View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9327-LTR4-TNT-insertion-6 (Length: 919)
Name: F9327-LTR4-TNT-insertion-6
Description: F9327-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9327-LTR4-TNT-insertion-6 |
 | |
|
| [»] chr2 (4 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 912; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 912; E-Value: 0
Query Start/End: Original strand, 8 - 919
Target Start/End: Complemental strand, 33085067 - 33084156
Alignment:
| Q |
8 |
ttaagaggaattcctgcacaattcgaatgaataagagacattattaaatggatattttacgtgaatgcaaagatgttatgaacattaaaaatacaaatga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33085067 |
ttaagaggaattcctgcacaattcgaatgaataagagacattattaaatggatattttacgtgaatgcaaagatgttatgaacattaaaaatacaaatga |
33084968 |
T |
|
| Q |
108 |
gtttagtcgttgaacgtgtggggcagtttccctacagtatttgaatgtacggaacttcaaaaacatccgtaagtgtgtaatctgttagtaatttcataca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33084967 |
gtttagtcgttgaacgtgtggggcagtttccctacagtatttgaatgtacggaacttcaaaaacatccgtaagtgtgtaatctgttagtaatttcataca |
33084868 |
T |
|
| Q |
208 |
tcaaactaacaaatgaaatacatattagaggatcaagttgataagcaaatgacaatttcagatatgtttttgtaatacaatcgaagactactaacaccga |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33084867 |
tcaaactaacaaatgaaatacatattagaggatcaagttgataagcaaatgacaatttcagatatgtttttgtaatacaatcgaagactactaacaccga |
33084768 |
T |
|
| Q |
308 |
ctaacatattcaacgacccaaatgattgtgtaatcaaaatatagatgcgaaagtacactaaagtcacttacattttgtattttctcaatgatagaataac |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33084767 |
ctaacatattcaacgacccaaatgattgtgtaatcaaaatatagatgcgaaagtacactaaagtcacttacattttgtattttctcaatgatagaataac |
33084668 |
T |
|
| Q |
408 |
caaattccaaaatctttacattggaaagcacttgcagccatcttaggaagattgaagcttctccgtcattggaaaagccgtacatatttacttgttgaag |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33084667 |
caaattccaaaatctttacattggaaagcacttgcagccatcttaggaagattgaagcttctccgtcattggaaaagccgtacatatttacttgttgaag |
33084568 |
T |
|
| Q |
508 |
aaaagaaagattgcatgtggaggataaggatttctgaaaaataggacaatccctgatagtaaaagaactaagatttggagtagaaagtgaatattggtca |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33084567 |
aaaagaaagattgcatgtggaggataaggatttctgaaaaataggacaatccctgatagtaaaagaactaagatttggagtagaaagtgaatattggtca |
33084468 |
T |
|
| Q |
608 |
gttgatatgtaacatatagtcaaattggatagtgtctgattagacatgtagaggacttgtgcatcctcaatcaaagaacaaccactgagaaccaaagtat |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33084467 |
gttgatatgtaacatatagtcaaattggatagtgtctgattagacatgtagaggacttgtgcatcctcaatcaaagaacaaccactgagaaccaaagtat |
33084368 |
T |
|
| Q |
708 |
tcaacacgtgacagtttggaaaggggtcagcacaatgattgtgagttgcaaagaagttgaaaaattgaagatgcaaggttcttaatgcaggcaagtgaag |
807 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33084367 |
tcaacacgtgacagtttggaaaggggtcagcacaatgattgtgagttgcaaagaagttgaaaaattgaagatgcaaggttcttaatgcaggcaagtgaag |
33084268 |
T |
|
| Q |
808 |
agattttggacactttgcattcctaccataagaaagctcaagaaatgtcaaagagtgagagccaaagattaaagggagtacgtaactcagattttggaca |
907 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33084267 |
agattttggacactttgcattcctaccataagaaagctcaagaaatgtcaaagagtgagagccaaagattaaagggagtacgtaactcagattttggaca |
33084168 |
T |
|
| Q |
908 |
gcacgaccgacg |
919 |
Q |
| |
|
|||||||||||| |
|
|
| T |
33084167 |
gcacgaccgacg |
33084156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 576 - 824
Target Start/End: Complemental strand, 24845577 - 24845330
Alignment:
| Q |
576 |
taagatttggagtagaaagtgaatattggtcagttgatatgtaacatatagtcaaattggatagtgtctgattagacatgtagaggacttgtgcatcctc |
675 |
Q |
| |
|
||||||||||||||||||| ||| ||||| || ||||| |||| ||||||| | |||||| |||| || ||| ||| | |||| |||||||||||| |
|
|
| T |
24845577 |
taagatttggagtagaaagcgaaaattggcaagctgatacgtaagatatagttagattggaaagtgcagaatcagatatgcaaaggatttgtgcatcctc |
24845478 |
T |
|
| Q |
676 |
aatcaaagaacaaccactgagaaccaaagtattcaacacgtgacagtttggaaaggggtcagcacaatgattgtgagttgcaaagaagttgaaaaattga |
775 |
Q |
| |
|
| |||| || || ||| | || || |||||||| ||||| |||||||||| ||| || |||||| | |||| ||||||||| | ||||||| | ||| |
|
|
| T |
24845477 |
actcaatgagcacccagtaagtactaaagtatttaacacatgacagtttgaaaaagg-tcagcatagtgatggtgagttgctacaaagttgacacatttg |
24845379 |
T |
|
| Q |
776 |
agatgcaaggttcttaatgcaggcaagtgaagagattttggacactttg |
824 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
24845378 |
agatgcaaggttcttactgcaggcaagtgaagagattttggacactttg |
24845330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 826 - 887
Target Start/End: Complemental strand, 24844660 - 24844599
Alignment:
| Q |
826 |
attcctaccataagaaagctcaagaaatgtcaaagagtgagagccaaagattaaagggagta |
887 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||| ||||||||||||||| ||| ||||| |
|
|
| T |
24844660 |
