View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9327-LTR4-TNT-insertion-12 (Length: 515)

Name: F9327-LTR4-TNT-insertion-12
Description: F9327-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9327-LTR4-TNT-insertion-12
F9327-LTR4-TNT-insertion-12
[»] chr8 (25 HSPs)
chr8 (10-505)||(31330958-31331454)
chr8 (22-195)||(11150893-11151064)
chr8 (23-157)||(10029133-10029266)
chr8 (22-195)||(20542357-20542529)
chr8 (52-153)||(1342322-1342421)
chr8 (22-165)||(6270151-6270293)
chr8 (20-157)||(43917555-43917691)
chr8 (55-192)||(44648912-44649048)
chr8 (20-166)||(18647461-18647605)
chr8 (22-195)||(3137370-3137542)
chr8 (22-170)||(17720174-17720322)
chr8 (50-165)||(35901417-35901531)
chr8 (50-170)||(2768557-2768680)
chr8 (23-133)||(27506979-27507088)
chr8 (107-152)||(12201846-12201891)
chr8 (107-152)||(12446274-12446319)
chr8 (21-165)||(600341-600484)
chr8 (107-179)||(37561486-37561558)
chr8 (470-505)||(17823932-17823967)
chr8 (470-505)||(22771905-22771940)
chr8 (107-165)||(33621420-33621478)
chr8 (88-157)||(3347520-3347589)
chr8 (92-157)||(18200690-18200755)
chr8 (26-75)||(27162809-27162858)
chr8 (88-153)||(547097-547166)
[»] chr2 (23 HSPs)
chr2 (18-171)||(18717816-18717968)
chr2 (21-165)||(3689620-3689761)
chr2 (20-165)||(23453312-23453457)
chr2 (14-155)||(41436287-41436427)
chr2 (16-195)||(43080277-43080454)
chr2 (21-165)||(40574144-40574287)
chr2 (19-173)||(31904216-31904368)
chr2 (116-195)||(36087406-36087485)
chr2 (19-165)||(13738396-13738541)
chr2 (18-165)||(38024182-38024327)
chr2 (88-195)||(40346743-40346850)
chr2 (110-195)||(4557629-4557714)
chr2 (23-132)||(6315858-6315966)
chr2 (88-193)||(1004748-1004852)
chr2 (91-151)||(4978767-4978827)
chr2 (91-151)||(4996675-4996735)
chr2 (26-165)||(14952998-14953137)
chr2 (110-165)||(8580569-8580624)
chr2 (124-195)||(8793880-8793951)
chr2 (19-77)||(34334462-34334520)
chr2 (95-172)||(7141156-7141233)
chr2 (22-67)||(8580482-8580527)
chr2 (110-155)||(32909416-32909461)
[»] chr1 (20 HSPs)
chr1 (22-193)||(8001720-8001890)
chr1 (88-181)||(48579931-48580024)
chr1 (52-155)||(26829492-26829594)
chr1 (44-165)||(32187046-32187165)
chr1 (88-164)||(10226464-10226540)
chr1 (26-165)||(46295872-46296010)
chr1 (25-165)||(27688451-27688591)
chr1 (22-165)||(13969100-13969242)
chr1 (95-152)||(5069745-5069802)
chr1 (24-153)||(30109198-30109327)
chr1 (92-165)||(33148132-33148205)
chr1 (107-195)||(17644742-17644830)
chr1 (49-165)||(30941470-30941585)
chr1 (50-152)||(37597146-37597247)
chr1 (470-505)||(25089158-25089193)
chr1 (116-170)||(3529434-3529488)
chr1 (22-68)||(12527561-12527607)
chr1 (471-505)||(26093406-26093440)
chr1 (22-71)||(37540299-37540348)
chr1 (19-120)||(52860807-52860908)
[»] chr3 (27 HSPs)
chr3 (22-195)||(42437687-42437857)
chr3 (50-193)||(6785767-6785910)
chr3 (15-152)||(48338776-48338912)
chr3 (36-172)||(11676730-11676865)
chr3 (88-165)||(29032447-29032524)
chr3 (50-186)||(28709546-28709681)
chr3 (21-155)||(49261749-49261882)
chr3 (88-165)||(635706-635783)
chr3 (92-157)||(44698257-44698322)
chr3 (24-153)||(8326110-8326237)
chr3 (21-155)||(49543174-49543307)
chr3 (88-157)||(55446767-55446836)
chr3 (111-151)||(27639554-27639594)
chr3 (110-165)||(38359104-38359159)
chr3 (51-165)||(26613066-26613180)
chr3 (55-153)||(50958863-50958960)
chr3 (107-154)||(3215095-3215142)
chr3 (110-165)||(4020155-4020210)
chr3 (470-505)||(10366718-10366753)
chr3 (470-505)||(12904875-12904910)
chr3 (470-505)||(29024034-29024069)
chr3 (17-151)||(34145920-34146052)
chr3 (380-410)||(50173327-50173357)
chr3 (122-195)||(31672865-31672938)
chr3 (113-165)||(12109710-12109762)
chr3 (135-195)||(12373070-12373130)
chr3 (469-505)||(37804795-37804831)
[»] chr5 (17 HSPs)
chr5 (18-170)||(30840594-30840744)
chr5 (44-164)||(27544581-27544700)
chr5 (107-197)||(30293792-30293882)
chr5 (20-165)||(27365972-27366116)
chr5 (88-157)||(36482086-36482155)
chr5 (88-179)||(22294019-22294110)
chr5 (430-474)||(8611778-8611822)
chr5 (93-193)||(11815951-11816051)
chr5 (21-179)||(41645003-41645158)
chr5 (470-505)||(6315844-6315879)
chr5 (106-152)||(14976956-14977002)
chr5 (106-151)||(1920761-1920806)
chr5 (22-71)||(5471264-5471313)
chr5 (88-165)||(14044683-14044758)
chr5 (380-416)||(950624-950660)
chr5 (83-143)||(2089139-2089199)
chr5 (109-165)||(18242495-18242551)
[»] chr7 (20 HSPs)
chr7 (22-195)||(19676965-19677137)
chr7 (22-155)||(16979912-16980044)
chr7 (107-195)||(18756917-18757005)
chr7 (50-172)||(16685729-16685852)
chr7 (50-172)||(17659965-17660088)
chr7 (21-157)||(23142662-23142797)
chr7 (92-189)||(8896575-8896672)
chr7 (22-146)||(34993148-34993271)
chr7 (106-165)||(1309725-1309784)
chr7 (95-197)||(31850717-31850819)
chr7 (44-157)||(37928292-37928404)
chr7 (92-152)||(25530559-25530619)
chr7 (88-178)||(8746171-8746260)
chr7 (113-151)||(31487725-31487763)
chr7 (471-504)||(17828428-17828461)
chr7 (88-165)||(21515054-21515131)
chr7 (108-157)||(31249568-31249617)
chr7 (118-191)||(34993073-34993146)
chr7 (19-68)||(41760436-41760485)
chr7 (110-170)||(18220982-18221042)
[»] chr4 (22 HSPs)
chr4 (22-165)||(27284042-27284184)
chr4 (49-197)||(2824784-2824932)
chr4 (92-192)||(31861402-31861502)
chr4 (18-195)||(12094924-12095100)
chr4 (88-165)||(13967880-13967957)
chr4 (21-165)||(52837265-52837411)
chr4 (107-155)||(44190273-44190321)
chr4 (92-195)||(12076399-12076502)
chr4 (88-155)||(28176811-28176877)
chr4 (92-186)||(37183077-37183171)
chr4 (88-157)||(2565420-2565489)
chr4 (88-181)||(7437814-7437907)
chr4 (88-165)||(31089786-31089862)
chr4 (470-505)||(22130054-22130089)
chr4 (110-197)||(31089485-31089572)
chr4 (470-505)||(35311298-35311333)
chr4 (88-195)||(48419108-48419215)
chr4 (470-505)||(49428417-49428452)
chr4 (471-505)||(26147690-26147724)
chr4 (379-416)||(4068407-4068444)
chr4 (88-132)||(19480572-19480616)
chr4 (113-165)||(43970047-43970099)
[»] chr6 (16 HSPs)
chr6 (24-165)||(32134018-32134158)
chr6 (110-195)||(17834947-17835032)
chr6 (89-165)||(5611130-5611206)
chr6 (19-195)||(227300-227477)
chr6 (26-195)||(19320242-19320411)
chr6 (108-195)||(17453944-17454031)
chr6 (470-505)||(17828951-17828986)
chr6 (49-195)||(6770830-6770976)
chr6 (44-170)||(17345838-17345963)
chr6 (21-102)||(31223164-31223245)
chr6 (88-153)||(33121324-33121389)
chr6 (470-505)||(13087541-13087576)
chr6 (470-505)||(15058128-15058163)
chr6 (44-119)||(27082303-27082377)
chr6 (470-505)||(31894278-31894313)
chr6 (20-132)||(30929463-30929575)
[»] scaffold0002 (1 HSPs)
scaffold0002 (21-165)||(120638-120781)
[»] scaffold0103 (1 HSPs)
scaffold0103 (54-172)||(28843-28962)
[»] scaffold0299 (1 HSPs)
scaffold0299 (49-171)||(18011-18133)
[»] scaffold0039 (1 HSPs)
scaffold0039 (92-165)||(29988-30061)
[»] scaffold0957 (1 HSPs)
scaffold0957 (115-193)||(1887-1964)
[»] scaffold0328 (1 HSPs)
scaffold0328 (471-505)||(8050-8084)
[»] scaffold0036 (1 HSPs)
scaffold0036 (88-153)||(36567-36632)
[»] scaffold0329 (1 HSPs)
scaffold0329 (92-132)||(7398-7438)


Alignment Details
Target: chr8 (Bit Score: 425; Significance: 0; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 10 - 505
Target Start/End: Original strand, 31330958 - 31331454
Alignment:
Q  10 tgtattaaattaggagaatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31330958 tgtattaaattaggagaatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttg 31331057  T
Q  110 atcaaaagtaacatcttatatttcgaagataaaatttctatttgtagaatccttaagcaatgctttga-gggcgctggttagcaagatctattaaattat 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  31331058 atcaaaagtaacatcttatatttcgaagataaaatttctatttgtagaatccttaagcaatgctttgaggggcactggttagcaagatctattaaattat 31331157  T
Q  209 tgtacaaaaataatgtcaattaaaatataatagttgattttaaaaactttattactccgtcttaaaataatcgtttctttactannnnnnncatgtttca 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||    
T  31331158 tgtacaaaaataatgtcaattaaaatataatagttgattttaaaaactttattactccgtcttaaaataatcgtttctttactatttttttcatgtttca 31331257  T
Q  309 gaataattgtcactttagaataccatgcagctatcatttgttatttttcactattatatctttattggccttgctaacaagtgcctttagggcactagtt 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31331258 gaataattgtcactttagaataccatgcagctatcatttgttatttttcactattatatctttattggccttgctaacaagtgcctttagggcactagtt 31331357  T
Q  409 aatgattcnnnnnnnnnnnnncaattgataattttcatatataaaaagttgcttttttatgtttcatccaacttaattacttcactaactacaatta 505  Q
    ||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31331358 aatgattcaaaaaaataaaaacaattgataattttcatatataaaaagttgcttttttatgtttcatccaacttaattacttcactaactacaatta 31331454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 22 - 195
Target Start/End: Original strand, 11150893 - 11151064
Alignment:
Q  22 ggagaatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagtaac 121  Q
    |||||||| |||||| ||  |||||| |||||||||||||| ||||| ||| ||  ||| ||||| ||| ||||||||||| | ||||||||||||||||    
T  11150893 ggagaatgctaaccactgccctaagggcattggttaagcattcaaaataagtaa--gtttttaaaaaaaattgtgtaatcattatttgatcaaaagtaac 11150990  T
Q  122 atcttatatttcgaagataaaatttctatttgtagaatccttaagcaatgctttgagggcgctggttagcaaga 195  Q
    |||||||||||| |||| |||| || |||||||||| ||||||| || |||  ||||||| | |||||| ||||    
T  11150991 atcttatatttctaagacaaaaattttatttgtagattccttaatcattgccctgagggcaccggttaggaaga 11151064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 23 - 157
Target Start/End: Original strand, 10029133 - 10029266
Alignment:
Q  23 gagaatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagtaaca 122  Q
    ||||||| |||| ||||| | || ||||||||||||||||||||| |||| |||| ||  | || |||||||| |||||| |  ||||||||||||||||    
T  10029133 gagaatgataactagtgtcccaaagacattggttaagcatccaaatcaagtaaatttttatgaa-aaagttgtataatcattacttgatcaaaagtaaca 10029231  T
Q  123 tcttatatttcgaagataaaatttctatttgtaga 157  Q
    ||||||||||| |||||||||||| ||||||||||    
T  10029232 tcttatatttccaagataaaatttttatttgtaga 10029266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 22 - 195
Target Start/End: Original strand, 20542357 - 20542529
Alignment:
Q  22 ggagaatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaaatgttcttaa-agaaagttgtgtaatcactgtttgatcaaaagtaa 120  Q
    |||||||| ||||| |||  | |||| ||||||||||||||||||||| || ||  ||| |||| | |||  |||||||||| |  || |||||||||||    
T  20542357 ggagaatgctaacccgtgccccaagggcattggttaagcatccaaaacgagtaa--gtttttaagaaaaaagtgtgtaatcattacttaatcaaaagtaa 20542454  T
Q  121 catcttatatttcgaagataaaatttctatttgtagaatccttaagcaatgctttgagggcgctggttagcaaga 195  Q
    ||||||||||||| ||||  ||||||||||||||||| ||||||| ||||||  ||||||| ||| |||||||||    
T  20542455 catcttatatttccaagacgaaatttctatttgtagattccttaaccaatgccctgagggcactgtttagcaaga 20542529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 52 - 153
Target Start/End: Original strand, 1342322 - 1342421
Alignment:
Q  52 tggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttctatt 151  Q
    |||||||||||| |||| ||| || | ||| |||| ||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||    
T  1342322 tggttaagcatctaaaataagtaagttttcataaa-aaagttgtgtaatcattgttt-atcaaaagtaacatcttatatttccaagataaaatttctatt 1342419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 22 - 165
Target Start/End: Complemental strand, 6270293 - 6270151
Alignment:
Q  22 ggagaatgttaaccagtgttctaaggacattggttaagcatc-caaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagtaa 120  Q
    |||||||| |||||||||| ||||||||| ||||||||||||  |||||||| || | ||| |||| ||||||||||||||| |  || ||||||| |||    
