacttttccctccttttataacagaatattccttaaagtccaaatattgggtctgctggcatgctgtatcttgttgttctatcagcgtgtctcattttct |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
241998 |
cacttttccctccttttataacagaatattccttaaagtccaaatattgggtctgctggcatgctgtatcttgttgttctatcagcgtgtctcattttct |
242097 |
T |
|
| Q |
510 |
ctcaaagagttgatggttttaggtcacaataataaactatatttacatatttataacaaattattaagaaatagtctaattttctactatttttaatta |
608 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
242098 |
ctcaaagagttgatggttttaggtcacaataataaactatatttacatatttataacaaattattaagaaatagtctaattttctactatttttaatta |
242196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 132 - 343
Target Start/End: Complemental strand, 223482 - 223271
Alignment:
| Q |
132 |
atgcacacttctaaatatatgagacatattttagcaacgagggcaagcggatgtcccctttactattcaagaattgatggtttacactgatagtgcatgt |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||| |||||||||||| ||||||| |||| | |
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|
| T |
223482 |
atgcacacttctaaatatatgagacatattttagcaacgagggcgagcagatgtcccctttactcttcaagagttgatggtttacgctgatagcgcattt |
223383 |
T |
|
| Q |
232 |
gaaagaactcgtaaaatctagatcacaaaactatgtattgttcaaacataaagatgagatcaagagctctgcaatggtgaatacagagaatgaaagagat |
331 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| ||||| | |||||| || ||||||||||| |||||||||||||||| |||||||||||| |
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| T |
223382 |
gaaagaactcgtaaaatctagatcacgaaactatgtattattcaatgagaaagataagctcaagagctctacaatggtgaatacagaaaatgaaagagat |
223283 |
T |
|
| Q |
332 |
aattgttctaac |
343 |
Q |
| |
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|||||||||||| |
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| T |
223282 |
aattgttctaac |
223271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 223563 - 223508
Alignment:
| Q |
10 |
tacatgcaagctgtcaagagctacttaggtatactcttttactcttgtatacatat |
65 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
223563 |
tacatgcaagctgtcaagagctacttaggtatactcttttactcttgtatacatat |
223508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 379 - 448
Target Start/End: Complemental strand, 223277 - 223207
Alignment:
| Q |
379 |
ttctaacaatatttcgtaatgacttactcgccactttt-ccctccttttataacagaatattccttaaagt |
448 |
Q |
| |
|
||||||||||||||| ||||||||||||||| | |||| ||| |||||||||||||| ||||||||||||| |
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|
| T |
223277 |
ttctaacaatatttcttaatgacttactcgctagttttccccaccttttataacagagtattccttaaagt |
223207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 279 - 333
Target Start/End: Complemental strand, 50694690 - 50694636
Alignment:
| Q |
279 |
ataaagatgagatcaagagctctgcaatggtgaatacagagaatgaaagagataa |
333 |
Q |
| |
|
|||| |||||| ||||||||||| ||||||||| ||||| |||||||||||||| |
|
|
| T |
50694690 |
ataatgatgagctcaagagctctataatggtgaaaacagaaaatgaaagagataa |
50694636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 348 - 436
Target Start/End: Original strand, 12426799 - 12426888
Alignment:
| Q |
348 |
ttctaaccagagagaaactgtcctaaccaacttctaacaatatttcgtaatgacttactcgccacttttccctc-cttttataacagaat |
436 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||| |||||||||| ||||| |||| | || |||||||| ||||||||||||||| |
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|
| T |
12426799 |
ttctaaccagagggaaactctcctaaccaacttctgacaatatttctcaatgagttacacattacctttccctcgcttttataacagaat |
12426888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 350 - 430
Target Start/End: Original strand, 33238112 - 33238193
Alignment:
| Q |
350 |
ctaaccagagagaaactgtcctaaccaacttctaacaatatttcgtaatgacttactcgccacttttccct-ccttttataa |
430 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||| | ||||||||| | || ||||||| |||||||||| |
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|
| T |
33238112 |
ctaaccagagagaaactctcttaaccaacttctaacaatatttctccacgacttactcactacatttccctcccttttataa |
33238193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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