attcctactataagaaagatcaagaaatgtcaaagaatgagagccaaagattgaagagagta |
24844599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 415 - 462
Target Start/End: Complemental strand, 24845707 - 24845660
Alignment:
| Q |
415 |
caaaatctttacattggaaagcacttgcagccatcttaggaagattga |
462 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
24845707 |
caaaatcttcacattggaaagcacttgcagccattttaagaagattga |
24845660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 25)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 230 - 907
Target Start/End: Original strand, 9138108 - 9138774
Alignment:
| Q |
230 |
tattagaggatcaagttgataagcaaatgacaatttcagatatgtttttgtaatacaatcgaagactactaacaccgactaacatattcaacgacccaaa |
329 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||| ||||||||||| |||| ||| |
|
|
| T |
9138108 |
tattagaggacaaagttgataagcaaatgacaagttcagatatgtttttgtaatacattcaaagactactaacaccgaccaacatattcaaggaccaaaa |
9138207 |
T |
|
| Q |
330 |
tgattgtgtaatcaaaatatagatgcgaaagtacactaaagtcacttacattttgtattttctcaatgatagaataaccaaattccaaaatctttacatt |
429 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||||||||| || || ||||||||||||||||||||| ||||| |
|
|
| T |
9138208 |
tgattgtg-------------------aaagtacactaaagtgacttacattttgtattttctcaaagacagcataaccaaattccaaaatcttgacatt |
9138288 |
T |
|
| Q |
430 |
ggaaagcacttgcagccatcttaggaagattgaagcttctccgtcattggaaaagccgtacatatttacttgttgaagaaaagaaagattgcatgtggag |
529 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9138289 |
ggcaagcacttgcagccatcttaagaagattgaagcttccccgttattggaaaagccatacatatttacttgttgaagaaaagaaagattgcatgtggag |
9138388 |
T |
|
| Q |
530 |
gataaggatttctgaaaaataggacaatccctgatagtaaaagaactaagatttggagtagaaagtgaatattggtcagttgatatgtaacatatagtca |
629 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| | | |||||||| |
|
|
| T |
9138389 |
gataaggatttctgaaaaataggacaatcatcgatagtaaaagaactaagatttggagcagaaagtgaatattggtcagctgatacttttcttatagtca |
9138488 |
T |
|
| Q |
630 |
aattggatagtgtctgattagacatgtagaggacttgtgcatcctcaatcaaagaacaaccactgagaaccaaagtattcaacacgtgacagtttggaaa |
729 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9138489 |
aattggatagtgtctgattagatatgcagaggacttgtgcatcctcaatcaaagaacaagcaatgagaaccaaagtattcaacacgtgacagtttggaaa |
9138588 |
T |
|
| Q |
730 |
ggggtcagcacaatgattgtgagttgcaaagaagttgaaaaattgaagatgcaaggttcttaatgcaggcaagtgaagagattttggacactttgca--- |
826 |
Q |
| |
|
|||||||||||| |||| ||||||||||| |||| ||| ||||||||||||||||||||||||| || | ||||||||||||||||||||||||| |
|
|
| T |
9138589 |
ggggtcagcacagtgatcgtgagttgcaacaaagtggaaccattgaagatgcaaggttcttaatgctggtatgtgaagagattttggacactttgcatac |
9138688 |
T |
|
| Q |
827 |
------ttcctaccataagaaagctcaagaaatgtcaaagagtgagagccaaagattaaagggagtacgtaactcagattttggaca |
907 |
Q |
| |
|
||| ||| ||||||||| |||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
9138689 |
ccgtttttcatacaataagaaaggtcaagaaatgtcaaagagcgagagccaaagagtaaagggagta-ataactcagattttggaca |
9138774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 184 - 907
Target Start/End: Original strand, 8040859 - 8041590
Alignment:
| Q |
184 |
gtaatctgttagtaatttcatacatcaaactaacaaatgaaatacatattagaggatcaagttgataagcaaatgacaatttcagatatgtttttgtaat |
283 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||| ||| |||||||||||||||| |
|
|
| T |
8040859 |
gtaatctgttagtaatttcatagatcaaactaacaaatgaaatacatcttagaggctcaagttgataagaaaatgacaaattcggatatgtttttgtaat |
8040958 |
T |
|
| Q |
284 |
acaatcgaagactactaacaccgactaacatattcaacgacccaaatgattgtgtaatcaaaatatagatgcgaaagtacactaaagtcacttacatttt |
383 |
Q |
| |
|
||| || ||||||||| |||| || |||||||||||| |||||||||| |||||||||||||||||||||| |||||||||| | |||||| ||| |||| |
|
|
| T |
8040959 |
acattcaaagactacttacacggattaacatattcaaggacccaaatgtttgtgtaatcaaaatatagatgtgaaagtacacaacagtcacctacctttt |
8041058 |
T |
|
| Q |
384 |
gtattttctcaatgatagaataaccaaattccaaaatctttacattggaaagcacttgcagccatcttaggaagattgaagcttctccgtcattggaaaa |
483 |
Q |
| |
|
||||| | ||||||| |||||| ||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||| |||||||| |
|
|
| T |
8041059 |
gtattgtttcaatgacagaatagtcaaatctcaaaatctttacattggccagcacttgcagccatcttaagaagattgaagcttccacgttattggaaat |
8041158 |
T |
|
| Q |
484 |
gccgtacatatttacttgttgaagaaaagaaagattgcatgtggaggataaggatttctgaaaaataggacaatccctgatagtaaaagaactaagattt |
583 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||| ||| || |||||| || || | | |||||||||||||||||||||| |
|
|
| T |
8041159 |
gccatacatatttacttgttgaagaaaagaaagattgcatgtggaggccaagagttgacgaaaaaaagaaccaccatggatagtaaaagaactaagattt |
8041258 |
T |
|
| Q |
584 |
ggagtagaaagtgaatattggtcagttgatatgtaacatatagtcaaattggatagtgtctgattagacatgtagaggacttgtgcatcctcaatcaaag |
683 |
Q |
| |
|
||||||||||| ||| ||||| ||| ||||| || ||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
8041259 |