T  6270293 ggagaatgctaaccagtgtactaaggacaatggttaagcatcaaaaaacaagtaagttttcataaa-aaagttgtgtaatcattactttatcaaaa-taa 6270196  T
Q  121 catcttatatttcgaagataaaatttctatttgtagaatccttaa 165  Q
    || |||||||||| |||| ||||||| || ||||||| |||||||    
T  6270195 caccttatatttccaagacaaaatttttaattgtagattccttaa 6270151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 20 - 157
Target Start/End: Original strand, 43917555 - 43917691
Alignment:
Q  20 taggagaatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagta 119  Q
    |||||||||| |||||||||   |||||| ||||||||||||||||||||||| |||| ||  |||| ||| ||||||||| | | |||||| |||||||    
T  43917555 taggagaatgctaaccagtgcattaaggatattggttaagcatccaaaacaagtaaatttttataaa-aaaattgtgtaattattatttgattaaaagta 43917653  T
Q  120 acatcttatatttcgaagataaaatttctatttgtaga 157  Q
    ||  |||||||||  |||| |||| || ||||||||||    
T  43917654 acgccttatattttcaagacaaaaattttatttgtaga 43917691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 55 - 192
Target Start/End: Complemental strand, 44649048 - 44648912
Alignment:
Q  55 ttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttctatttgt 154  Q
    |||||||||||||||||  || | ||| | || ||||||||||||||| |  || |||||||||||||| ||||||||  |||| |||||||||||||||    
T  44649048 ttaagcatccaaaacaaataagttttcatgaa-aaagttgtgtaatcattactttatcaaaagtaacattttatattttcaagacaaaatttctatttgt 44648950  T
Q  155 agaatccttaagcaatgctttgagggcgctggttagca 192  Q
    ||| ||||||| || |||   |||||| ||||||||||    
T  44648949 agattccttaaccattgccccgagggcactggttagca 44648912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 166
Target Start/End: Complemental strand, 18647605 - 18647461
Alignment:
Q  20 taggagaatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagta 119  Q
    |||||||||| |||| |||||  |||||  | |||||||||||  |||||||| |||| | | | || ||| |||||||||||   ||| ||||||| ||    
T  18647605 taggagaatgctaactagtgtcgtaagggtaatggttaagcatttaaaacaagtaaatttccatgaaaaaa-ttgtgtaatcatcattttatcaaaa-ta 18647508  T
Q  120 acatcttatatttcgaagataaaatttctatttgtagaatccttaag 166  Q
    |||||||||||||  ||||||||||||||||||||||| ||||||||    
T  18647507 acatcttatatttttaagataaaatttctatttgtagactccttaag 18647461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 195
Target Start/End: Original strand, 3137370 - 3137542
Alignment:
Q  22 ggagaatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagtaac 121  Q
    |||||||| |||||||||  ||||| |||||||||| |||||||||||||  || | |   | || ||||||||||||| | |  |||||||||||||||    
T  3137370 ggagaatgctaaccagtgccctaagaacattggttaggcatccaaaacaaataagtttatatgaa-aaagttgtgtaataattacttgatcaaaagtaac 3137468  T
Q  122 atcttatatttcgaagataaaatttctatttgtagaatccttaagcaatgctttgagggcgctggttagcaaga 195  Q
    |||||| ||||  |||| ||||||||||||| |  | | ||||| || |||  ||||||| |||||||||||||    
T  3137469 atcttacattttcaagacaaaatttctatttctgaatttcttaaccattgccctgagggcactggttagcaaga 3137542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 170
Target Start/End: Complemental strand, 17720322 - 17720174
Alignment:
Q  22 ggagaatgttaaccagtgttctaaggacattggtta--agcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagta 119  Q
    ||||||||||||||||||  | |||| |||||||||  |||||||||||||| ||| | ||| | || ||||||||||||||| |   ||||||||| ||    
T  17720322 ggagaatgttaaccagtgccc-aagggcattggttataagcatccaaaacaaacaagttttcatgaa-aaagttgtgtaatcattacatgatcaaaaata 17720225  T
Q  120 acatcttatatttcgaagataaaatttctatttgtagaatccttaagcaat 170  Q
    |||||||||||||  |||| || |||||||||| |||| || |||| ||||    
T  17720224 acatcttatattttcaagaaaatatttctatttatagattctttaaccaat 17720174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 165
Target Start/End: Complemental strand, 35901531 - 35901417
Alignment:
Q  50 attggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttcta 149  Q
    ||||||||||||||||||||||| || | ||  | || ||||||||| ||||| | ||| || ||||||||||||||| ||||  || | ||||||||||    
T  35901531 attggttaagcatccaaaacaagtaagtttttatgaa-aaagttgtgcaatcattatttaattaaaagtaacatcttacattttcaaaacaaaatttcta 35901433  T
Q  150 tttgtagaatccttaa 165  Q
    |||||||| |||||||    
T  35901432 tttgtagattccttaa 35901417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 50 - 170
Target Start/End: Complemental strand, 2768680 - 2768557
Alignment:
Q  50 attggttaagcatccaaaacaagcaaatgttctt---aaagaaagttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaattt 146  Q
    |||||||||| ||| ||||||||||| | ||| |   ||| ||| ||||| ||||| | ||| || |||| |||||| ||||||||| |||| |||||||    
T  2768680 attggttaagtatctaaaacaagcaagttttcatggaaaaaaaaattgtgcaatcattatttaattaaaactaacattttatatttccaagacaaaattt 2768581  T
Q  147 ctatttgtagaatccttaagcaat 170  Q
     |||||||||||||||||| ||||    
T  2768580 ttatttgtagaatccttaaccaat 2768557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 133
Target Start/End: Complemental strand, 27507088 - 27506979
Alignment:
Q  23 gagaatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagtaaca 122  Q
    ||||||| ||||| |||  | ||||||| |||||| ||||| |||||||| |||| ||| | || ||||||||||||| | | ||| ||||||||||| |    
T  27507088 gagaatgataacctgtgccccaaggacaatggttacgcatctaaaacaagtaaattttcatgaa-aaagttgtgtaattattattttatcaaaagtaata 27506990  T
Q  123 tcttatatttc 133  Q
    |||||||||||    
T  27506989 tcttatatttc 27506979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 107 - 152
Target Start/End: Original strand, 12201846 - 12201891
Alignment:
Q  107 ttgatcaaaagtaacatcttatatttcgaagataaaatttctattt 152  Q
    |||||||||||||||| |||||||||| |||| |||||||||||||    
T  12201846 ttgatcaaaagtaacagcttatatttccaagacaaaatttctattt 12201891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 107 - 152
Target Start/End: Original strand, 12446274 - 12446319
Alignment:
Q  107 ttgatcaaaagtaacatcttatatttcgaagataaaatttctattt 152  Q
    |||||||||||||||| |||||||||| |||| |||||||||||||    
T  12446274 ttgatcaaaagtaacagcttatatttccaagacaaaatttctattt 12446319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 165
Target Start/End: Original strand, 600341 - 600484
Alignment:
Q  21 aggagaatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagtaa 120  Q
    |||||||| |||||||||| || |||  || ||||||| |||| |||||||  || | ||| | || ||||||||| ||||| |  || |||||||||||    
T  600341 aggagaatattaaccagtgctccaagtgcaatggttaaacatctaaaacaaataagttttcatgaa-aaagttgtgcaatcattactttatcaaaagtaa 600439  T
Q  121 catcttatatttcgaagataaaatttctatttgtagaatccttaa 165  Q
    ||||||||||||| |||  ||||  | |||||||||| |||||||    
T  600440 catcttatatttccaagccaaaaaatttatttgtagattccttaa 600484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 37561558 - 37561486
Alignment:
Q  107 ttgatcaaaagtaacatcttatatttcgaagataaaatttctatttgtagaatccttaagcaatgctttgagg 179  Q
    |||||||||||||| |||||||||||  || ||||||||||||||| || | || |||| |||| ||||||||    
T  37561558 ttgatcaaaagtaaaatcttatattttcaaaataaaatttctatttataaattctttaaccaatactttgagg 37561486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 505
Target Start/End: Original strand, 17823932 - 17823967
Alignment:
Q  470 tttcatccaacttaattacttcactaactacaatta 505  Q
    ||||||||||||||| ||||||||||||||||||||    
T  17823932 tttcatccaacttaactacttcactaactacaatta 17823967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 505
Target Start/End: Complemental strand, 22771940 - 22771905
Alignment:
Q  470 tttcatccaacttaattacttcactaactacaatta 505  Q
    ||||||||||| ||||||||||||||||||||||||    
T  22771940 tttcatccaacataattacttcactaactacaatta 22771905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 107 - 165
Target Start/End: Original strand, 33621420 - 33621478
Alignment:
Q  107 ttgatcaaaagtaacatcttatatttcgaagataaaatttctatttgtagaatccttaa 165  Q
    |||||||||||||| || ||||||||  |||| ||||||| |||||||||| |||||||    
T  33621420 ttgatcaaaagtaaaattttatatttttaagacaaaatttttatttgtagattccttaa 33621478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 157
Target Start/End: Complemental strand, 3347589 - 3347520
Alignment:
Q  88 aaagttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttctatttgtaga 157  Q
    ||||||||||||| | |  || || ||||||||||||||||||||  |||| ||||||| ||||||||||    
T  3347589 aaagttgtgtaattattactttattaaaagtaacatcttatattttcaagacaaaatttttatttgtaga 3347520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 18200755 - 18200690
Alignment:
Q  92 ttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttctatttgtaga 157  Q
    ||||||||||| |  || |||||||||||||| ||||||||  |||| ||||||| ||||||||||    
T  18200755 ttgtgtaatcattacttaatcaaaagtaacatgttatatttttaagacaaaatttttatttgtaga 18200690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 27162809 - 27162858
Alignment:
Q  26 aatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaa 75  Q
    |||| |||| |||| || || |||||||||||||||||||||||||||||    
T  27162809 aatgctaactagtgatccaaagacattggttaagcatccaaaacaagcaa 27162858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 88 - 153
Target Start/End: Original strand, 547097 - 547166
Alignment:
Q  88 aaagttgtgtaatcactgtttgatcaaaagtaacat----cttatatttcgaagataaaatttctatttg 153  Q
    ||||||||||||| | | ||||||||||| ||||||    |||||||||  |||||||||||||||||||    
T  547097 aaagttgtgtaattattatttgatcaaaaataacatttatcttatattttcaagataaaatttctatttg 547166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 6e-29; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 18 - 171
Target Start/End: Original strand, 18717816 - 18717968
Alignment:
Q  18 attaggagaatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaag 117  Q
    |||||||||||| |||| ||||| | || || ||| |||||||||||||||||| ||||| ||| | || ||||||||||||||| |  |||||||||||    
T  18717816 attaggagaatgctaacaagtgtcccaaagatattagttaagcatccaaaacaaacaaattttcatgaa-aaagttgtgtaatcattacttgatcaaaag 18717914  T
Q  118 taacatcttatatttcgaagataaaatttctatttgtagaatccttaagcaatg 171  Q
    |||||||||||||||  || |||||||||||||||||| | ||||||| |||||    
T  18717915 taacatcttatatttttaaaataaaatttctatttgtaaattccttaaccaatg 18717968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 21 - 165
Target Start/End: Complemental strand, 3689761 - 3689620
Alignment:
Q  21 aggagaatgttaaccagtgttctaaggacattggttaagcatccaaaacaagca-aatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagta 119  Q
    ||||||||| |||||||||  | |||| ||||||||||||| |||||||||||| ||| || | | |  ||||| |||||||| |    |||||||||||    
T  3689761 aggagaatgctaaccagtgccccaagggcattggttaagcagccaaaacaagcacaattttatgata--aagttatgtaatcattac--gatcaaaagta 3689666  T
Q  120 acatcttatatttcgaagataaaatttctatttgtagaatccttaa 165  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  3689665 acatcttatatttcaaagataaaatttctatttgtagaatccttaa 3689620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 23453312 - 23453457
Alignment:
Q  20 taggagaatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagta 119  Q
    |||||||||||| | |||||   ||||  ||||||||||| ||||||||||||||| | ||  |  | ||||||||||||||  | ||||||||||||||    
T  23453312 taggagaatgttgatcagtgccttaagcgcattggttaagtatccaaaacaagcaagtttttatggaaaaagttgtgtaatctttatttgatcaaaagta 23453411  T
Q  120 acatcttatatttcgaagataaaatttctatttgtagaatccttaa 165  Q
    |||||||||||||  |||| ||||||| |||||||||| |||||||    
T  23453412 acatcttatattttcaagacaaaatttttatttgtagattccttaa 23453457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 14 - 155
Target Start/End: Original strand, 41436287 - 41436427
