View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9327-LTR4-TNT-insertion-11 (Length: 478)

Name: F9327-LTR4-TNT-insertion-11
Description: F9327-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9327-LTR4-TNT-insertion-11
F9327-LTR4-TNT-insertion-11
[»] chr1 (5 HSPs)
chr1 (9-416)||(7165751-7166158)
chr1 (430-470)||(7166173-7166213)
chr1 (430-470)||(11215085-11215125)
chr1 (430-470)||(45333658-45333698)
chr1 (430-470)||(51050274-51050314)
[»] scaffold0445 (1 HSPs)
scaffold0445 (430-470)||(3960-4000)
[»] chr8 (3 HSPs)
chr8 (430-470)||(8265352-8265392)
chr8 (430-470)||(23178837-23178877)
chr8 (430-470)||(39169569-39169609)
[»] chr7 (3 HSPs)
chr7 (430-470)||(9697837-9697877)
chr7 (430-470)||(19331446-19331486)
chr7 (430-470)||(48119554-48119594)
[»] chr6 (1 HSPs)
chr6 (430-470)||(3795720-3795760)
[»] chr5 (2 HSPs)
chr5 (430-470)||(11188628-11188668)
chr5 (430-470)||(22569191-22569231)
[»] chr4 (2 HSPs)
chr4 (430-470)||(4700884-4700924)
chr4 (430-470)||(13564214-13564254)
[»] chr3 (5 HSPs)
chr3 (430-470)||(3748548-3748588)
chr3 (430-470)||(17218572-17218612)
chr3 (430-470)||(22501877-22501917)
chr3 (430-470)||(33606886-33606926)
chr3 (430-470)||(34757600-34757640)
[»] chr2 (2 HSPs)
chr2 (430-470)||(38387739-38387779)
chr2 (430-470)||(41566846-41566886)


Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 9 - 416
Target Start/End: Original strand, 7165751 - 7166158
Alignment:
Q  9 aaactataactgaaaattatggtcagatgtgatcaataccatctcaatctcatttacgtagatatttaaaacttagatatctatagcttgtcattaaccc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7165751 aaactataactgaaaattatggtcagatgtgatcaataccatctcaatctcatttacgtagatatttaaaacttagatatctatagcttgtcattaaccc 7165850  T
Q  109 tttnnnnnnnntagttgtgacatccatgtcatcaccatctttgccacctaggtacctattcactgtccttatcactagatgatgttgaacgcaaatagaa 208  Q
    |||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7165851 tttaaaaaaaatagttgtgacatccatgtcatcaccatctttgccacctaggtacctattcactgtccttatcactagatgatgttgaacgcaaatagaa 7165950  T
Q  209 caaagttggagtcacatattatgtcctctaaattaaacatttgaagttttacataaattgtgtggtataaaactaagtctccaaaacggagttaagacaa 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7165951 caaagttggagtcacatattatgtcctctaaattaaacatttgaagttttacataaattgtgtggtataaaactaagtctccaaaacggagttaagacaa 7166050  T
Q  309 tctctacacaatagagaatctaacaaaccatcacccctaataaattacattatgctcaaaatatgttcatatttcatatttgaattcttgaatatcactt 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7166051 tctctacacaatagagaatctaacaaaccatcacccctaataaattacattatgctcaaaatatgttcatatttcatatttgaattcttgaatatcactt 7166150  T
Q  409 catcaatg 416  Q
    ||||||||    
T  7166151 catcaatg 7166158  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 470
Target Start/End: Original strand, 7166173 - 7166213
Alignment:
Q  430 ggtcaagtacccaaggggctagagctcacacaattaaattg 470  Q
    ||||||||| || || |||||||||||||||||||||||||    
T  7166173 ggtcaagtagcctagtggctagagctcacacaattaaattg 7166213  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 470
Target Start/End: Complemental strand, 11215125 - 11215085
Alignment:
Q  430 ggtcaagtacccaaggggctagagctcacacaattaaattg 470  Q
    ||||||||| || || |||||||||||||||||||||||||    
T  11215125 ggtcaagtagcctagtggctagagctcacacaattaaattg 11215085  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 470
Target Start/End: Original strand, 45333658 - 45333698
Alignment:
Q  430 ggtcaagtacccaaggggctagagctcacacaattaaattg 470  Q
    ||||||||| || || |||||||||||||||||||||||||    
T  45333658 ggtcaagtagcctagtggctagagctcacacaattaaattg 45333698  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 470
Target Start/End: Complemental strand, 51050314 - 51050274
Alignment:
Q  430 ggtcaagtacccaaggggctagagctcacacaattaaattg 470  Q
    ||||||||| || || |||||||||||||||||||||||||    
T  51050314 ggtcaagtagcctagtggctagagctcacacaattaaattg 51050274  T