ggagtagaaagcgaaaattggacagctgatacataggttatagtcaaattggataatgtctgattagatatgcagaggacttgtgcatcctcaatcaaag |
8041358 |
T |
|
| Q |
684 |
aacaaccactgagaaccaaagtattcaacacgtgacagtttggaaaggggtcagcacaatgattgtgagttgcaaagaagttgaaaaattgaagatgcaa |
783 |
Q |
| |
|
|||| | | |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||| | ||||||||| |
|
|
| T |
8041359 |
aacagctatcgagaaccaaaatattcaacacgtgacagtttggaaaagggtcagcacaatgattgtgagttgcaacaaatctgaaaaaattaagatgcaa |
8041458 |
T |
|
| Q |
784 |
ggttcttaatgcaggcaagtgaagagattttggacactttgcat-----tcctacc-------ataagaaagctcaagaaatgtcaaagagtgagagcca |
871 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| || |||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
8041459 |
ggttcttaatgcaggtaagtgaagagattttggacactttgcatacccgtcataccaactataataacaaagctcaagaaatgtcaaagagtgagagcca |
8041558 |
T |
|
| Q |
872 |
aagattaaagggagtacgtaactcagattttggaca |
907 |
Q |
| |
|
||||||||||| | ||||||||||||||||||| |
|
|
| T |
8041559 |
aagattaaagg----aagtaactcagattttggaca |
8041590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 8 - 887
Target Start/End: Complemental strand, 8417497 - 8416626
Alignment:
| Q |
8 |
ttaagaggaattcctgcacaattcgaatgaataagagacattattaaatggatattttacgtgaatgcaaagatgttatgaacattaaaaatacaaatga |
107 |
Q |
| |
|
||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
8417497 |
ttaagcggaattcctgcacaattcaaatgaatagcagacattattaaatggatattttacgcaaatgcggagatgttatgaacattaaaa-tacaaatga |
8417399 |
T |
|
| Q |
108 |
gtttagtcgttgaacgtgtggggcagtttccctacagtatttgaatgtacggaacttcaaaaacatccgtaagtgtgtaatctgttagtaatttcataca |
207 |
Q |
| |
|
|||||||| |||||| |||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
|
|
| T |
8417398 |
gtttagtctttgaacttgtggg-----------acggtatttgaatgtacggaacttcaaaaacatccgtaagtgtttaatctgttagtaatttcataga |
8417310 |
T |
|
| Q |
208 |
tcaaactaacaaatgaaatacatattagaggatcaagttgataagcaaatgacaatttcagatatgtttttgtaatacaatcgaagactactaacaccga |
307 |
Q |
| |
|
||||||||||||||||||||||||| |||||| || || | | |||| ||| || |||||||||||||||||| || ||||||||| ||||||| |
|
|
| T |
8417309 |
tcaaactaacaaatgaaatacatat-agaggaccatattaactaacaaa----aat--catatatgtttttgtaatacattcaaagactacttacaccga |
8417217 |
T |
|
| Q |
308 |
ctaacatattcaacgacccaaatgattgtgtaatcaaaatatagatgcgaaagtacactaaagtcacttacattttgtattttctcaatgatagaataac |
407 |
Q |
| |
|
|||||||||||| |||| |||||||||||||| ||||||||| ||| |||| | |||||||||| ||||| | |||| | || | | | |
|
|
| T |
8417216 |
ttaacatattcaaggacctaaatgattgtgtaaccaaaatatatatgtgaaatt----------cacttacattgtgtatcgtttcaagaacagcagagc |
8417127 |
T |
|
| Q |
408 |
caaattccaaaatctttacattggaaagcacttgcagccatcttaggaagattgaagcttctccgtcattggaaaagccgtacatat---------ttac |
498 |
Q |
| |
|
||| || ||||||||||||||||| || ||||||||||||||||| ||||||||||||||| ||| | || || |||| | |||| |||| |
|
|
| T |
8417126 |
caactttcaaaatctttacattggcaaacacttgcagccatcttaagaagattgaagcttccccgatagtgaaatagccatccataccagtaaaagttac |
8417027 |
T |
|
| Q |
499 |
ttgttgaagaaaagaaagattgcatgtggaggataaggatttctgaaaaataggacaatccctgatagtaaaagaactaagatttggagtagaaagtgaa |
598 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| || ||||||| || || | | |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
8417026 |
ttgttgaagaaaagaaagattgcatgtggaggccaagggttgatgaaaaagagaactacctttgatagtaaaagaactaagatttggagtagaaagcgaa |
8416927 |
T |
|
| Q |
599 |
tattggtcagttgatatgtaacatatagtcaaattggatagtgtctgattagacatgtagaggacttgtgcatcctcaatcaaagaacaaccactgagaa |
698 |
Q |
| |
|
||||||||| ||||| ||| |||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
8416926 |
aattggtcagctgatacgtaggatatagtcaaattggataatgtctgattagatatgcagaggacttgtgcatcctcaatcaaagaacaaccactgataa |
8416827 |
T |
|
| Q |
699 |
ccaaagtattcaacacgtgacagtttggaaaggggtcagcacaatgattgtgagttgcaaagaagttgaaaaattgaagatgcaaggttcttaatgcagg |
798 |
Q |
| |
|
|||||||||||| ||| |||||||||| |||||| ||||||||||||| ||||||||||| ||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
8416826 |
ccaaagtattcagcacatgacagtttgaaaagggctcagcacaatgatcgtgagttgcaacaaagttaaaaaatttaagatgcaaggttcttaatgcagg |
8416727 |
T |
|
| Q |
799 |
caagtgaagagattttggacactttgcat-----tcctacc-------ataagaaagctcaagaaatgtcaaagagtgagagccaaagattaaagggagt |
886 |
Q |
| |
|
||||||||||||||||||||||| |||| || |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8416726 |
taagtgaagagattttggacacttcgcataccagtcatacctactataataagaaagctcaagaaatgtcaaagagtgagagccaaagattaacgggagt |
8416627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 392 - 907
Target Start/End: Original strand, 8035653 - 8036173
Alignment:
| Q |
392 |
tcaatgatagaataaccaaattccaaaatctttacattggaaagcacttgcagccatcttaggaagattgaagcttctccgtcattggaaaagccgtaca |
491 |
Q |
| |
|
||||||| |||||| ||||||| ||||||||||||||||| ||||||||||||||| ||| |||||| ||||||| | | |||||||||| | |||| |
|
|
| T |
8035653 |