Alignment:
Q  14 ttaaattaggagaatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatca 113  Q
    |||||| ||||||||||||| |||||  | || | || ||||||||||||||||||||| || | ||| | || ||||||||||||||| | ||| ||||    
T  41436287 ttaaataaggagaatgttaatcagtgccccaaaggcaatggttaagcatccaaaacaagtaagttttcatgaa-aaagttgtgtaatcattattttatca 41436385  T
Q  114 aaagtaacatcttatatttcgaagataaaatttctatttgta 155  Q
    ||| |||||||||||| ||| |||||||||||||||| ||||    
T  41436386 aaaataacatcttatacttctaagataaaatttctatatgta 41436427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 195
Target Start/End: Complemental strand, 43080454 - 43080277
Alignment:
Q  16 aaattaggagaatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaa 115  Q
    |||| |||||||||||||||||||  || |||| |||||||||||||||||||||| ||||| ||  | || ||| ||||||||||| |  ||  |||||    
T  43080454 aaataaggagaatgttaaccagtgccctgaggatattggttaagcatccaaaacaatcaaatttttatgaa-aaaattgtgtaatca-taattagtcaaa 43080357  T
Q  116 agtaacatcttatatttcgaagataaaatttctatttgtagaatccttaagcaatgctttgagggcgctggttagcaaga 195  Q
    ||||||||||||| |||| |||| | | ||||||||||| |||||||||| || ||  |||||||  || ||||||||||    
T  43080356 agtaacatcttatgtttccaagacacattttctatttgtggaatccttaaccattggcttgaggggacttgttagcaaga 43080277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 21 - 165
Target Start/End: Complemental strand, 40574287 - 40574144
Alignment:
Q  21 aggagaatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagtaa 120  Q
    ||||||||| |||||||||  | |||| || ||||||||||||||||||||| | || ||| | || ||||||||||||| | |  |  ||||||||| |    
T  40574287 aggagaatgctaaccagtgccccaagggcaatggttaagcatccaaaacaagtacattttcatgaa-aaagttgtgtaattattactctatcaaaagtta 40574189  T
Q  121 catcttatatttcgaagataaaatttctatttgtagaatccttaa 165  Q
    ||| ||||||||| |||| |||||||||||||||||| |||||||    
T  40574188 cattttatatttccaagacaaaatttctatttgtagattccttaa 40574144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 31904368 - 31904216
Alignment:
Q  19 ttaggagaatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagt 118  Q
    |||| ||||||||||||| ||||| |||| |||||||||| |||| |||| ||| |||| || | ||| ||  ||||||||||| |  ||||| |||| |    
T  31904368 ttagaagaatgttaaccattgttccaagggcattggttaatcatctaaaataagtaaattttatgaaaaaa--ttgtgtaatcattacttgattaaaaat 31904271  T
Q  119 aacatcttatatttcgaagataaaatttctatttgtagaatccttaagcaatgct 173  Q
    ||||| ||||||||  |||||||||| | |||||||||||| ||||| |||||||    
T  31904270 aacattttatatttttaagataaaatatttatttgtagaattcttaatcaatgct 31904216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 116 - 195
Target Start/End: Original strand, 36087406 - 36087485
Alignment:
Q  116 agtaacatcttatatttcgaagataaaatttctatttgtagaatccttaagcaatgctttgagggcgctggttagcaaga 195  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||| || |||  ||||||| || ||||||||||    
T  36087406 agtaacatcttatatttctaagataaaatttctatttgtagattccttaaccattgccctgagggcactagttagcaaga 36087485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 13738541 - 13738396
Alignment:
Q  19 ttaggagaatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagt 118  Q
    |||||||||||  ||| ||||| ||||||| ||||||||||||||||||||||| || | ||  |||| ||| ||||||||||| |  || |||| ||||    
T  13738541 ttaggagaatggcaactagtgtcctaaggatattggttaagcatccaaaacaagtaagtttttataaa-aaaattgtgtaatcattactttatcagaagt 13738443  T
Q  119 aacatcttatatttcgaagataaaatttctatttgtagaatccttaa 165  Q
    ||||||||||||||  || | ||||||| ||||| |||| |||||||    
T  13738442 aacatcttatattttcaaaacaaaatttttatttatagattccttaa 13738396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 38024327 - 38024182
Alignment:
Q  18 attaggagaatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaag 117  Q
    |||| ||||||| |||| ||||||| || |||||| ||||| ||||||||||||||   | ||  | || |||||| |||||| | | |||||||||| |    
T  38024327 attaagagaatgctaactagtgttccaatgacatttgttaaacatccaaaacaagcccgttttaatgaa-aaagttatgtaattattatttgatcaaa-g 38024230  T
Q  118 taacatcttatatttcgaagataaaatttctatttgtagaatccttaa 165  Q
    ||| |||||||||||  |||||||||||||||||||||||||| ||||    
T  38024229 taatatcttatatttttaagataaaatttctatttgtagaatctttaa 38024182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 88 - 195
Target Start/End: Original strand, 40346743 - 40346850
Alignment:
Q  88 aaagttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttctatttgtagaatccttaagcaatgctttgagggcgctggt 187  Q
    ||||||||| ||||| | ||||||||||| |||||||||||||||  || | ||||||||||| |||||| ||||||| || | || |||| || | |||    
T  40346743 aaagttgtgcaatcattatttgatcaaaaataacatcttatattttcaatacaaaatttctatatgtagattccttaaccattactctgagagcaccggt 40346842  T
Q  188 tagcaaga 195  Q
    ||||||||    
T  40346843 tagcaaga 40346850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 110 - 195
Target Start/End: Original strand, 4557629 - 4557714
Alignment:
Q  110 atcaaaagtaacatcttatatttcgaagataaaatttctatttgtagaatccttaagcaatgctttgagggcgctggttagcaaga 195  Q
    ||||||| |||| ||||||||||| ||||||||||||||||||||||| || |||| || |||  ||||||| | | |||||||||    
T  4557629 atcaaaaataacttcttatatttccaagataaaatttctatttgtagattctttaaccattgccctgagggcaccgcttagcaaga 4557714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 132
Target Start/End: Original strand, 6315858 - 6315966
Alignment:
Q  23 gagaatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagtaaca 122  Q
    ||||||| ||||||||| || |||  |||||||||| ||||||||||||  |||| ||  |||| ||| ||||||||||| |  |||||||||| |||||    
T  6315858 gagaatgataaccagtgctccaagagcattggttaaacatccaaaacaaataaatttttgtaaa-aaaattgtgtaatcattacttgatcaaaaataaca 6315956  T
Q  123 tcttatattt 132  Q
    ||||||||||    
T  6315957 tcttatattt 6315966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 88 - 193
Target Start/End: Complemental strand, 1004852 - 1004748
Alignment:
Q  88 aaagttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttctatttgtagaatccttaagcaatgctttgagggcgctggt 187  Q
    |||||||||||||||   ||| ||||||||||| || ||||||||  |||| |||||||||||||||||| ||||||| || | |  ||||||  |||||    
T  1004852 aaagttgtgtaatcataattt-atcaaaagtaatattttatattttcaagacaaaatttctatttgtagattccttaaccattaccctgagggtactggt 1004754  T
Q  188 tagcaa 193  Q
    ||||||    
T  1004753 tagcaa 1004748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 4978827 - 4978767
Alignment:
Q  91 gttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttctatt 151  Q
    |||||||||||| |  ||||||||||||||||||||||||||  |||| |||| |||||||    
T  4978827 gttgtgtaatcattacttgatcaaaagtaacatcttatattttcaagacaaaacttctatt 4978767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 4996735 - 4996675
Alignment:
Q  91 gttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttctatt 151  Q
    |||||||||||| |  ||||||||||||||||||||||||||  |||| |||| |||||||    
T  4996735 gttgtgtaatcattacttgatcaaaagtaacatcttatattttcaagacaaaacttctatt 4996675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 165
Target Start/End: Original strand, 14952998 - 14953137
Alignment:
Q  26 aatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagtaacatct 125  Q
    |||| |||| |||| |||||| | ||||||||||||||||||| ||| |||| || | ||| ||| |||| |||||| |  | |||||||| |||||| |    
T  14952998 aatgctaacaagtgctctaagaatattggttaagcatccaaaataagtaaat-ttgtaaaaaaaaattgtctaatcattactcgatcaaaaataacattt 14953096  T
Q  126 tatatttcgaagataaaatttctattt-gtagaatccttaa 165  Q
    |||||||  |||| ||||||| ||||| ||||| |||||||    
T  14953097 tatatttttaagacaaaatttttatttcgtagattccttaa 14953137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 165
Target Start/End: Original strand, 8580569 - 8580624
Alignment:
Q  110 atcaaaagtaacatcttatatttcgaagataaaatttctatttgtagaatccttaa 165  Q
    |||||||||||||||||||||||| |||| || | |||||||| ||||||| ||||    
T  8580569 atcaaaagtaacatcttatatttccaagacaacaattctatttatagaatctttaa 8580624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 195
Target Start/End: Original strand, 8793880 - 8793951
Alignment:
Q  124 cttatatttcgaagataaaatttctatttgtagaatccttaagcaatgctttgagggcgctggttagcaaga 195  Q
    |||||||||| |||| ||| |||||||| ||||| ||||||| ||||||  | ||||| |||||||||||||    
T  8793880 cttatatttccaagacaaagtttctattagtagattccttaaccaatgcccttagggcactggttagcaaga 8793951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 34334462 - 34334520
Alignment:
Q  19 ttaggagaatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaaat 77  Q
    ||||||||||| |||||| |||||||||  || ||||||||||||| ||||||| ||||    
T  34334462 ttaggagaatgctaaccaatgttctaagagcaatggttaagcatcctaaacaagtaaat 34334520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 172
Target Start/End: Original strand, 7141156 - 7141233
Alignment:
Q  95 tgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttctatttgtagaatccttaagcaatgc 172  Q
    |||||||| | |||| |||||||||||| ||||| |||  |||| ||||||||||||  | |||||||||| ||||||    
T  7141156 tgtaatcattatttggtcaaaagtaacaccttatgttttcaagacaaaatttctattcattgaatccttaaccaatgc 7141233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 8580482 - 8580527
Alignment:
Q  22 ggagaatgttaaccagtgttctaaggacattggttaagcatccaaa 67  Q
    |||||||| |||||||||  |||||| |||||||||||||||||||    
T  8580482 ggagaatgctaaccagtgccctaagggcattggttaagcatccaaa 8580527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 32909461 - 32909416
Alignment:
Q  110 atcaaaagtaacatcttatatttcgaagataaaatttctatttgta 155  Q
    ||||||||||| |||||||||||| |||| ||||||| ||||||||    
T  32909461 atcaaaagtaatatcttatatttccaagacaaaatttatatttgta 32909416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 9e-28; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 22 - 193
Target Start/End: Complemental strand, 8001890 - 8001720
Alignment:
Q  22 ggagaatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagtaac 121  Q
    |||||||| |||| ||||  |||||| || |||||||||||| |||||||| |||| ||| |  | ||||||||||||||| |  || ||||||||||||    
T  8001890 ggagaatgctaacgagtgccctaaggccaatggttaagcatctaaaacaagtaaattttcatgta-aaagttgtgtaatcattactttatcaaaagtaac 8001792  T
Q  122 atcttatatttcgaagataaaatttctatttgtagaatccttaagcaatgctttgagggcgctggttagcaa 193  Q
    |||||||||||  |||||||||||||||||| |||| ||||||| || |||  ||||||| |||||||||||    
T  8001791 atcttatattttcaagataaaatttctatttctagattccttaaccattgccctgagggcactggttagcaa 8001720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 88 - 181
Target Start/End: Original strand, 48579931 - 48580024
Alignment:
Q  88 aaagttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttctatttgtagaatccttaagcaatgctttgagggc 181  Q
    ||||||||||||||| | |||||| |||| | |||||||||||||| |||| |||||||||||| ||||| |||| || ||||| |||||||||    
T  48579931 aaagttgtgtaatcattatttgattaaaaattacatcttatatttctaagacaaaatttctattagtagattcctcaaccaatggtttgagggc 48580024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 52 - 155
Target Start/End: Original strand, 26829492 - 26829594
Alignment:
Q  52 tggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttctatt 151  Q
    |||||||||||| |||| ||| |||| ||| | || ||||||||||||||| |  || |||||||||||||||||||||||| |||| |||||||||| |    
T  26829492 tggttaagcatctaaaataagtaaattttcatgaa-aaagttgtgtaatcattactttatcaaaagtaacatcttatatttccaagacaaaatttctaat 26829590  T
Q  152 tgta 155  Q
    ||||    
T  26829591 tgta 26829594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 44 - 165
Target Start/End: Original strand, 32187046 - 32187165
