View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9327-LTR4-TNT-insertion-7 (Length: 299)
Name: F9327-LTR4-TNT-insertion-7
Description: F9327-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9327-LTR4-TNT-insertion-7 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 8 - 259
Target Start/End: Complemental strand, 3355915 - 3355664
Alignment:
| Q |
8 |
gatttgactgagttgagagacaactttgatcaaaataacttaatttgtttattatttgattgtatgtgttaggaggacaatgagtaattcattttgataa |
107 |
Q |
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| T |
3355915 |
gatttgactgagttgagagacaactttgatcaaaataacttaatttgtttattatttgattgtatgtgttaggaggacaatgagtaattcattctgataa |
3355816 |
T |
|
| Q |
108 |
tttgatgagattttgtgacttaataatataacatgaaccacgtgcaacacttaaattgtatacaacttctggatattcaaattggatcaaattgactttt |
207 |
Q |
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| T |
3355815 |
tctgatgagattttgtgacttaataatataacatgaaccacgtgcaacacttaaattgtatacaacttctggatattcaaattgaatcaaattgacttct |
3355716 |
T |
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| Q |
208 |
aatccatatttaccattcttgagattttttttaaattacctatttttcaaag |
259 |
Q |
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| T |
3355715 |
aatccatatctaccattcttgagattttttttaaattacctatttttcaaag |
3355664 |
T |
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