tcaatgacagaatagccaaatttcaaaatctttacattggcaagcacttgcagccaatttaagaagatcaaagcttccgcattattggaaaagtcataca |
8035752 |
T |
|
| Q |
492 |
tatttacttgttgaagaaaagaaagattgcatgtggaggataaggatttctgaaaaataggacaatccctgatagtaaaagaactaagatttggagtaga |
591 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||| |||||||||| |
|
|
| T |
8035753 |
tatttacttgttgaagaaaagaaagattgcatgtggaggataagagtttctgaaaaataggacaatgcccgatagtaaaagaactaagccttggagtaga |
8035852 |
T |
|
| Q |
592 |
aagtgaatattggtcagttgatatgtaacatatagtcaaattggatagtgtctgattagacatgtagaggacttgtgcatcctcaatcaaagaacaacca |
691 |
Q |
| |
|
||| |||||||| |||| | || | ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| | | |
|
|
| T |
8035853 |
aagcgaatattgttcagctagtacagatgatatagtcaaattggatagtgtctgattagatatgcagaggacttgtgcatcctcaatcaaagaacagcta |
8035952 |
T |
|
| Q |
692 |
ctgagaaccaaagtattcaacacgtgacagtttggaaaggggtcagcacaatgattgtgagttgcaaagaagttgaaaaattgaagatgcaaggttctta |
791 |
Q |
| |
|
|||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||| || |||||| ||| ||||||||||||||||| |
|
|
| T |
8035953 |
tcgagaaccaaaatattcaacacatgacagttttgaaaggggtcagcacaatgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttctta |
8036052 |
T |
|
| Q |
792 |
atgcaggcaagtgaagagattttggacactttg---------cattcctaccataagaaagctcaagaaatgtcaaagagtgagagccaaagattaaagg |
882 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| |||| |||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
8036053 |
atgcaggcaagtgaagagattttggacactttgtatccgtgttattcctactataacaaagatcaagaaatgtcaaagaatgagagccaaagattaaagg |
8036152 |
T |
|
| Q |
883 |
gagtacgtaactcagattttggaca |
907 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
8036153 |
ga----gtaactcagattttggaca |
8036173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 345 - 907
Target Start/End: Complemental strand, 8411584 - 8411008
Alignment:
| Q |
345 |
aatatagatgcgaaagtacactaaagtcacttacattttgtattttctcaatgatagaataaccaaattccaaaatctttacattggaaagcacttgcag |
444 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| | ||||||| | | || || |||| ||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
8411584 |
aatatagatgtgaaagtacactaaagtcacttacctcttgtattgtttgaaggacagaaccgccaaatttcaaaatctttacattggcaagcacttgcag |
8411485 |
T |
|
| Q |
445 |
ccatcttaggaagattgaagcttctccgtcattg------gaaaagccgtacatatttacttgttgaagaaaagaaagattgcatgtggaggataaggat |
538 |
Q |
| |
|
|||||||| ||||||||||||||| |||| | | |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
8411484 |
ccatcttacgaagattgaagcttcctcgtcctcgttacaggaaaagccatacatatttacttgttgaagaaaagaaagattgcatgtggaggccaagagt |
8411385 |
T |
|
| Q |
539 |
ttctgaaaaataggacaatccctgatagtaaaagaactaagatttggagtagaaagtgaatattggtcagttgatatgtaacatatagtcaaattggata |
638 |
Q |
| |
|
| ||||||| | || | |||||||||||||||||||| |||||||||||| ||| ||||||||| | ||| | || |||||||||| |||||| |
|
|
| T |
8411384 |
tgatgaaaaaaataactactatcgatagtaaaagaactaagatatggagtagaaagcgaaaattggtcagctaatacattacttatagtcaaactggata |
8411285 |
T |
|
| Q |
639 |
gtgtctgattagacatgtagaggacttgtgcatcctcaatcaaagaacaaccactgagaaccaaagtattcaacacgtgacagtttggaaaggggtcagc |
738 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||| ||||||||||||||| ||||| |||||||| |||| ||| ||||| |||||||| |||||||| |
|
|
| T |
8411284 |
atgtctgattagatatgcagaggacttgtgcatcttcaatcaaagaacaatacctgagcaccaaagtcttcagcacatgacattttggaaaagggtcagc |
8411185 |
T |
|
| Q |
739 |
acaatgattgtgagttgcaaagaagttgaaaaattgaagatgcaaggttcttaatgcaggcaagtgaagagattttggacactttgcat-----tcctac |
833 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||| |
|
|
| T |
8411184 |
acaatgattgtgagttgcaacaaagttgaaaaatttaagatgcaaggttcttaatgcaggtaagtgaagagattttggacactttgcatgcccgtcatac |
8411085 |
T |
|
| Q |
834 |
c-------ataagaaagctcaagaaatgtcaaagagtgagagccaaagattaaagggagtacgtaactcagattttggaca |
907 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8411084 |
ctactataataacaaagctcaagaaatgtcaaagagtgagagccaaagattaaaggga----gtaactcagattttggaca |
8411008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 8 - 320
Target Start/End: Original strand, 8035320 - 8035632
Alignment:
| Q |
8 |
ttaagaggaattcctgcacaattcgaatgaataagagacattattaaatggatattttacgtgaatgcaaagatgttatgaacattaaaaatacaaatga |
107 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
8035320 |
ttaagaggaatacctgcacaattcgaatgaataggagacattattaaatggatattttacatgaatgcagagatgttataaacattaaaaatacaaatga |
8035419 |
T |
|
| Q |
108 |
gtttagtcgttgaacgtgtggggcagtttccctacagtatttgaatgtacggaacttcaaaaacatccgtaagtgtgtaatctgttagtaatttcataca |
207 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || | |
|
|
| T |
8035420 |
gtttagccattgaacgtgtggggcagtttccctacagtatttgaatgtacggagcttcaaaaacatccgtatgtgtgtaatctgttagtaatttcgtaga |
8035519 |
T |
|
| Q |
208 |
tcaaactaacaaatgaaatacatattagaggatcaagttgataagcaaatgacaatttcagatatgtttttgtaatacaatcgaagactactaacaccga |