Alignment:
Q  44 aaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaa 143  Q
    |||||||||||||||| || ||||||||| |||| || || ||  |||||||| ||| | | | |||||||||||||||||||||||||  |||| ||||    
T  32187046 aaggacattggttaagaattcaaaacaagtaaattttattgaa--aagttgtgcaattattatctgatcaaaagtaacatcttatattttcaagacaaaa 32187143  T
Q  144 tttctatttgtagaatccttaa 165  Q
    ||||||||| || | |||||||    
T  32187144 tttctatttataaattccttaa 32187165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 88 - 164
Target Start/End: Complemental strand, 10226540 - 10226464
Alignment:
Q  88 aaagttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttctatttgtagaatcctta 164  Q
    ||||||||||||||| |  || ||||||| |||||||||||||||  |||| |||||||||||||||||| ||||||    
T  10226540 aaagttgtgtaatcattactttatcaaaattaacatcttatattttcaagacaaaatttctatttgtagattcctta 10226464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 165
Target Start/End: Complemental strand, 46296010 - 46295872
Alignment:
Q  26 aatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagtaacatct 125  Q
    ||||||||||| ||||  ||||  ||| ||||||||||||||||||  || | ||  | || |||||||||| || | |  ||||||||||||||||| |    
T  46296010 aatgttaaccaatgtttcaagggtatttgttaagcatccaaaacaaataagtttttatgaa-aaagttgtgtcatgattacttgatcaaaagtaacattt 46295912  T
Q  126 tatatttcgaagataaaatttctatttgtagaatccttaa 165  Q
    |||||||  |||||||||||| |||||||||| |||||||    
T  46295911 tatattttcaagataaaatttttatttgtagattccttaa 46295872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 165
Target Start/End: Original strand, 27688451 - 27688591
Alignment:
Q  25 gaatgttaaccagtgttctaaggacattggttaagcatccaaaa-caagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagtaacat 123  Q
    |||||||||||| ||  ||||||| | ||||||||||| ||||| |||| || | ||| | || ||| ||||||||||| |  || ||||||||||||||    
T  27688451 gaatgttaaccaatgcgctaaggataatggttaagcattcaaaaacaagtaagttttcatgaa-aaacttgtgtaatcattactttatcaaaagtaacat 27688549  T
Q  124 cttatatttcgaagataaaatttctatttgtagaatccttaa 165  Q
    |||||||||  || |||||||||  ||||||||| |||||||    
T  27688550 cttatattttcaatataaaattttaatttgtagattccttaa 27688591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 165
Target Start/End: Complemental strand, 13969242 - 13969100
Alignment:
Q  22 ggagaatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagtaac 121  Q
    ||||||||||||||||||  | |||   |||||||||||| |||||||||| || | ||  | || ||| ||||||||| | |  || || |||||||||    
T  13969242 ggagaatgttaaccagtgccccaagagtattggttaagcaaccaaaacaagtaagtttttatgaaaaaa-ttgtgtaataattacttaattaaaagtaac 13969144  T
Q  122 atcttatatttcgaagataaaatttctatttgtagaatccttaa 165  Q
    || ||||||||  |||| |||||||||||||||||| |||||||    
T  13969143 attttatattttcaagacaaaatttctatttgtagattccttaa 13969100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 95 - 152
Target Start/End: Original strand, 5069745 - 5069802
Alignment:
Q  95 tgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttctattt 152  Q
    |||||||| |||||  |||||||||||| |||||||||| |||| |||||||||||||    
T  5069745 tgtaatcattgtttagtcaaaagtaacaccttatatttccaagacaaaatttctattt 5069802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 153
Target Start/End: Original strand, 30109198 - 30109327
Alignment:
Q  24 agaatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagtaacat 123  Q
    |||||||||||| |||| | |||  ||||| |||| ||||||||||||| || | ||  |||| ||| |  |||||||| |||||||| |||| ||||||    
T  30109198 agaatgttaaccggtgtcccaagagcattgattaaacatccaaaacaagtaagttttaataaaaaaaatcatgtaatcattgtttgataaaaaataacat 30109297  T
Q  124 cttatatttcgaagataaaatttctatttg 153  Q
     ||||||||  || | ||||||||||||||    
T  30109298 attatattttcaaaacaaaatttctatttg 30109327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 92 - 165
Target Start/End: Complemental strand, 33148205 - 33148132
Alignment:
Q  92 ttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttctatttgtagaatccttaa 165  Q
    ||||||||||| |  ||||||||||||| ||||||||||||  |||| |||||||| ||||||| | |||||||    
T  33148205 ttgtgtaatcattacttgatcaaaagtagcatcttatatttttaagacaaaatttcaatttgtatattccttaa 33148132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 107 - 195
Target Start/End: Complemental strand, 17644830 - 17644742
Alignment:
Q  107 ttgatcaaaagtaacatcttatatttcgaagataaaatttctatttgtagaatccttaagcaatgctttgagggcgctggttagcaaga 195  Q
    |||| ||||||||||| |||| ||||| |||| |||||| ||||||||||| |||||||  | |||| ||||||| |  ||||||||||    
T  17644830 ttgagcaaaagtaacaacttaaatttccaagacaaaattactatttgtagattccttaactattgctctgagggcacaagttagcaaga 17644742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 165
Target Start/End: Complemental strand, 30941585 - 30941470
Alignment:
Q  49 cattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttct 148  Q
    ||||||||||||||||| |||||| || | | | | || ||||||||||||| | |||||||| |||| |||||| ||||||||| |||| ||||  | |    
T  30941585 cattggttaagcatccagaacaagtaagtttacatgaa-aaagttgtgtaattattgtttgataaaaaataacatgttatatttccaagacaaaaaatgt 30941487  T
Q  149 atttgtagaatccttaa 165  Q
    ||||| ||| |||||||    
T  30941486 atttgaagattccttaa 30941470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 152
Target Start/End: Complemental strand, 37597247 - 37597146
Alignment:
Q  50 attggttaagcatccaaaacaagcaaatgttctt-aaagaaagttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttct 148  Q
    |||||||||||||||||||||| ||||| ||||| ||||||  ||| ||||||| |  |||||||||| ||| |||||| ||||| |||| || |||| |    
T  37597247 attggttaagcatccaaaacaaacaaattttcttgaaagaa--ttgcgtaatcattacttgatcaaaaataaaatcttacatttccaagacaatattttt 37597150  T
Q  149 attt 152  Q
    ||||    
T  37597149 attt 37597146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 505
Target Start/End: Complemental strand, 25089193 - 25089158
Alignment:
Q  470 tttcatccaacttaattacttcactaactacaatta 505  Q
    ||||||||||||||| ||||||||||||||||||||    
T  25089193 tttcatccaacttaactacttcactaactacaatta 25089158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 3529434 - 3529488
Alignment:
Q  116 agtaacatcttatatttcgaagataaaatttctatttgtagaatccttaagcaat 170  Q
    |||||||||||||||||  |||||||||||||||||| || | ||||||| ||||    
T  3529434 agtaacatcttatattttcaagataaaatttctatttatatattccttaaccaat 3529488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 12527561 - 12527607
Alignment:
Q  22 ggagaatgttaaccagtgttctaaggacattggttaagcatccaaaa 68  Q
    |||||||| |||| ||| |||||||| ||||||||||||||||||||    
T  12527561 ggagaatgataactagtattctaagggcattggttaagcatccaaaa 12527607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 471 - 505
Target Start/End: Original strand, 26093406 - 26093440
Alignment:
Q  471 ttcatccaacttaattacttcactaactacaatta 505  Q
    |||||| ||||||||||||||||||||||||||||    
T  26093406 ttcatctaacttaattacttcactaactacaatta 26093440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 37540299 - 37540348
Alignment:
Q  22 ggagaatgttaaccagtgttctaaggacattggttaagcatccaaaacaa 71  Q
    ||||||||||||||| ||| | ||||||||||||||| ||| ||||||||    
T  37540299 ggagaatgttaaccaatgtcccaaggacattggttaaccattcaaaacaa 37540348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 52860807 - 52860908
Alignment:
Q  19 ttaggagaatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagt 118  Q
    ||||||||||||||| || ||  |||| |||| |||||||||||| |||| ||| |||| ||  |||| |||||| |||||||| |  || |||||||||    
T  52860807 ttaggagaatgttaatcactgccctaaagacaatggttaagcatctaaaataagtaaattttaataaaaaaagttttgtaatcattactttatcaaaagt 52860906  T
Q  119 aa 120  Q
    ||    
T  52860907 aa 52860908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 22 - 195
Target Start/End: Complemental strand, 42437857 - 42437687
Alignment:
Q  22 ggagaatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagtaac 121  Q
    |||||||| |||||||||  | |||| |||||||||||||||||||||| |||||  ||  | || |||||| |||||||| |    |||||||||||||    
T  42437857 ggagaatgctaaccagtgccccaagggcattggttaagcatccaaaacacgcaaaattttatgaa-aaagttatgtaatcattac--gatcaaaagtaac 42437761  T
Q  122 atcttatatttcgaagataaaatttctatttgtagaatccttaagcaatgctttgagggcgctggttagcaaga 195  Q
    |||||||| ||| ||||||||||||||||||||||||||||||| || |||  ||||||| ||||||| |||||    
T  42437760 atcttataattccaagataaaatttctatttgtagaatccttaaccattgccctgagggcactggttatcaaga 42437687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 50 - 193
Target Start/End: Complemental strand, 6785910 - 6785767
Alignment:
Q  50 attggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttcta 149  Q
    ||||||||| |||| ||||||||||| | ||| | || |||| |||||||||| |  ||||||||||||||||| ||||||||  |||| |||| |||||    
T  6785910 attggttaaacatcaaaaacaagcaagttttcatgaaaaaagatgtgtaatcattacttgatcaaaagtaacattttatattttcaagacaaaaattcta 6785811  T
Q  150 tttgtagaatccttaagcaatgctttgagggcgctggttagcaa 193  Q
    |||||||||||||||| || |||  ||||||| |||||||||||    
T  6785810 tttgtagaatccttaaccattgccctgagggcactggttagcaa 6785767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 15 - 152
Target Start/End: Original strand, 48338776 - 48338912
Alignment:
Q  15 taaattaggagaatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaa 114  Q
    ||||| ||||||||| |||| |||| ||||||| || ||||||||||||||||||||| || | ||  |||| ||||||||||||| | |  || |||||    
T  48338776 taaataaggagaatgctaactagtgctctaagggcaatggttaagcatccaaaacaagtaagtttttataaa-aaagttgtgtaataattactttatcaa 48338874  T
Q  115 aagtaacatcttatatttcgaagataaaatttctattt 152  Q
    || |||||||||||||||| ||||||||||||||||||    
T  48338875 aaataacatcttatatttccaagataaaatttctattt 48338912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 36 - 172
Target Start/End: Complemental strand, 11676865 - 11676730
Alignment:
Q  36 agtgttctaaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagtaacatcttatatttcga 135  Q
    |||||||||||| |||||||||| |||||||||||||||| | |||   || ||| |||||| |||| | |||||||||||||||| |||| |||||  |    
T  11676865 agtgttctaagggcattggttaaacatccaaaacaagcaagttttcaagaaaaaa-ttgtgttatcattatttgatcaaaagtaacgtcttttattttca 11676767  T
Q  136 agataaaatttctatttgtagaatccttaagcaatgc 172  Q
    ||| ||||||| |||||||||| ||||||| ||||||    
T  11676766 agacaaaatttatatttgtagattccttaatcaatgc 11676730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 88 - 165
Target Start/End: Original strand, 29032447 - 29032524
Alignment:
Q  88 aaagttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttctatttgtagaatccttaa 165  Q
    ||||||||||||||| |  ||||||||||||||||||||||||||  |||| ||||||||| ||||||||||||||||    
T  29032447 aaagttgtgtaatcattacttgatcaaaagtaacatcttatatttttaagacaaaatttctgtttgtagaatccttaa 29032524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 186
Target Start/End: Complemental strand, 28709681 - 28709546
Alignment:
Q  50 attggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttcta 149  Q
    ||||||||||||| ||||| ||| || | ||||  || |||||||| |||||| | |||||||||||||||||| ||||||||  |||||||||||||||    
T  28709681 attggttaagcattcaaaataagtaagt-ttctataaaaaagttgtataatcattatttgatcaaaagtaacattttatattttcaagataaaatttcta 28709583  T
Q  150 tttgtagaatccttaagcaatgctttgagggcgctgg 186  Q
    ||| |||| || |||| || |||  ||||||| ||||    
T  28709582 tttatagattctttaaccattgccctgagggcactgg 28709546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 155
Target Start/End: Original strand, 49261749 - 49261882
Alignment:
Q  21 aggagaatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagtaa 120  Q
