View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9327-LTR4-TNT-insertion-4 (Length: 327)
Name: F9327-LTR4-TNT-insertion-4
Description: F9327-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9327-LTR4-TNT-insertion-4 |
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Alignment Details
Target: chr6 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 9 - 317
Target Start/End: Original strand, 1710654 - 1710962
Alignment:
| Q |
9 |
gatatttgtcacacactttgctaaatttcaatgcggatggaacaatctttgaaagagtttgtggaaagattgatattgaaaactatatagaattgtagaa |
108 |
Q |
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| T |
1710654 |
gatatttgtcacacactttgctaaatttcaatgcggatggaacaatctttgaaagagtttgtggaaagattgatattgaaaactatatagaattgtagaa |
1710753 |
T |
|
| Q |
109 |
gtaatatatgagttggttaatttggatggaaaaggatttattataaagaggactttatcaaatataattacatcaagaaaaagttcacctatagtggaga |
208 |
Q |
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| T |
1710754 |
gtaatatatgagttggttaatttggatggaaaaggatttattataaagaggactttatcaaatataattacatcaagaaaaagttcacctatagtggaga |
1710853 |
T |
|
| Q |
209 |
aatagttggtcttatggcttctgattccagcaaagaacatggccatttccataagagtgggatgctatgctattgctaagaataggaaaaaggtttcatt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1710854 |
aatagttggtcttatggcttctgattccagcaaagaacatggccatttccataagagtgggatgctatgctattgctaagaataggaaaaaggtttcatt |
1710953 |
T |
|
| Q |
309 |
attagaatt |
317 |
Q |
| |
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||||||||| |
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| T |
1710954 |
attagaatt |
1710962 |
T |
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