View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9327-LTR4-TNT-insertion-10 (Length: 577)
Name: F9327-LTR4-TNT-insertion-10
Description: F9327-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9327-LTR4-TNT-insertion-10 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 265 - 569
Target Start/End: Complemental strand, 2370741 - 2370437
Alignment:
| Q |
265 |
cctgaaatctcaaataattaggattttcttaaaaaacatatttataaaagtagcttgaaaataaaaatcaaacatgtgaattttataatattaggttaaa |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2370741 |
cctgaaatctcaaataattaggattttcttaaaaaacatatttataaaagtagcttgaaaataaaaatcaaacatgtgaattttataatattaggttaaa |
2370642 |
T |
|
| Q |
365 |
tatattttatattttgaacgaagttaaaacttttttaattgtacaatgaaacattgaagtttgaatctataacatatacataccctctaatcactaggta |
464 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2370641 |
tatattttatattttgaacgaagttaaaacttttttaattgtacaatgaaacattgaagtttgaatctataacatatacataccctctaatcactaggta |
2370542 |
T |
|
| Q |
465 |
acgcaccaagaaagaagagagctatgtctctctttattttattgaatcctacaaaatatttctttgtgtttaagttagtaaatcatcgtcttgtgattct |
564 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2370541 |
acgcaccaagaaagaagagagctatgtctctctttattttattgaatcctacaaaatatttctttgtgtttaagttagtaaatcatcgtcttgtgattct |
2370442 |
T |
|
| Q |
565 |
tatta |
569 |
Q |
| |
|
||||| |
|
|
| T |
2370441 |
tatta |
2370437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 9 - 212
Target Start/End: Complemental strand, 2370997 - 2370794
Alignment:
| Q |
9 |
gtaatgcatccaagggaatggtggctgatgaaaaggaaaaaggaattcttaatgaacaaggggccactagtgatgaggatgaagaccgaatttgaagact |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2370997 |
gtaatgcatccaagggaatggtggctgatgaaaaggaaaaaggaattcttaatgaacaaggggccactagtgatgaggatgaagaccgaatttgaagact |
2370898 |
T |
|
| Q |
109 |
agaatatgaaatccatgtgtgtacccnnnnnnntaataattagatccatgtgtttattacaaagtatgatgtttgagaacttgtatttgtaatgaaaatt |
208 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2370897 |
agaatatgaaatccatgtgtgtacccaaaaaaataataattagatccatgtgtttattacaaagtatgatgtttgagaacttgtatttgtaatgaaaatt |
2370798 |
T |
|
| Q |
209 |
tgga |
212 |
Q |
| |
|
|||| |
|
|
| T |
2370797 |
tgga |
2370794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 9806758 - 9806805
Alignment:
| Q |
152 |
atccatgtgtttattacaaagtatgatgtttgagaacttgtatttgta |
199 |
Q |
| |
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|||||||| ||||||||| |||||||||||||| |||||||||||||| |
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|
| T |
9806758 |
atccatgtatttattacatagtatgatgtttgaaaacttgtatttgta |
9806805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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