    |||| |||||||||||||| || |||  || ||||||||||||||||||||| | || ||| | || ||| ||||||||| | |  |  |||||||||||    
T  49261749 aggataatgttaaccagtgctccaagagcaatggttaagcatccaaaacaagtacattttcatgaaaaaa-ttgtgtaattattactctatcaaaagtaa 49261847  T
Q  121 catcttatatttcgaagataaaatttctatttgta 155  Q
    ||||||||||||  |||| ||||||||||||||||    
T  49261848 catcttatatttacaagacaaaatttctatttgta 49261882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 88 - 165
Target Start/End: Complemental strand, 635783 - 635706
Alignment:
Q  88 aaagttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttctatttgtagaatccttaa 165  Q
    ||||||||||||||| | ||| ||||||||||||||||||| | |  |||| |||||||||||||||||| |||||||    
T  635783 aaagttgtgtaatcattatttaatcaaaagtaacatcttatttattcaagacaaaatttctatttgtagattccttaa 635706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 92 - 157
Target Start/End: Original strand, 44698257 - 44698322
Alignment:
Q  92 ttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttctatttgtaga 157  Q
    ||||||||||| | ||| |||||||||||||||||||||||  |||| ||||||||||||||||||    
T  44698257 ttgtgtaatcattattttatcaaaagtaacatcttatattttcaagacaaaatttctatttgtaga 44698322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 24 - 153
Target Start/End: Original strand, 8326110 - 8326237
Alignment:
Q  24 agaatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagtaacat 123  Q
    ||||||||||||| || ||||| ||||||| ||||| ||| |||||||  ||  ||| |||   ||||| ||||||||| || |||||||||||||||||    
T  8326110 agaatgttaaccaatgctctaaagacattgattaagtatctaaaacaaataa--gtttttatgaaaagtggtgtaatcattgcttgatcaaaagtaacat 8326207  T
Q  124 cttatatttcgaagataaaatttctatttg 153  Q
     ||||||||  || | ||||||||||||||    
T  8326208 attatatttttaaaacaaaatttctatttg 8326237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 21 - 155
Target Start/End: Original strand, 49543174 - 49543307
Alignment:
Q  21 aggagaatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagtaa 120  Q
    |||||||||||||  ||||| ||||||||||||||||||||| |||||| || |||| ||| | || |||| |||||||| | |  || ||  ||| | |    
T  49543174 aggagaatgttaattagtgtcctaaggacattggttaagcattcaaaacgagtaaattttcatgaaaaaag-tgtgtaataattacttaatataaaatga 49543272  T
Q  121 catcttatatttcgaagataaaatttctatttgta 155  Q
     |||||||||||  |||||||||||||||||||||    
T  49543273 tatcttatattttaaagataaaatttctatttgta 49543307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 88 - 157
Target Start/End: Original strand, 55446767 - 55446836
Alignment:
Q  88 aaagttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttctatttgtaga 157  Q
    ||||||||||||||| |  || || ||||||||||||||||||||| |||| ||||||| ||||||||||    
T  55446767 aaagttgtgtaatcattactttattaaaagtaacatcttatatttccaagacaaaatttttatttgtaga 55446836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 27639554 - 27639594
Alignment:
Q  111 tcaaaagtaacatcttatatttcgaagataaaatttctatt 151  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  27639554 tcaaaagtaatatcttatatttcgaagataaaatttctatt 27639594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 110 - 165
Target Start/End: Original strand, 38359104 - 38359159
Alignment:
Q  110 atcaaaagtaacatcttatatttcgaagataaaatttctatttgtagaatccttaa 165  Q
    ||||||| |||||||||||||||| |||||||||||| ||||| |||| |||||||    
T  38359104 atcaaaattaacatcttatatttctaagataaaatttttatttatagattccttaa 38359159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 165
Target Start/End: Complemental strand, 26613180 - 26613066
Alignment:
Q  51 ttggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttctat 150  Q
    |||||||||||||||||||||| || | ||| |||| |||||| |||||| | |  ||||| |||| |||||| |||||||||  ||| ||||  | |||    
T  26613180 ttggttaagcatccaaaacaagtaagttttcataaaaaaagttatgtaattattacttgattaaaaataacattttatatttctgagacaaaacatttat 26613081  T
Q  151 ttgtagaatccttaa 165  Q
    ||||||| |||||||    
T  26613080 ttgtagattccttaa 26613066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 153
Target Start/End: Original strand, 50958863 - 50958960
Alignment:
Q  55 ttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttctatttg 153  Q
    |||||||||||||||||| || | ||  | || ||| ||||||||||| |  |||||||||| |||||| ||||||||| |||| ||||||||||||||    
T  50958863 ttaagcatccaaaacaagtaagtttttatgaaaaaa-ttgtgtaatcatttcttgatcaaaaataacatgttatatttccaagacaaaatttctatttg 50958960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 154
Target Start/End: Original strand, 3215095 - 3215142
Alignment:
Q  107 ttgatcaaaagtaacatcttatatttcgaagataaaatttctatttgt 154  Q
    ||||||||||| ||||||||||||||  |||||||| |||||||||||    
T  3215095 ttgatcaaaagcaacatcttatattttcaagataaagtttctatttgt 3215142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 165
Target Start/End: Original strand, 4020155 - 4020210
Alignment:
Q  110 atcaaaagtaacatcttatatttcgaagataaaatttctatttgtagaatccttaa 165  Q
    ||||||| |||||| ||||||||  |||| |||||||||||||||||| |||||||    
T  4020155 atcaaaattaacattttatattttcaagacaaaatttctatttgtagattccttaa 4020210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 505
Target Start/End: Complemental strand, 10366753 - 10366718
Alignment:
Q  470 tttcatccaacttaattacttcactaactacaatta 505  Q
    ||||||||||||||| ||||||||||||||||||||    
T  10366753 tttcatccaacttaactacttcactaactacaatta 10366718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 505
Target Start/End: Original strand, 12904875 - 12904910
Alignment:
Q  470 tttcatccaacttaattacttcactaactacaatta 505  Q
    |||||||||||||||||||| |||||||||||||||    
T  12904875 tttcatccaacttaattactccactaactacaatta 12904910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 505
Target Start/End: Complemental strand, 29024069 - 29024034
Alignment:
Q  470 tttcatccaacttaattacttcactaactacaatta 505  Q
    |||||||||||||||||||| |||||||||||||||    
T  29024069 tttcatccaacttaattactccactaactacaatta 29024034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 34146052 - 34145920
Alignment:
Q  17 aattaggagaatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaa 116  Q
    ||||| ||||||||||||| |||||| |||  ||||| ||||||||||||||| || |||| || | ||   || |||| |||| | |  ||||||||||    
T  34146052 aattaagagaatgttaaccggtgttccaagagcattgattaagcatccaaaactagtaaattttatgaa--caaattgtataattattacttgatcaaaa 34145955  T
Q  117 gtaacatcttatatttcgaagataaaatttctatt 151  Q
     |||||||||||||||| || | ||||||| ||||    
T  34145954 ataacatcttatatttccaacacaaaatttatatt 34145920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 380 - 410
Target Start/End: Original strand, 50173327 - 50173357
Alignment:
Q  380 tgctaacaagtgcctttagggcactagttaa 410  Q
    |||||||||||||||||||||||||||||||    
T  50173327 tgctaacaagtgcctttagggcactagttaa 50173357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 195
Target Start/End: Complemental strand, 31672938 - 31672865
Alignment:
Q  122 atcttatatttcgaagataaaatttctatttgtagaatccttaagcaatgctttgagggcgctggttagcaaga 195  Q
    |||||||||||| |||| |||||||||||  |||||||| |||| |||||  |||| |||  ||||||||||||    
T  31672938 atcttatatttctaagacaaaatttctatccgtagaatctttaaccaatgtcttgaaggcattggttagcaaga 31672865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 12109710 - 12109762
Alignment:
Q  113 aaaagtaacatcttatatttcgaagataaaatttctatttgtagaatccttaa 165  Q
    |||||||| |||||||||||  || | | ||||||||||||||||||||||||    
T  12109710 aaaagtaatatcttatattttcaaaacataatttctatttgtagaatccttaa 12109762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 195
Target Start/End: Original strand, 12373070 - 12373130
Alignment:
Q  135 aagataaaatttctatttgtagaatccttaagcaatgctttgagggcgctggttagcaaga 195  Q
    |||||||||||| |||||||||| ||||||| || |||  ||||||  |||||||||||||    
T  12373070 aagataaaatttatatttgtagattccttaaccattgccctgagggaactggttagcaaga 12373130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 469 - 505
Target Start/End: Original strand, 37804795 - 37804831
Alignment:
Q  469 gtttcatccaacttaattacttcactaactacaatta 505  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  37804795 gtttcattcaacttaactacttcactaactacaatta 37804831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 170
Target Start/End: Complemental strand, 30840744 - 30840594
Alignment:
Q  18 attaggagaatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaag 117  Q
    ||||||| ||||||||||||||| |||| | ||||| |||||||||||||||||| || | |||  ||| ||||||||||||||| |  |||||||||||    
T  30840744 attaggaaaatgttaaccagtgtcctaaaggcattgattaagcatccaaaacaagtaagttttc--aaaaaaagttgtgtaatcattacttgatcaaaag 30840647  T
Q  118 taacatcttatatttcgaagataaaatttctatttgtagaatccttaagcaat 170  Q
    |||||||||||||||  |||| ||| ||||| || ||||| ||||||| ||||    
T  30840646 taacatcttatattttcaagacaaattttctgttagtagattccttaaccaat 30840594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 44 - 164
Target Start/End: Original strand, 27544581 - 27544700
Alignment:
Q  44 aaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaa 143  Q
    |||| |||| ||||| ||||||||||||| |||| ||| | || ||||||||||||||| |   |||| |||| |||||||||||||||  |||||||||    
T  27544581 aagggcattagttaaacatccaaaacaagtaaattttcatgaa-aaagttgtgtaatcattacatgataaaaaataacatcttatattttcaagataaaa 27544679  T
Q  144 tttctatttgtagaatcctta 164  Q
    |||||||||||||| ||||||    
T  27544680 tttctatttgtagattcctta 27544700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 107 - 197
Target Start/End: Complemental strand, 30293882 - 30293792
Alignment:
Q  107 ttgatcaaaagtaacatcttatatttcgaagataaaatttctatttgtagaatccttaagcaatgctttgagggcgctggttagcaagatc 197  Q
    ||||||||||||||||||||||||||  |||| |||||||||||||||||| || |||| |||| || | ||||| ||||||||| |||||    
T  30293882 ttgatcaaaagtaacatcttatatttttaagacaaaatttctatttgtagattctttaaccaatactctaagggcactggttagcgagatc 30293792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 165
Target Start/End: Complemental strand, 27366116 - 27365972
Alignment:
Q  20 taggagaatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagta 119  Q
    |||||||||| |||||  ||| | |||| ||||||||||||||||||||||| ||  | ||| | || ||| ||| ||||||| | |||| || ||||||    
T  27366116 taggagaatgctaaccgatgtcccaagggcattggttaagcatccaaaacaaacatgttttcatgaaaaaa-ttgcgtaatcattatttggtctaaagta 27366018  T
Q  120 acatcttatatttcgaagataaaatttctatttgtagaatccttaa 165  Q
    | |||||||||||| ||||||||||||| |||| || |||| ||||    
T  27366017 atatcttatatttccaagataaaatttcaatttttaaaatctttaa 27365972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 88 - 157
Target Start/End: Original strand, 36482086 - 36482155
Alignment:
Q  88 aaagttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttctatttgtaga 157  Q
    |||||||||||| || | |||||||||||||||||||||||||||  || | ||||||||||||||||||    
T  36482086 aaagttgtgtaaacattatttgatcaaaagtaacatcttatattttcaaaacaaaatttctatttgtaga 36482155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 88 - 179
Target Start/End: Original strand, 22294019 - 22294110
Alignment:
Q  88 aaagttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttctatttgtagaatccttaagcaatgctttgagg 179  Q
    ||||||||| ||| | | |||||||||||  || |||||||||||| |||| |||||||||||||||||| ||||||| || |||| |||||    
T  22294019 aaagttgtgcaataattatttgatcaaaaccaatatcttatatttccaagacaaaatttctatttgtagattccttaaccattgctctgagg 22294110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 474
Target Start/End: Original strand, 8611778 - 8611822