307 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||| | ||| |||||| ||||||||| |||||||||||||| |||||||| || ||||||||||||||| | |
|
|
| T |
8035520 |
tcaaactagcaaataaaatacatattagaggacctagtggataagaaaatgacaagttcagatatgttttcgtaatacattcaaagactactaacaccaa |
8035619 |
T |
|
| Q |
308 |
ctaacatattcaa |
320 |
Q |
| |
|
||||||||||||| |
|
|
| T |
8035620 |
ctaacatattcaa |
8035632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 415 - 885
Target Start/End: Original strand, 8358837 - 8359313
Alignment:
| Q |
415 |
caaaatctttacattggaaagcacttgcagccatcttaggaagattgaagcttctccgtcatt---ggaaaagccgtacatatttacttgttgaagaaaa |
511 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||| ||| |||||||||||||| |||||| ||| ||| | ||||||||||||||||||||| |
|
|
| T |
8358837 |
caaaatctcgacattggcaagcacttgcagccattttaagaagattgaagctttcccgtcaccaccggagaagtaatcaatatttacttgttgaagaaaa |
8358936 |
T |
|
| Q |
512 |
gaaagattgcatgtggaggataaggatttctgaaaaataggacaatccctgatagtaaaagaactaagatttggagtagaaagtgaatattggtcagttg |
611 |
Q |
| |
|
|||||||| ||||||||||||||| || | ||||||||| ||| ||| |||||||||| |||||||||||||||||||||| ||| ||||||||| | |
|
|
| T |
8358937 |
gaaagattacatgtggaggataagagttgccgaaaaatagcacactccgagatagtaaaaaaactaagatttggagtagaaagcgaaaattggtcagcta |
8359036 |
T |
|
| Q |
612 |
atatgtaacatatagtcaaattggatagtgtctgattagacatgtagaggacttgtgcatcctcaatcaaagaacaaccactgagaaccaaagtattcaa |
711 |
Q |
| |
|
||| ||| |||||||||||||||||| |||||||||||| ||| |||||| ||||||||| ||||||||||||||| |||| |||||| ||||| |
|
|
| T |
8359037 |
atacgtaggatatagtcaaattggataatgtctgattagatatgcagaggatttgtgcatcatcaatcaaagaacaatacttgagctgcaaagtgttcaa |
8359136 |
T |
|
| Q |
712 |
cacgtgacagtttggaaaggggtcagcacaatgattgtgagttgcaaagaagttgaaaaattgaagatgcaaggttcttaatgcaggcaagtgaagagat |
811 |
Q |
| |
|
||| |||||||||| ||||||||||||||| |||| |||||||| || |||||||| ||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
8359137 |
cacatgacagtttgaaaaggggtcagcacagtgatagtgagttgtaacaaagttgaagcatttaagatgcaaggttcttaatgcaggcaggtgaagagat |
8359236 |
T |
|
| Q |
812 |
tttggacactttgcattcc---taccataagaaagctcaagaaatgtcaaagagtgagagccaaagattaaagggag |
885 |
Q |
| |
|
||||||||||| |||| || || | ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8359237 |
tttggacacttcgcatacccgttaactaaagaaagctcaagaaatgtcaaagagtgagagccaaagattaaagggag |
8359313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 311 - 887
Target Start/End: Original strand, 43144043 - 43144631
Alignment:
| Q |
311 |
acatattcaacgacccaaatgattgtgtaatcaaaatatagatgcgaaagtacactaaagtcacttacattttgtattttctcaatgatagaataaccaa |
410 |
Q |
| |
|
||||| |||| ||||||||| ||||| ||||||||||| ||| | ||||||| | |||||| |||||||||||||||| | | ||||| ||||||||||| |
|
|
| T |
43144043 |
acatactcaaagacccaaataattgtataatcaaaataaagaggtgaaagtatattaaagtaacttacattttgtattgtttgaatgagagaataaccaa |
43144142 |
T |
|
| Q |
411 |
attccaaaatctttacattggaaagcacttgcagccatcttaggaagattgaagcttctccgt---cattggaaaagccgtacatatttacttgttgaag |
507 |
Q |
| |
|
|| |||||||||||| |||| |||||||||||||||||||| |||| |||||||||| || | ||| | ||| | ||||||||||||||||| |
|
|
| T |
43144143 |
ttttcaaaatctttacgttggcaagcacttgcagccatcttaagaaggttgaagcttccttgtggatgtaggagaggccatcaatatttacttgttgaag |
43144242 |
T |
|
| Q |
508 |
aaaagaaagattgcatgtggaggataaggatttctgaaaaataggacaatccctgatagtaaaagaactaagatttggagtagaaagtgaatattggtca |
607 |
Q |
| |
|
|||||||||||||||||| ||||||||| | ||||||| | || | || || ||||||||| ||||||||||||||||||||||| |||| | | |
|
|
| T |
43144243 |
aaaagaaagattgcatgttgaggataagagcctatgaaaaacaaaactacccaagaaagtaaaagacttaagatttggagtagaaagtgaaaattgctga |
43144342 |
T |
|
| Q |
608 |
gttgatatgtaacatatagtcaaattggatagtgtctgattagacatgtagaggacttgtgcatcctcaatcaaagaacaaccactgagaaccaaagtat |
707 |
Q |
| |
|
| || | || ||||||| ||| |||| |||| | |||||| ||| | ||||||| |||||||| ||||||||||||| | || || |||||| ||| |
|
|
| T |
43144343 |
gctgcaacagaagatatagttaaactggaaagtgcattattagatatgcaaaggacttttgcatcctgaatcaaagaacaatccctaagtaccaaattat |
43144442 |
T |
|
| Q |
708 |
tcaacacgtgacagtttggaaaggggtcagcacaatgattgtgagttgcaaagaagttgaaaaattgaagatgcaaggttcttaatgcaggcaagtgaag |
807 |
Q |
| |
|
| ||| | |||||||||| ||| ||||||||| | |||| ||| ||||||| ||||||| | ||| |||| ||| |||||||||||||||||| | || |
|
|
| T |
43144443 |
ttaactcatgacagtttgaaaaagggtcagcatagtgatggtgtgttgcaacaaagttgacatatttgagatacaaagttcttaatgcaggcaagcgtag |
43144542 |
T |
|
| Q |
808 |
agattttggacactttgc---------attcctaccataagaaagctcaagaaatgtcaaagagtgagagccaaagattaaagggagta |
887 |
Q |
| |
|
||||||||||||| ||| ||||| |||||| ||||||| ||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
43144543 |
agattttggacacactgcaaccccgaaattccgaccatatgaaagcttgagaaatgtcaaagagtgagagactgagattaaagggagta |
43144631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 8 - 234
Target Start/End: Complemental strand, 8411901 - 8411686