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Target: scaffold0445 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 470
Target Start/End: Original strand, 3960 - 4000
Alignment:
Q  430 ggtcaagtacccaaggggctagagctcacacaattaaattg 470  Q
    ||||||||| || || |||||||||||||||||||||||||    
T  3960 ggtcaagtagcctagtggctagagctcacacaattaaattg 4000  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 470
Target Start/End: Complemental strand, 8265392 - 8265352
Alignment:
Q  430 ggtcaagtacccaaggggctagagctcacacaattaaattg 470  Q
    ||||||||| || || |||||||||||||||||||||||||    
T  8265392 ggtcaagtagcctagtggctagagctcacacaattaaattg 8265352  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 470
Target Start/End: Original strand, 23178837 - 23178877
Alignment:
Q  430 ggtcaagtacccaaggggctagagctcacacaattaaattg 470  Q
    ||||||||| || || |||||||||||||||||||||||||    
T  23178837 ggtcaagtagcctagtggctagagctcacacaattaaattg 23178877  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 470
Target Start/End: Complemental strand, 39169609 - 39169569
Alignment:
Q  430 ggtcaagtacccaaggggctagagctcacacaattaaattg 470  Q
    ||||||||| || || |||||||||||||||||||||||||    
T  39169609 ggtcaagtagcctagtggctagagctcacacaattaaattg 39169569  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 470
Target Start/End: Original strand, 9697837 - 9697877
Alignment:
Q  430 ggtcaagtacccaaggggctagagctcacacaattaaattg 470  Q
    ||||||||| || || |||||||||||||||||||||||||    
T  9697837 ggtcaagtagcctagtggctagagctcacacaattaaattg 9697877  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 470
Target Start/End: Original strand, 19331446 - 19331486
Alignment:
Q  430 ggtcaagtacccaaggggctagagctcacacaattaaattg 470  Q
    ||||||||| || || |||||||||||||||||||||||||    
T  19331446 ggtcaagtagcctagtggctagagctcacacaattaaattg 19331486  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 470
Target Start/End: Complemental strand, 48119594 - 48119554
Alignment:
Q  430 ggtcaagtacccaaggggctagagctcacacaattaaattg 470  Q
    ||||||||| || || |||||||||||||||||||||||||    
T  48119594 ggtcaagtagcctagtggctagagctcacacaattaaattg 48119554  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 470
Target Start/End: Original strand, 3795720 - 3795760
Alignment:
Q  430 ggtcaagtacccaaggggctagagctcacacaattaaattg 470  Q
    ||||||||| || || |||||||||||||||||||||||||    
T  3795720 ggtcaagtagcctagtggctagagctcacacaattaaattg 3795760  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 470
Target Start/End: Original strand, 11188628 - 11188668
Alignment:
Q  430 ggtcaagtacccaaggggctagagctcacacaattaaattg 470  Q
    ||||||||| || || |||||||||||||||||||||||||    
T  11188628 ggtcaagtagcctagtggctagagctcacacaattaaattg 11188668  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 470
Target Start/End: Original strand, 22569191 - 22569231
Alignment:
Q  430 ggtcaagtacccaaggggctagagctcacacaattaaattg 470  Q
    ||||||||| || || |||||||||||||||||||||||||    
T  22569191 ggtcaagtagcctagtggctagagctcacacaattaaattg 22569231  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 470
Target Start/End: Original strand, 4700884 - 4700924
Alignment:
Q  430 ggtcaagtacccaaggggctagagctcacacaattaaattg 470  Q
    ||||||||| || || |||||||||||||||||||||||||    
T  4700884 ggtcaagtagcctagtggctagagctcacacaattaaattg 4700924  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 470
Target Start/End: Original strand, 13564214 - 13564254
Alignment:
Q  430 ggtcaagtacccaaggggctagagctcacacaattaaattg 470  Q
    ||||||||| || || |||||||||||||||||||||||||    
T  13564214 ggtcaagtagcctagtggctagagctcacacaattaaattg 13564254  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 470
Target Start/End: Original strand, 3748548 - 3748588
Alignment:
Q  430 ggtcaagtacccaaggggctagagctcacacaattaaattg 470  Q
    ||||||||| || || |||||||||||||||||||||||||    
T  3748548 ggtcaagtagcctagtggctagagctcacacaattaaattg 3748588  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 470
Target Start/End: Complemental strand, 17218612 - 17218572
Alignment:
Q  430 ggtcaagtacccaaggggctagagctcacacaattaaattg 470  Q
    ||||||||| || || |||||||||||||||||||||||||    
T  17218612 ggtcaagtagcctagtggctagagctcacacaattaaattg 17218572  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 470
Target Start/End: Original strand, 22501877 - 22501917
Alignment:
Q  430 ggtcaagtacccaaggggctagagctcacacaattaaattg 470  Q
    ||||||||| || || |||||||||||||||||||||||||    
T  22501877 ggtcaagtagcctagtggctagagctcacacaattaaattg 22501917  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 470
Target Start/End: Original strand, 33606886 - 33606926
Alignment:
Q  430 ggtcaagtacccaaggggctagagctcacacaattaaattg 470  Q
    ||||||||| || || |||||||||||||||||||||||||    
T  33606886 ggtcaagtagcctagtggctagagctcacacaattaaattg 33606926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 470
Target Start/End: Complemental strand, 34757640 - 34757600
Alignment:
Q  430 ggtcaagtacccaaggggctagagctcacacaattaaattg 470  Q
    ||||||||| || || |||||||||||||||||||||||||    
T  34757640 ggtcaagtagcctagtggctagagctcacacaattaaattg 34757600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 470
Target Start/End: Complemental strand, 38387779 - 38387739
Alignment:
Q  430 ggtcaagtacccaaggggctagagctcacacaattaaattg 470  Q
    ||||||||| || || |||||||||||||||||||||||||    
T  38387779 ggtcaagtagcctagtggctagagctcacacaattaaattg 38387739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 470
Target Start/End: Complemental strand, 41566886 - 41566846
Alignment:
Q  430 ggtcaagtacccaaggggctagagctcacacaattaaattg 470  Q
    ||||||||| || || |||||||||||||||||||||||||    
T  41566886 ggtcaagtagcctagtggctagagctcacacaattaaattg 41566846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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