Alignment:
Q  430 caattgataattttcatatataaaaagttgcttttttatgtttca 474  Q
    ||||||||||||||||| || ||||||||||||||| ||||||||    
T  8611778 caattgataattttcatgtagaaaaagttgctttttgatgtttca 8611822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 193
Target Start/End: Original strand, 11815951 - 11816051
Alignment:
Q  93 tgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttctatttgtagaatccttaagcaatgctttgagggcgctggttagca 192  Q
    |||||||||| |  || |||||||||||||||||||||||  |||| ||||||||||||| |||| || |||| || ||   |||| || ||||||||||    
T  11815951 tgtgtaatcattactttatcaaaagtaacatcttatattttcaagacaaaatttctatttttagattcattaaccattgtcctgagagcactggttagca 11816050  T
Q  193 a 193  Q
    |    
T  11816051 a 11816051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 179
Target Start/End: Original strand, 41645003 - 41645158
Alignment:
Q  21 aggagaatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagtaa 120  Q
    |||||||||||||||| ||  | || | ||||| ||||||||| |||| ||| |||| ||| |   |||||||||||||||| |  ||||| |||| |||    
T  41645003 aggagaatgttaaccattgcacaaaagtcattgcttaagcatctaaaataagtaaattttcat---gaaagttgtgtaatcattacttgataaaaaataa 41645099  T
Q  121 catcttatatttcgaagataaaatttctatttgtagaatccttaagcaatgctttgagg 179  Q
     |||||||||||   ||| ||||||| ||||| |||| || |||| ||||||| |||||    
T  41645100 tatcttatattttctagacaaaatttttatttatagattctttaaccaatgctctgagg 41645158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 505
Target Start/End: Complemental strand, 6315879 - 6315844
Alignment:
Q  470 tttcatccaacttaattacttcactaactacaatta 505  Q
    ||||||||||||||| ||||||||||||||||||||    
T  6315879 tttcatccaacttaactacttcactaactacaatta 6315844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 14976956 - 14977002
Alignment:
Q  106 tttgatcaaaagtaacatcttatatttcgaagataaaatttctattt 152  Q
    |||| |||||| ||| |||||||||||| ||||||||||||||||||    
T  14976956 tttggtcaaaaataatatcttatatttccaagataaaatttctattt 14977002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 151
Target Start/End: Complemental strand, 1920806 - 1920761
Alignment:
Q  106 tttgatcaaaagtaacatcttatatttcgaagataaaatttctatt 151  Q
    |||| |||||||||||| |||||||||| |||| ||||||||||||    
T  1920806 tttggtcaaaagtaacaccttatatttctaagacaaaatttctatt 1920761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 5471313 - 5471264
Alignment:
Q  22 ggagaatgttaaccagtgttctaaggacattggttaagcatccaaaacaa 71  Q
    ||||||||||||| ||||  | || |||||||||||||||||||||||||    
T  5471313 ggagaatgttaactagtgccccaatgacattggttaagcatccaaaacaa 5471264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 165
Target Start/End: Complemental strand, 14044758 - 14044683
Alignment:
Q  88 aaagttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttctatttgtagaatccttaa 165  Q
    ||||||||||||| | |  |||||||||||||| |||||||||||| |||| |||| || |||||||||| |||||||    
T  14044758 aaagttgtgtaataattacttgatcaaaagtaatatcttatatttc-aagaaaaaaatt-tatttgtagattccttaa 14044683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 380 - 416
Target Start/End: Original strand, 950624 - 950660
Alignment:
Q  380 tgctaacaagtgcctttagggcactagttaatgattc 416  Q
    |||||||||||||| |||||||||||||||| |||||    
T  950624 tgctaacaagtgcccttagggcactagttaaggattc 950660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 2089199 - 2089139
Alignment:
Q  83 taaagaaagttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaa 143  Q
    |||| ||| ||||||||| | | ||||||||||||||| |||||||||||| |||| ||||    
T  2089199 taaaaaaaattgtgtaataattatttgatcaaaagtaaaatcttatatttccaagacaaaa 2089139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 18242495 - 18242551
Alignment:
Q  109 gatcaaaagtaacatcttatatttcgaagataaaatttctatttgtagaatccttaa 165  Q
    ||||||||||  ||||||||||||  |||| |||||||||| ||||||| |||||||    
T  18242495 gatcaaaagtcgcatcttatattttcaagacaaaatttctacttgtagattccttaa 18242551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 9e-22; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 22 - 195
Target Start/End: Original strand, 19676965 - 19677137
Alignment:
Q  22 ggagaatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagtaac 121  Q
    |||||||| |||| ||||  | |||| |||||||||||||||| |||||||||| | ||  |  | |||| |||||||||| |  || ||||||||||||    
T  19676965 ggagaatgctaactagtgccccaagggcattggttaagcatcctaaacaagcaagttttggtgta-aaaggtgtgtaatcattacttaatcaaaagtaac 19677063  T
Q  122 atcttatatttcgaagataaaatttctatttgtagaatccttaagcaatgctttgagggcgctggttagcaaga 195  Q
    |||||||||||  |||| ||||||||||||||| || ||||||| ||||||  |||||||  ||||||||||||    
T  19677064 atcttatattttcaagacaaaatttctatttgtcgattccttaaccaatgccctgagggcattggttagcaaga 19677137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 22 - 155
Target Start/End: Original strand, 16979912 - 16980044
Alignment:
Q  22 ggagaatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagtaac 121  Q
    |||||||| ||||  ||| ||||||| |||||||||||||||||||||||| |||| ||  | || |||||||||| || | |  | |||||||||||||    
T  16979912 ggagaatgctaactggtgctctaagggcattggttaagcatccaaaacaagtaaatttttatgaa-aaagttgtgtgattattactcgatcaaaagtaac 16980010  T
Q  122 atcttatatttcgaagataaaatttctatttgta 155  Q
    |||||||||||  |||| |||||||||| |||||    
T  16980011 atcttatattttcaagacaaaatttctaattgta 16980044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 107 - 195
Target Start/End: Original strand, 18756917 - 18757005
Alignment:
Q  107 ttgatcaaaagtaacatcttatatttcgaagataaaatttctatttgtagaatccttaagcaatgctttgagggcgctggttagcaaga 195  Q
    ||||||||||||||||  || |||||  |||| |||||||||||||||||| ||||||| ||||||  ||||||| |||||||||||||    
T  18756917 ttgatcaaaagtaacacattttatttgcaagacaaaatttctatttgtagattccttaatcaatgccatgagggcactggttagcaaga 18757005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 50 - 172
Target Start/End: Original strand, 16685729 - 16685852
Alignment:
Q  50 attggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaa-agtaacatcttatatttcgaagataaaatttct 148  Q
    ||||||||||||||||||| ||| || | ||  |  | ||||||||||||||| |  ||||||||| |||||||||||||||||| |||| |||| ||||    
T  16685729 attggttaagcatccaaaataagtaagtttttatttaaaaagttgtgtaatcattacttgatcaaagagtaacatcttatatttcaaagacaaaacttct 16685828  T
Q  149 atttgtagaatccttaagcaatgc 172  Q
    ||| ||||| ||||||| ||||||    
T  16685829 attagtagattccttaaccaatgc 16685852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 50 - 172
Target Start/End: Original strand, 17659965 - 17660088
Alignment:
Q  50 attggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaa-agtaacatcttatatttcgaagataaaatttct 148  Q
    ||||||||||||||||||| ||| || | ||  |  | ||||||||||||||| |  ||||||||| |||||||||||||||||| |||| |||| ||||    
T  17659965 attggttaagcatccaaaataagtaagtttttatttaaaaagttgtgtaatcattacttgatcaaagagtaacatcttatatttcaaagacaaaacttct 17660064  T
Q  149 atttgtagaatccttaagcaatgc 172  Q
    ||| ||||| ||||||| ||||||    
T  17660065 attagtagattccttaaccaatgc 17660088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 21 - 157
Target Start/End: Complemental strand, 23142797 - 23142662
Alignment:
Q  21 aggagaatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagtaa 120  Q
    |||||||||||||| |||||   |||  |||||||||| ||||||||| ||| || | ||  | || ||||||||||||| | |  |||||||||| |||    
T  23142797 aggagaatgttaacgagtgtctcaagagcattggttaaacatccaaaataagtaagtttttatgaaaaaagttgtgtaataattacttgatcaaaaataa 23142698  T
Q  121 catcttatatttcgaagataaaatttctatttgtaga 157  Q
    ||||||||||||| || | ||||||||||||||||||    
T  23142697 catcttatatttccaa-acaaaatttctatttgtaga 23142662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 92 - 189
Target Start/End: Complemental strand, 8896672 - 8896575
Alignment:
Q  92 ttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttctatttgtagaatccttaagcaatgctttgagggcgctggtta 189  Q
    ||||||||||| |   |||||||||||||||||||||||||  |||| ||||||| |||||||||| || |||| || || | ||||||| |||||||    
T  8896672 ttgtgtaatcattacctgatcaaaagtaacatcttatatttttaagacaaaatttatatttgtagattctttaaacattgttgtgagggcactggtta 8896575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 146
Target Start/End: Complemental strand, 34993271 - 34993148
Alignment:
Q  22 ggagaatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagtaac 121  Q
    ||||||||||||||||||  |||||  || || ||||||||| ||| |||| || | ||| | || ||||||||||||| | | ||| ||||||||||||    
T  34993271 ggagaatgttaaccagtgccctaagagcaatgattaagcatctaaatcaagtaagttttcatgaa-aaagttgtgtaattattattttatcaaaagtaac 34993173  T
Q  122 atcttatatttcgaagataaaattt 146  Q
    |||||||||||  |||| |||||||    
T  34993172 atcttatatttttaagacaaaattt 34993148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 106 - 165
Target Start/End: Complemental strand, 1309784 - 1309725
Alignment:
Q  106 tttgatcaaaagtaacatcttatatttcgaagataaaatttctatttgtagaatccttaa 165  Q
    |||||| ||||||||| | ||||||||  ||||||||||||||||||||||| |||||||    
T  1309784 tttgataaaaagtaacgtattatatttttaagataaaatttctatttgtagattccttaa 1309725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 197
Target Start/End: Complemental strand, 31850819 - 31850717
Alignment:
Q  95 tgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttctatttgtagaatccttaagcaatgctttgagggcgctggttagcaag 194  Q
    |||||||| | ||| || ||||||||||||||||||||| |||| ||||||| ||||| | || |  |||| || |||| ||||||| | ||||||||||    
T  31850819 tgtaatcattattttattaaaagtaacatcttatatttctaagacaaaatttttatttatggattttttaaccattgctctgagggcaccggttagcaag 31850720  T
Q  195 atc 197  Q
    |||    
T  31850719 atc 31850717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 44 - 157
Target Start/End: Original strand, 37928292 - 37928404
Alignment:
Q  44 aaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaa 143  Q
    ||||||||||||||| ||||||||| ||| || | ||  |||| ||||||||||||| | |  || ||||||| |||||| ||||||||  |||||||||    
T  37928292 aaggacattggttaaacatccaaaataagtaagtttttataaa-aaagttgtgtaataattactttatcaaaaataacattttatattttcaagataaaa 37928390  T
Q  144 tttctatttgtaga 157  Q
    ||| ||||| ||||    
T  37928391 tttatatttataga 37928404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 92 - 152
Target Start/End: Complemental strand, 25530619 - 25530559
Alignment:
Q  92 ttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttctattt 152  Q
    ||||||||||| |  || |||||| ||||||| ||||||||| ||||||||||||||||||    
T  25530619 ttgtgtaatcattactttatcaaatgtaacattttatatttctaagataaaatttctattt 25530559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 88 - 178
Target Start/End: Original strand, 8746171 - 8746260
Alignment:
Q  88 aaagttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttctatttgtagaatccttaagcaatgctttgag 178  Q
    |||||||| |||||| | ||||||||||||||||||  |||||||  |||| ||||||| |||| ||||  ||||||| |||||| |||||    
T  8746171 aaagttgtataatcattatttgatcaaaagtaacattctatatttacaagacaaaatttttattagtag-ttccttaaccaatgccttgag 8746260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 113 - 151
Target Start/End: Complemental strand, 31487763 - 31487725
Alignment:
Q  113 aaaagtaacatcttatatttcgaagataaaatttctatt 151  Q
    |||| |||||||||||||||| |||||||||||||||||    
T  31487763 aaaaataacatcttatatttccaagataaaatttctatt 31487725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 504
Target Start/End: Complemental strand, 17828461 - 17828428
Alignment:
Q  471 ttcatccaacttaattacttcactaactacaatt 504  Q