Alignment:
| Q |
8 |
ttaagaggaattcctgcacaattcgaatgaataagagacattattaaatggatattttacgtgaatgcaaagatgttatgaacattaaaaatacaaatga |
107 |
Q |
| |
|
|||||||||| |||||||||||| |||| |||| || |||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
8411901 |
ttaagaggaagtcctgcacaatttgaataaataggatacattattaaatggatgtattacgtgaatgcagagatgttatgaacattaaaaatacagatga |
8411802 |
T |
|
| Q |
108 |
gtttagtcgttgaacgtgtggggcagtttccctacagtatttgaatgtacggaacttcaaaaacatccgtaagtgtgtaatctgttagtaatttcataca |
207 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
8411801 |
gtttagtcgttgaacatgtgggg-----------cagtatttgaatgtacagaacttcaaaaacatccgtaagtgtgtaatctgttagttatttcataga |
8411713 |
T |
|
| Q |
208 |
tcaaactaacaaatgaaatacatatta |
234 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
8411712 |
tcaaactaacaaatgaaatacatatta |
8411686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 491 - 813
Target Start/End: Complemental strand, 8404387 - 8404062
Alignment:
| Q |
491 |
atatttacttgttgaagaaaagaaagattgcatgtggaggataaggatttctgaaaaataggacaatccctgatagtaaaagaactaagatttggagtag |
590 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||| | || ||||||||||||||||||||||||||||| |
|
|
| T |
8404387 |
atatttacttgttgaagaaaagaaagattgcttgtggaggataagagtttcttaaaaataggaattttccagatagtaaaagaactaagatttggagtag |
8404288 |
T |
|
| Q |
591 |
aaagtgaatattggtca---gttgatatgtaacatatagtcaaattggatagtgtctgattagacatgtagaggacttgtgcatcctcaatcaaagaaca |
687 |
Q |
| |
|
|||| ||| ||| ||| | |||||||| | ||||||||||| |||| |||||||||||||| ||| |||||||||||||||||||||||||| ||| |
|
|
| T |
8404287 |
aaagcgaaaattcatcagctgatgatatgtgaaatatagtcaaactggacagtgtctgattagatatgcagaggacttgtgcatcctcaatcaaatcaca |
8404188 |
T |
|
| Q |
688 |
accactgagaaccaaagtattcaacacgtgacagtttggaaaggggtcagcacaatgattgtgagttgcaaagaagttgaaaaattgaagatgcaaggtt |
787 |
Q |
| |
|
| ||||| ||||||||||||||| | ||| ||||| |||||| ||| || | |||| ||||||||||| ||||||| ||| |||||| || ||| |
|
|
| T |
8404187 |
aaacctgagcaccaaagtattcaacgcatgaaggtttgaaaagggatcaacatagtgatcgtgagttgcaacaaagttgacgtattcaagatgtaaagtt |
8404088 |
T |
|
| Q |
788 |
cttaatgcaggcaagtgaagagattt |
813 |
Q |
| |
|
|||||| ||||||| |||| |||||| |
|
|
| T |
8404087 |
cttaatacaggcaaatgaaaagattt |
8404062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 743 - 887
Target Start/End: Original strand, 8354614 - 8354767
Alignment:
| Q |
743 |
tgattgtgagttgcaaagaagttgaaaaattgaagatgcaaggttcttaatgcaggcaagtgaagagattttggacactttg---------cattcctac |
833 |
Q |
| |
|
|||| ||||||||||| ||||||| | ||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8354614 |
tgatggtgagttgcaacaaagttgacacatttgagatgcaaggttcttactgcaggcaagtgaagagattttggacactttgtctccgtgttattcctac |
8354713 |
T |
|
| Q |
834 |
cataagaaagctcaagaaatgtcaaagagtgagagccaaagattaaagggagta |
887 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8354714 |
tataacaaagatcaagaaatgtcaaagagtgagagccaaagattaaagggagta |
8354767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 566 - 803
Target Start/End: Original strand, 9576835 - 9577072
Alignment:
| Q |
566 |
gtaaaagaactaagatttggagtagaaagtgaatattggtcagttgatatgtaacatatagtcaaattggatagtgtctgattagacatgtagaggactt |
665 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| || || || ||||||| || || |||||||| || ||||| | |||||| ||| ||||||||| |
|
|
| T |
9576835 |
gtaaaataactaagatttggagtagaaagtgataatcggcaagatgatatgcaagttaaagtcaaatgtgaaagtgtataattagatatgcagaggactt |
9576934 |
T |
|
| Q |
666 |
gtgcatcctcaatcaaagaacaaccactgagaaccaaagtattcaacacgtgacagtttggaaaggggtcagcacaatgattgtgagttgcaaagaagtt |
765 |
Q |
| |
|
||| |||| ||||||| ||||| || ||| ||||| |||||||||||| ||||||| | |||||| |||||||| ||| ||| ||||||| |||| |
|
|
| T |
9576935 |
gtgtttccttaatcaaacaacaataaccgagcaccaatgtattcaacacgagacagttcgaaaagggatcagcacagtgactgttagttgcagcaaagta |
9577034 |
T |
|
| Q |
766 |
gaaaaattgaagatgcaaggttcttaatgcaggcaagt |
803 |
Q |
| |
|
||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
9577035 |
gaagtattcaagatgcaaggttcttaatgcaggcaagt |
9577072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 8040746 - 8040845
Alignment:
| Q |
8 |
ttaagaggaattcctgcacaattcgaatgaataagagacattattaaatggatattttacgtgaatgcaaagatgttatgaacattaaaaatacaaatga |
107 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| | ||||||| |||||||| ||||||||||| |
|
|
| T |
8040746 |
ttaagcggaattcctgcacaattcgaatgaataggagacattattatatggatattttacgtgaatgcagatatgttataaacattaagaatacaaatga |
8040845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 327 - 431
Target Start/End: Complemental strand, 8419022 - 8418918
Alignment:
| Q |
327 |
aaatgattgtgtaatcaaaatatagatgcgaaagtacactaaagtcacttacattttgtattttctcaatgatagaataaccaaattccaaaatctttac |
426 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||| | | ||||||| |||||||||||||||||||||||| |
|
|
| T |
8419022 |