    ||||||||||||||||||| ||||||||||||||    
T  17828461 ttcatccaacttaattactccactaactacaatt 17828428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 165
Target Start/End: Original strand, 21515054 - 21515131
Alignment:
Q  88 aaagttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttctatttgtagaatccttaa 165  Q
    |||| |||||||| | | |||||| |||||||||||||| |||||  | | |||||||||||||| |||| |||||||    
T  21515054 aaaggtgtgtaattattatttgattaaaagtaacatcttgtattttcatgttaaaatttctatttatagattccttaa 21515131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 31249568 - 31249617
Alignment:
Q  108 tgatcaaaagtaacatcttatatttcgaagataaaatttctatttgtaga 157  Q
    |||||||||||||||||||||||||  |||| ||||||| ||||| ||||    
T  31249568 tgatcaaaagtaacatcttatattttcaagacaaaatttatatttataga 31249617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 191
Target Start/End: Complemental strand, 34993146 - 34993073
Alignment:
Q  118 taacatcttatatttcgaagataaaatttctatttgtagaatccttaagcaatgctttgagggcgctggttagc 191  Q
    |||||||||||||||  |||| ||||||| |||||||||| ||||||| || |||  ||| || ||||||||||    
T  34993146 taacatcttatattttcaagacaaaatttatatttgtagattccttaaccattgccctgacggtgctggttagc 34993073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 41760485 - 41760436
Alignment:
Q  19 ttaggagaatgttaaccagtgttctaaggacattggttaagcatccaaaa 68  Q
    |||||||||||||||  ||||||  | |||||||||||||||||||||||    
T  41760485 ttaggagaatgttaaatagtgtttcatggacattggttaagcatccaaaa 41760436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 170
Target Start/End: Complemental strand, 18221042 - 18220982
Alignment:
Q  110 atcaaaagtaacatcttatatttcgaagataaaatttctatttgtagaatccttaagcaat 170  Q
    |||||| ||||||||||||||||| |||  |||| ||||||| ||||| ||||||| ||||    
T  18221042 atcaaatgtaacatcttatatttccaagtcaaaacttctattagtagattccttaaccaat 18220982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 22 - 165
Target Start/End: Original strand, 27284042 - 27284184
Alignment:
Q  22 ggagaatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagtaac 121  Q
    ||||||||||||| |||   | |||| |||||||||| ||||||||| ||  || | ||  |||| ||||||||| ||||| | ||||||||||||||||    
T  27284042 ggagaatgttaacgagtaccccaagggcattggttaaacatccaaaataaataagtttttataaa-aaagttgtgcaatcattatttgatcaaaagtaac 27284140  T
Q  122 atcttatatttcgaagataaaatttctatttgtagaatccttaa 165  Q
    |||||||||||| |||| ||||||||||| |||||| |||||||    
T  27284141 atcttatatttccaagacaaaatttctatatgtagattccttaa 27284184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 49 - 197
Target Start/End: Complemental strand, 2824932 - 2824784
Alignment:
Q  49 cattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttct 148  Q
    ||||| ||||||||| ||||||||||| | ||  | || || |||||||||||| |  ||||||||||||||||||||||||| | |||| |||| | ||    
T  2824932 cattgattaagcatctaaaacaagcaagtttttatgaa-aatgttgtgtaatcattacttgatcaaaagtaacatcttatattcccaagacaaaagtgct 2824834  T
Q  149 atttgtagaatccttaagc-aatgctttgagggcgctggttagcaagatc 197  Q
    ||||||||||||||||| | ||| |  |||||||  ||||||||||||||    
T  2824833 atttgtagaatccttaaccaaataccctgagggcaatggttagcaagatc 2824784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 92 - 192
Target Start/End: Complemental strand, 31861502 - 31861402
Alignment:
Q  92 ttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttctatttgtagaatccttaagcaatgctttgagggcgctggttagc 191  Q
    ||||||||||| |  ||||||||||||||||||||||||||| || ||||||||| ||| |||| | ||||||| |||| |  ||||||| |||||||||    
T  31861502 ttgtgtaatcattacttgatcaaaagtaacatcttatatttccaaaataaaatttttatatgtaaattccttaatcaataccctgagggcactggttagc 31861403  T
Q  192 a 192  Q
    |    
T  31861402 a 31861402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 12094924 - 12095100
Alignment:
Q  18 attaggagaatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaag 117  Q
    |||||||||||| |||||| || || ||| ||| || |||| ||||||||| ||| || | ||  | || ||||||||||||||| |  || ||||||||    
T  12094924 attaggagaatgctaaccaatgctcgaagaacaatgtttaaacatccaaaataagtaagtttttatgaa-aaagttgtgtaatcattactttatcaaaag 12095022  T
Q  118 taacatcttatatttcgaagataaaatttctatttgtagaatccttaagcaatgctttgagggcgctggttagcaaga 195  Q
    ||| |||||||||||  ||   |||||||||||||||||| |||||||  | |||   |||||| |||||||||||||    
T  12095023 taatatcttatattttcaatgcaaaatttctatttgtagattccttaactattgccccgagggcactggttagcaaga 12095100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 88 - 165
Target Start/End: Original strand, 13967880 - 13967957
Alignment:
Q  88 aaagttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttctatttgtagaatccttaa 165  Q
    |||||||| |||||| |  ||||| |||| |||||||||||||| | |||| |||||||||||||||||| |||||||    
T  13967880 aaagttgtataatcattacttgataaaaaataacatcttatattaccaagacaaaatttctatttgtagattccttaa 13967957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 165
Target Start/End: Complemental strand, 52837411 - 52837265
Alignment:
Q  21 aggagaatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaa---ag 117  Q
    ||||||||| || ||| | | |||||| |||||||||||||||||||||||| |||| ||  | || ||||||||||||| | |   ||||||||   ||    
T  52837411 aggagaatgctatccaatatcctaagggcattggttaagcatccaaaacaagaaaatttttatgaa-aaagttgtgtaataattacgtgatcaaaagtag 52837313  T
Q  118 taacatcttatatttcgaagataaaatttctatttgtagaatccttaa 165  Q
    |||||| |||||| || |||||||||||||||||| || | |||||||    
T  52837312 taacattttatatgtccaagataaaatttctatttataaattccttaa 52837265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 44190273 - 44190321
Alignment:
Q  107 ttgatcaaaagtaacatcttatatttcgaagataaaatttctatttgta 155  Q
    ||||||||||||||||||||||||||  |||||||||||| ||||||||    
T  44190273 ttgatcaaaagtaacatcttatattttcaagataaaatttatatttgta 44190321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 92 - 195
Target Start/End: Complemental strand, 12076502 - 12076399
Alignment:
Q  92 ttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttctatttgtagaatccttaagcaatgctttgagggcgctggttagc 191  Q
    |||||| |||| || |||||||||| |||||||||||||||  |||| ||||||| |||||| ||| ||||||| || | | |||||||  ||| |||||    
T  12076502 ttgtgtgatcattgcttgatcaaaattaacatcttatattttcaagacaaaatttttatttgaagattccttaaccattaccttgagggaactgattagc 12076403  T
Q  192 aaga 195  Q
    ||||    
T  12076402 aaga 12076399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 88 - 155
Target Start/End: Original strand, 28176811 - 28176877
Alignment:
Q  88 aaagttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttctatttgta 155  Q
    |||| |||||||||| | ||| ||||||| ||| |||||||||||| |||||||||||||||||||||    
T  28176811 aaagatgtgtaatcattattttatcaaaa-taatatcttatatttctaagataaaatttctatttgta 28176877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 186
Target Start/End: Original strand, 37183077 - 37183171
Alignment:
Q  92 ttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttctatttgtagaatccttaagcaatgctttgagggcgctgg 186  Q
    ||||||||||| |  |||||||||| |||||| ||||||||  ||||||| |||| ||||| || ||||||||| ||||||  ||||||| ||||    
T  37183077 ttgtgtaatcattacttgatcaaaaataacatattatatttataagataagatttttatttttataatccttaatcaatgccatgagggcactgg 37183171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 88 - 157
Target Start/End: Complemental strand, 2565489 - 2565420
Alignment:
Q  88 aaagttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttctatttgtaga 157  Q
    ||||||||||||||| |  ||||||||||||||||| |||| |||  |||||||||||| ||||| ||||    
T  2565489 aaagttgtgtaatcattacttgatcaaaagtaacattttatgttttcaagataaaatttatatttataga 2565420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 88 - 181
Target Start/End: Complemental strand, 7437907 - 7437814
Alignment:
Q  88 aaagttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttctatttgtagaatccttaagcaatgctttgagggc 181  Q
    |||||||||||||||    ||| ||||||||||||||||||||||| |||| | | ||| ||||||| ||||| |||| || ||| ||||||||    
T  7437907 aaagttgtgtaatcatgacttgttcaaaagtaacatcttatatttccaagacacattttttatttgtggaatcgttaaccattgccttgagggc 7437814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 88 - 165
Target Start/End: Complemental strand, 31089862 - 31089786
Alignment:
Q  88 aaagttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttctatttgtagaatccttaa 165  Q
    ||||||||||||||| |  || |||||||||||||| |||||||||  ||| |||||||||||| ||||| |||||||    
T  31089862 aaagttgtgtaatcattactttatcaaaagtaacat-ttatatttcctagacaaaatttctattggtagattccttaa 31089786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 505
Target Start/End: Original strand, 22130054 - 22130089
Alignment:
Q  470 tttcatccaacttaattacttcactaactacaatta 505  Q
    |||||||||||||||||||| |||||||||||||||    
T  22130054 tttcatccaacttaattactccactaactacaatta 22130089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 197
Target Start/End: Complemental strand, 31089572 - 31089485
Alignment:
Q  110 atcaaaagtaacatcttatatttcgaagataaaatttctatttgtagaatccttaagcaatgctttgagggcgctggttagcaagatc 197  Q
    |||||||||||||||||||||||   ||| ||||||| ||||| |||| ||||||| || |||  ||||| | ||| |||||||||||    
T  31089572 atcaaaagtaacatcttatattttttagacaaaatttttatttatagattccttaatcattgccctgaggacactgattagcaagatc 31089485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 505
Target Start/End: Complemental strand, 35311333 - 35311298
Alignment:
Q  470 tttcatccaacttaattacttcactaactacaatta 505  Q
    |||||||||||||||||||| |||||||||||||||    
T  35311333 tttcatccaacttaattactccactaactacaatta 35311298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 195
Target Start/End: Original strand, 48419108 - 48419215
Alignment:
Q  88 aaagttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttctatttgtagaatccttaagcaatgctttgagggcgctggt 187  Q
    ||||||||| ||||| |  || |||||||||||  | ||| ||||| || | |||||||||||||||||| ||||||| || |||  |||||||  ||||    
T  48419108 aaagttgtgcaatcattactttatcaaaagtaaagttttacatttccaaaacaaaatttctatttgtagattccttaaccactgccctgagggcattggt 48419207  T
Q  188 tagcaaga 195  Q
    ||||||||    
T  48419208 tagcaaga 48419215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 505
Target Start/End: Complemental strand, 49428452 - 49428417
Alignment:
Q  470 tttcatccaacttaattacttcactaactacaatta 505  Q
    |||||||||||||||||||| |||||||||||||||    
T  49428452 tttcatccaacttaattactccactaactacaatta 49428417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 471 - 505
Target Start/End: Complemental strand, 26147724 - 26147690
Alignment:
Q  471 ttcatccaacttaattacttcactaactacaatta 505  Q
    ||||||||||||||||||| |||||||||||||||    
T  26147724 ttcatccaacttaattactccactaactacaatta 26147690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 416
Target Start/End: Complemental strand, 4068444 - 4068407
Alignment:
Q  379 ttgctaacaagtgcctttagggcactagttaatgattc 416  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  4068444 ttgctaacaagtgcccttagggcactagttaaggattc 4068407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 19480572 - 19480616
Alignment:
Q  88 aaagttgtgtaatcactgtttgatcaaaagtaacatcttatattt 132  Q
    ||||||||||||||| |  || |||||||||||||||||||||||    
T  19480572 aaagttgtgtaatcattactttatcaaaagtaacatcttatattt 19480616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 43970099 - 43970047
Alignment:
Q  113 aaaagtaacatcttatatttcgaagataaaatttctatttgtagaatccttaa 165  Q
    ||||||||||||||||||||  |||||||||||| |||| ||| | |||||||    
T  43970099 aaaagtaacatcttatatttttaagataaaatttatattcgtatattccttaa 43970047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 24 - 165
Target Start/End: Original strand, 32134018 - 32134158
Alignment:
Q  24 agaatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagtaacat 123  Q
    |||||| |||| ||||  |||||| ||||||||||||||| |||| ||| || | ||||| || ||||||||||||||| |  ||||| |||| ||||||    
T  32134018 agaatgctaactagtgccctaagggcattggttaagcatctaaaataagtaagttttcttgaa-aaagttgtgtaatcattacttgataaaaaataacat 32134116  T
Q  124 cttatatttcgaagataaaatttctatttgtagaatccttaa 165  Q
    ||||||||   || | |||||||||||||||||| |||||||    
T  32134117 cttatattctcaaaacaaaatttctatttgtagattccttaa 32134158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 110 - 195
Target Start/End: Complemental strand, 17835032 - 17834947
Alignment:
Q  110 atcaaaagtaacatcttatatttcgaagataaaatttctatttgtagaatccttaagcaatgctttgagggcgctggttagcaaga 195  Q
    ||||||||||| |||||||||||| |||| || ||| ||||||||||||||||||| ||||||   |||||  |||||||||||||    
T  17835032 atcaaaagtaatatcttatatttcaaagacaatattgctatttgtagaatccttaaccaatgccccgagggtactggttagcaaga 17834947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 89 - 165
Target Start/End: Complemental strand, 5611206 - 5611130
Alignment:
Q  89 aagttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttctatttgtagaatccttaa 165  Q
    ||||||| |||| | | |||||| ||||||||||||||||||||| |||| ||||||||||||| |||| |||||||    
T  5611206 aagttgtataattattatttgattaaaagtaacatcttatatttctaagacaaaatttctatttatagattccttaa 5611130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 227300 - 227477
Alignment:
Q  19 ttaggagaatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaa-atgttcttaaagaaagttgtgtaatcactgtttg-atcaaaa 116  Q
    ||||||||||||||| |||||    ||||  | ||||||||||||||||| ||| || || || | ||| ||| ||||||||||| |||||  |||||||    
T  227300 ttaggagaatgttaatcagtgcctcaagggaaatggttaagcatccaaaagaagtaagattttatgaaaaaaa-ttgtgtaatcattgtttttatcaaaa 227398  T
Q  117 gtaacatcttatatttcgaagataaaatttctatttgtagaatccttaagcaatgctttgagggcgctggttagcaaga 195  Q
    ||||||||||||||||  || | ||||||||||||| |||| ||||||| || |||  | ||| | |||||||||||||    
T  227399 gtaacatcttatattttcaaaaaaaaatttctatttatagattccttaaccattgccctaaggacactggttagcaaga 227477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 195
Target Start/End: Complemental strand, 19320411 - 19320242
Alignment:
Q  26 aatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagtaacatct 125  Q
    ||||||||||| |||||  ||||||  | ||||||||  |||||||| || | ||| |||| | ||||||||||||  |  || |||||||||||||| |    
T  19320411 aatgttaaccaatgttcctaggacaacgattaagcatttaaaacaagtaagttttcataaaaagagttgtgtaatcgttactttatcaaaagtaacattt 19320312  T
Q  126 tatatttcgaagataaaatttctatttgtagaatccttaagcaatgctttgagggcgctggttagcaaga 195  Q
    |||||||  |||| ||||  | |||||||||| ||||||| || | | |||||||| || ||||||||||    
T  19320311 tatatttgcaagacaaaaaatttatttgtagattccttaatcattaccttgagggcactagttagcaaga 19320242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 108 - 195
Target Start/End: Complemental strand, 17454031 - 17453944
Alignment:
Q  108 tgatcaaaagtaacatcttatatttcgaagataaaatttctatttgtagaatccttaagcaatgctttgagggcgctggttagcaaga 195  Q
    |||||||||||||||||||||||||  || |||||||||  |||| || |||| |||| ||||||  ||| ||| |||||||||||||    
T  17454031 tgatcaaaagtaacatcttatattttcaaaataaaattttcatttataaaatcgttaaccaatgccctgaaggcactggttagcaaga 17453944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 470 - 505
Target Start/End: Original strand, 17828951 - 17828986
Alignment:
Q  470 tttcatccaacttaattacttcactaactacaatta 505  Q
    ||||||||||||||||||||||||||||||||||||    
T  17828951 tttcatccaacttaattacttcactaactacaatta 17828986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 195
Target Start/End: Original strand, 6770830 - 6770976
Alignment:
Q  49 cattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttct 148  Q
    ||||||||||||| ||||||||||  | | ||  |||| |||||| |||||| | | ||| ||||||||| | |  ||||||||  |||||||| |||||    
T  6770830 cattggttaagcaaccaaaacaagtcactttttataaaaaaagttatgtaattattatttaatcaaaagtcaaaatttatattttcaagataaattttct 6770929  T
Q  149 atttgtagaatccttaagcaatgctttgagggcgctggttagcaaga 195  Q
    |||| |||  ||||||| ||||||  | ||||| |||||||||||||    
T  6770930 atttatagtttccttaaccaatgccctaagggcactggttagcaaga 6770976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 170
Target Start/End: Complemental strand, 17345963 - 17345838
Alignment:
Q  44 aaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaa 143  Q
    ||||| ||||||||||||| ||||||||  |||| ||  | || |||||| ||||||| ||  ||||||||||||||||| ||||||||  || | ||||    
T  17345963 aaggatattggttaagcattcaaaacaaataaattttagtgaa-aaagttatgtaatcgctacttgatcaaaagtaacattttatatttttaaaacaaaa 17345865  T
Q  144 tttctatttgtagaatccttaagcaat 170  Q
    ||| ||||||| || ||||||| ||||    
T  17345864 tttttatttgttgattccttaatcaat 17345838  T

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Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 31223164 - 31223245
Alignment:
Q  21 aggagaatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatca 102  Q
    ||||||||| ||||| ||| || |||| |||||||||| ||||||||||||| || | ||| | || |||||||||||||||    
T  31223164 aggagaatgctaaccggtgctccaagggcattggttaaacatccaaaacaagtaagttttcatgaaaaaagttgtgtaatca 31223245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 88 - 153
Target Start/End: Complemental strand, 33121389 - 33121324
Alignment:
Q  88 aaagttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttctatttg 153  Q
    ||||||||||||||| |||||||| |||| |||||||||||||||  |||| |||| || ||||||    
T  33121389 aaagttgtgtaatcattgtttgataaaaaataacatcttatattttcaagacaaaaattttatttg 33121324  T

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Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 505
Target Start/End: Original strand, 13087541 - 13087576
Alignment:
Q  470 tttcatccaacttaattacttcactaactacaatta 505  Q
    |||||||||||||||||||||||||||||| |||||    
T  13087541 tttcatccaacttaattacttcactaactataatta 13087576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 505
Target Start/End: Original strand, 15058128 - 15058163
Alignment:
Q  470 tttcatccaacttaattacttcactaactacaatta 505  Q
    ||||||||||||||| ||||||||||||||||||||    
T  15058128 tttcatccaacttaaatacttcactaactacaatta 15058163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 119
Target Start/End: Original strand, 27082303 - 27082377
Alignment:
Q  44 aaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagta 119  Q
    ||||||||||||||| || |||||||||| |||| ||| | || ||||||||||||| | | ||||||||||||||    
T  27082303 aaggacattggttaaacaaccaaaacaagtaaattttcatgaa-aaagttgtgtaatgattatttgatcaaaagta 27082377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 505
Target Start/End: Complemental strand, 31894313 - 31894278
Alignment:
Q  470 tttcatccaacttaattacttcactaactacaatta 505  Q
    ||||||||||||||| ||||||||||||||||||||    
T  31894313 tttcatccaacttaactacttcactaactacaatta 31894278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 132
Target Start/End: Original strand, 30929463 - 30929575
Alignment:
Q  20 taggagaatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagta 119  Q
    |||||||||| |||| |||| || |||| ||||||||||||  | |||||||| |||| || | | | ||||| || |||| | | |||||||||| |||    
T  30929463 taggagaatgctaactagtgctccaagggcattggttaagcgactaaaacaagtaaattttttaataaaaagtagtataattattatttgatcaaatgta 30929562  T
Q  120 acatcttatattt 132  Q
    |||||||| ||||    
T  30929563 acatcttaaattt 30929575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 21 - 165
Target Start/End: Original strand, 120638 - 120781
Alignment:
Q  21 aggagaatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagtaa 120  Q
    |||| ||||||||||||||||||||||| | ||||||| ||||||||| ||| || | ||  |  | ||||||||| ||||  |  || | ||||||| |    
T  120638 aggacaatgttaaccagtgttctaaggataatggttaaacatccaaaataagtaagtttttgtgga-aaagttgtgcaatcgttactttaccaaaagtga 120736  T
Q  121 catcttatatttcgaagataaaatttctatttgtagaatccttaa 165  Q
    ||||||||||||  |||| |||||||||||||||||| |||||||    
T  120737 catcttatattttcaagacaaaatttctatttgtagattccttaa 120781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 54 - 172
Target Start/End: Complemental strand, 28962 - 28843
Alignment:
Q  54 gttaagcatccaaaacaagcaaatgttct-taaagaaagttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttctattt 152  Q
    ||||||||||||||||||| || | || | |||| ||||| ||||||||| |  || |||||||  ||||| |||||| |  |||| |||||||||||||    
T  28962 gttaagcatccaaaacaagtaatttttttataaaaaaagtggtgtaatcattactttatcaaaaagaacatattatatctataagacaaaatttctattt 28863  T
Q  153 gtagaatccttaagcaatgc 172  Q
    ||||| ||||||| ||||||    
T  28862 gtagattccttaatcaatgc 28843  T

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Target: scaffold0299 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 171
Target Start/End: Complemental strand, 18133 - 18011
Alignment:
Q  49 cattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttct 148  Q
    ||||||||||||| |||||||||| || | ||  |||| ||||||||||||| | |  || ||||||||| | | |||||||||  |||||||| |||||    
T  18133 cattggttaagcaaccaaaacaagtaactttttataaaaaaagttgtgtaattattacttaatcaaaagtcaaaacttatatttttaagataaattttct 18034  T
Q  149 atttgtagaatccttaagcaatg 171  Q
    |||| |||  ||||||| |||||    
T  18033 atttatagtttccttaaccaatg 18011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 92 - 165
Target Start/End: Complemental strand, 30061 - 29988
Alignment:
Q  92 ttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttctatttgtagaatccttaa 165  Q
    ||||||||| | | ||| || ||||||||||||||||||||  || ||||| |||||||||||||| |||||||    
T  30061 ttgtgtaattattatttaattaaaagtaacatcttatattttcaaaataaagtttctatttgtagattccttaa 29988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0957 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0957
Description:

Target: scaffold0957; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 115 - 193
Target Start/End: Complemental strand, 1964 - 1887
Alignment:
Q  115 aagtaacatcttatatttcgaagataaaatttctatttgtagaatccttaagcaatgctttgagggcgctggttagcaa 193  Q
    ||||||||||||| ||||  |||| |||||||||||||||||| || |||| |  || ||||||||| |||||||||||    
T  1964 aagtaacatctta-atttacaagacaaaatttctatttgtagattcattaacccttggtttgagggcactggttagcaa 1887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 471 - 505
Target Start/End: Complemental strand, 8084 - 8050
Alignment:
Q  471 ttcatccaacttaattacttcactaactacaatta 505  Q
    ||||||||||||||||||| |||||||||||||||    
T  8084 ttcatccaacttaattactccactaactacaatta 8050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 153
Target Start/End: Original strand, 36567 - 36632
Alignment:
Q  88 aaagttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttctatttg 153  Q
    |||||||| |||||| | ||| |||||||||||||||||||||||  || | ||||||| ||||||    
T  36567 aaagttgtataatcattatttaatcaaaagtaacatcttatattttcaaaacaaaatttttatttg 36632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 92 - 132
Target Start/End: Original strand, 7398 - 7438
Alignment:
Q  92 ttgtgtaatcactgtttgatcaaaagtaacatcttatattt 132  Q
    ||||||||||| | ||||||||||||||| |||||||||||    
T  7398 ttgtgtaatcattatttgatcaaaagtaatatcttatattt 7438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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