aaatgattgtgtaatcaaaatatatatgtgaaagtacactaaagtcacttacattttttattgtttgaatgataccataaccaaattccaaaatctttac |
8418923 |
T |
|
| Q |
427 |
attgg |
431 |
Q |
| |
|
|||| |
|
|
| T |
8418922 |
gttgg |
8418918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 236 - 465
Target Start/End: Complemental strand, 8404666 - 8404434
Alignment:
| Q |
236 |
aggatcaagttgataagcaaatgacaatttcagatatgtttttgtaatacaatcgaagactac--taacaccgactaacatattcaacgacccaaatgat |
333 |
Q |
| |
|
|||| ||||||||| ||||||||||| |||| | |||||||||||||||| || |||||||| | ||| || |||||||||| || |||||| ||||| |
|
|
| T |
8404666 |
aggaccaagttgattagcaaatgacagattcataaatgtttttgtaatacattcaaagactacgctgacatcgtctaacatatttaaggacccagatgat |
8404567 |
T |
|
| Q |
334 |
tgtgtaa-tcaaaatatagatgcgaaagtacactaaagtcacttacattttgtattttctcaatgatagaataaccaaattccaaaatctttacattgga |
432 |
Q |
| |
|
||| ||| |||||||| ||| | ||||||| |||||||| |||||||| | |||| | ||||| ||| ||||||| || |||||||||||| |||| |
|
|
| T |
8404566 |
tgtttaaatcaaaataaagaagtgaaagtatactaaagtgacttacatagtctattgcttgaatgacagagtaaccaattttcaaaatctttacgttggc |
8404467 |
T |
|
| Q |
433 |
aagcacttgcagccatcttaggaagattgaagc |
465 |
Q |
| |
|
||||||||| ||||| |||| ||||| |||||| |
|
|
| T |
8404466 |
aagcacttgaagccaacttaagaagactgaagc |
8404434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 436 - 820
Target Start/End: Original strand, 8355806 - 8356196
Alignment:
| Q |
436 |
cacttgcagccatcttaggaagattgaagcttctccgtcattggaaaagccgtacatatttacttgttgaagaaaagaaagattgcatgtggaggataag |
535 |
Q |
| |
|
|||||| |||||| ||| ||||||||| | || || |||| || ||||| | ||| || |||||||||||||||||||||||||| |||||| | | | |
|
|
| T |
8355806 |
cacttggagccatgttaagaagattgatgttttgccatcatatgacaagccatgcattttaacttgttgaagaaaagaaagattgcaagtggagaacagg |
8355905 |
T |
|
| Q |
536 |
gatttctgaaaaataggacaatccctgatagtaaaagaactaagatttggagtagaaagtgaatattggtcagttgatat------gtaacatatagtca |
629 |
Q |
| |
|
|| |||||||||| | | || || |||||| ||||||||||||||||||||||||| |||||| || || || |||| ||||||| | |
|
|
| T |
8355906 |
agttgatgaaaaatagacctacccgacatggtaaaatgactaagatttggagtagaaagtgaaaattggtgagctgctagtgctacgtaagatatagtta |
8356005 |
T |
|
| Q |
630 |
aattggatagtgtctgattagacatgtagaggacttgtgcatcctcaatcaaagaacaaccactgagaaccaaagtattcaacacgtgacagtttggaaa |
729 |
Q |
| |
|
||| || |||| | | |||| ||| | ||||||||||| ||||||||||| |||| || || ||||||||||| ||| | |||||||||| ||| |
|
|
| T |
8356006 |
gatttgaaagtgcataactagatatgcaaaggacttgtgcgtcctcaatcaatttacaatcatcaagtaccaaagtatttaactcatgacagtttgaaaa |
8356105 |
T |
|
| Q |
730 |
ggggtcagcacaatgattgtgagttgcaaagaagttgaaaaattgaagatgcaaggttcttaatgcaggcaagtgaagagattttggacac |
820 |
Q |
| |
|
||||| ||| | |||| ||||||||||| ||||||| | ||| |||||||| |||||||||||||| || |||||||||||||||||| |
|
|
| T |
8356106 |
agggtcggcatagtgatggtgagttgcaacaaagttgacacattcgagatgcaaagttcttaatgcaggaaattgaagagattttggacac |
8356196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 229 - 310
Target Start/End: Complemental strand, 8411672 - 8411591
Alignment:
| Q |
229 |
atattagaggatcaagttgataagcaaatgacaatttcagatatgtttttgtaatacaatcgaagactactaacaccgacta |
310 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| | || ||||||||||||| |||| || ||||| ||| |||||||||| |
|
|
| T |
8411672 |
atattagaggatcaagttgatacgcaaatgacaaatgcatatatgtttttgtagtacattcaaagaccactgacaccgacta |
8411591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 366 - 527
Target Start/End: Original strand, 9576662 - 9576825
Alignment:
| Q |
366 |
taaagtcacttacattttgtattttctcaatgatagaataaccaaattccaaaatctttacattggaaagcacttgcagccatct--taggaagattgaa |
463 |
Q |
| |
|
|||||| |||||||| | ||||||| ||||| ||||| | || || ||||||||| ||||||| |||||||||||||||| | || |||||||||| |
|
|
| T |
9576662 |
taaagtaacttacatgtagtatttttcgaatgacagaattattaagtttcaaaatcttgacattggcaagcacttgcagccatatcctaagaagattgaa |
9576761 |
T |
|
| Q |
464 |
gcttctccgtcattggaaaagccgtacatatttacttgttgaagaaaagaaagattgcatgtgg |
527 |
Q |
| |
|
| || ||| |||| || ||||||| ||| ||||||||| ||||||||||| ||||||||||| |
|
|
| T |
9576762 |
gtttttccatcatatgacaagccgtgcatgcttacttgttcaagaaaagaaaaattgcatgtgg |
9576825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 8419160 - 8419103
Alignment:
| Q |
182 |
gtgtaatctgttagtaatttcatacatcaaactaacaaatgaaatacatattagagga |
239 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||| |||||||| ||||||||||||| |
|
|
| T |
8419160 |
gtgtaatttgttagtaatttcatatatcaaactaataaatgaaagacatattagagga |
8419103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 43143942 - 43143991
Alignment:
| Q |
190 |
tgttagtaatttcatacatcaaactaacaaatgaaatacatattagagga |
239 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
43143942 |
tgttagtaatttcatagatcaaactaacaaatgaaagacatattagagga |
43143991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 9138053 - 9138104
Alignment:
| Q |
8 |
ttaagaggaattcctgcacaattcgaatgaataagagacattattaaatgga |
59 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
9138053 |
ttaagaggaattcctgcaaacctcgaatgaataagagacattattaaatgga |
9138104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 829 - 887
Target Start/End: Complemental strand, 8404031 - 8403973
Alignment:
| Q |
829 |
cctaccataagaaagctcaagaaatgtcaaagagtgagagccaaagattaaagggagta |
887 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
8404031 |
cctacgataagaaagctcaagaaatgtcaaagagtgagaggttaagattaaaggtagta |
8403973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 8419366 - 8419310
Alignment:
| Q |
180 |
gtgtgtaatctgttagtaatttcatacatcaaactaacaaatgaaatacatattaga |
236 |
Q |
| |
|
||||||||| |||||||||||| ||| ||||||||||||||||||| | |||||||| |
|
|
| T |
8419366 |
gtgtgtaatttgttagtaattttatagatcaaactaacaaatgaaagatatattaga |
8419310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 8419546 - 8419455
Alignment:
| Q |
18 |
ttcctgcacaattcgaatgaataagagacattattaaatggatattttacgtgaatgcaaagatgttatgaacattaaaaatacaaatgagt |
109 |
Q |
| |
|
||||||||||||| | |||||| |||||||| | |||| |||||||| | | ||| || ||||||||||||||||||||||| ||| |||| |
|
|
| T |
8419546 |
ttcctgcacaattatagtgaataggagacattttcaaattgatattttgcataaatacagagatgttatgaacattaaaaatataaacgagt |
8419455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 8404937 - 8404857
Alignment:
| Q |
18 |
ttcctgcacaattcgaatgaataagagacattattaaatggatattttacgtgaatgcaaagatgttatgaacattaaaaa |
98 |
Q |
| |
|
||||||||||||| || |||||| |||||||| | |||||||||| | | ||||| | ||||||||||||||||||||| |
|
|
| T |
8404937 |
ttcctgcacaattagagtgaatatgagacattttcaaatggatatcctgcatgaatatagagatgttatgaacattaaaaa |
8404857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 1e-37; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 621 - 817
Target Start/End: Complemental strand, 5476802 - 5476606
Alignment:
| Q |
621 |
atatagtcaaattggatagtgtctgattagacatgtagaggacttgtgcatcctcaatcaaagaacaaccactgagaaccaaagtattcaacacgtgaca |
720 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||| |||||||| ||||||||||||||||| |||||| ||||| ||||||||||||||| | ||| |
|
|
| T |
5476802 |
atatagtcaaattggacagtgtctgattagatatgcagaggactagtgcatcctcaatcaaataacaacacctgagcaccaaagtattcaacgcatgaag |
5476703 |
T |
|
| Q |
721 |
gtttggaaaggggtcagcacaatgattgtgagttgcaaagaagttgaaaaattgaagatgcaaggttcttaatgcaggcaagtgaagagattttgga |
817 |
Q |
| |
|
||||| |||||| ||| || | |||| | ||||||||| ||||||| ||| |||||| || ||||||||||||||||| || |||||||||||| |
|
|
| T |
5476702 |
gtttgaaaagggatcaacatagtgatcgcgagttgcaacaaagttgacgtattcaagatgtaaagttcttaatgcaggcaaatgtagagattttgga |
5476606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 235 - 471
Target Start/End: Complemental strand, 5477230 - 5476991
Alignment:
| Q |
235 |
gaggatcaagttgataagcaaatgacaatttcagatatgtttttgtaatacaatcgaagactac--taacaccgactaacatattcaacgacccaaatga |
332 |
Q |
| |
|
||||| ||||||||| ||||||||||| |||| | |||||||||||||||| || |||||||| | || || |||||||||| || ||||||||||| |
|
|
| T |
5477230 |
gaggaccaagttgattagcaaatgacagattcatagatgtttttgtaatacattcaaagactacacttgcatcgtctaacatatttaaggacccaaatga |
5477131 |
T |
|
| Q |
333 |
ttgtgt-aatcaaaatatagatgcgaaagtacactaaagtcacttacattttgtattttctcaatgatagaataaccaaattccaaaatctttacattgg |
431 |
Q |
| |
|
|||| | |||||||||| ||| | ||||||| |||| ||| ||||||||| | |||| | ||||||||| ||||||| || |||||||||||| || | |
|
|
| T |
5477130 |
ttgttttaatcaaaataaagaagtgaaagtatactagagtgacttacattgtctattgcttgaatgatagagtaaccaattttcaaaatctttacgttcg |
5477031 |
T |
|
| Q |
432 |
aaagcacttgcagccatcttaggaagattgaagcttctcc |
471 |
Q |
| |
|
||||||||| ||||| |||| ||||| |||||||||||| |
|
|
| T |
5477030 |
caagcacttgaagccaacttaagaagactgaagcttctcc |
5476991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 491 - 594
Target Start/End: Complemental strand, 5476947 - 5476844
Alignment:
| Q |
491 |
atatttacttgttgaagaaaagaaagattgcatgtggaggataaggatttctgaaaaataggacaatccctgatagtaaaagaactaagatttggagtag |
590 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||| ||| || | ||||||| ||| | | ||||||||| |||| |||||||||||||| |
|
|
| T |
5476947 |
atatttacttgttgaagaaaggaaagattgcatgttgaggacaagacttgttcaaaaataagactgttcaagatagtaaacgaacaaagatttggagtag |
5476848 |
T |
|
| Q |
591 |
aaag |
594 |
Q |
| |
|
|||| |
|
|
| T |
5476847 |
aaag |
5476844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 829 - 887
Target Start/End: Complemental strand, 5476570 - 5476512
Alignment:
| Q |
829 |
cctaccataagaaagctcaagaaatgtcaaagagtgagagccaaagattaaagggagta |
887 |
Q |
| |
|
||||| ||||||||||||||| |||||||| |||| |||| | || ||||||||||||| |
|
|
| T |
5476570 |
cctacgataagaaagctcaaggaatgtcaaggagttagaggctaaaattaaagggagta |
5476512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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