View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: F9327-LTR4-TNT-insertion-9 (Length: 365)
Name: F9327-LTR4-TNT-insertion-9
Description: F9327-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] F9327-LTR4-TNT-insertion-9
Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 11 - 357
Target Start/End: Complemental strand, 14690566 - 14690220
Alignment:
Q
11
tgcaagtatgtgaagctgtatccattttatgtgacaaatgacatcgtgttttgcattttatatggttgatcacactagtatttaaaaattatataaataa
110
Q
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
14690566
tgcaagtatgtgaagctgtatccattttatgtgacaaatgacgtcgtgttttgcattttatatggttgatcacactagtatttaaaaattatataaataa
14690467
T
Q
111
cnnnnnnnttgatggacgaattgttaaatgcccaaatcgcaagaaagtaataagttatcgtctccatgtatattgatgttcaacttagcaatcaacagaa
210
Q
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
14690466
caaaaaaattgatggacgaattgttaaatgcccaaatcgcaagaaagtaataagttatcgtctccatgtatattgatgttcaacttagcaatcaacagaa
14690367
T
Q
211
tttaattgtttataagagcagtaaaagtgagtttatggttttacaagtttttaattgtcttgcgcaatgcgagattaggttttggattcaaatgtttaac
310
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
14690366
tttaattgtttataagagcagtaaaagtgagtttatggttttacaagtttttaattgtcttgcgcaatgcgagattaggttttggattcaaatgtttaac
14690267
T
Q
311
ggtgattatggtatcttgaatcctcacgaacttctttgttgaaatta
357
Q
|||||||||||||||||||||||||||||||||||||||||||||||
T
14690266
ggtgattatggtatcttgaatcctcacgaacttctttgttgaaatta
14690220
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 286
Target Start/End: Original strand, 11997108 - 11997140
Alignment:
Q
254
caagtttttaattgtcttgcgcaatgcgagatt
286
Q
|||||||||||||||||||| ||||||||||||
T
11997108
caagtttttaattgtcttgctcaatgcgagatt
11997140
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 192 - 325
Target Start/End: Original strand, 20488411 - 20488543
Alignment:
Q
192
aacttagcaatcaacagaatttaattgtttataagagcagtaaaagtgagtttatggttttacaagtttttaattgtcttgcgcaatgcgagattaggtt
291
Q
|||||||||||||||| |||||| |||||||||| |||| | |||| |||||||||||||| |||||||| || |||||||| ||||| |||||| ||
T
20488411
aacttagcaatcaacataatttatttgtttataaaagcaat-aaagagagtttatggttttgcaagttttgaaatgtcttgcataatgcaagattatatt
20488509
T
Q
292
ttggattcaaatgtttaacggtgattatggtatc
325
Q
| ||||| || ||||||| |||||| ||||||
T
20488510
tgtaattcagatatttaacgatgattagggtatc
20488543
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 259 - 311
Target Start/End: Complemental strand, 24189127 - 24189073
Alignment:
Q
259
ttttaattgtcttgcgcaatgcgagattaggttt--tggattcaaatgtttaacg
311
Q
||||||||||| |||||||||||||||||||||| | |||||| ||||||||||
T
24189127
ttttaattgtcatgcgcaatgcgagattaggtttggttgattcagatgtttaacg
24189073
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 161 - 281
Target Start/End: Original strand, 15415920 - 15416038
Alignment:
Q
161
taagttatcgtctccatgtatattgatgttcaacttagcaatcaacagaatttaattgtttataagagcagtaaaagtgagtttatggttttacaagttt
260
Q
||||||||||||||||| | |||| ||||||||||||||| |||| |||||| |||||||||| |||||| |||| || ||||| | ||| |||||||
T
15415920
taagttatcgtctccatagagattgtcgttcaacttagcaattaacaaaatttatttgtttataaaagcagt-aaagagaatttatag-tttgcaagttt
15416017
T
Q
261
ttaattgtcttgcgcaatgcg
281
Q
| |||||| |||| |||||||
T
15416018
tgaattgtattgcacaatgcg
15416038
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 244 - 292
Target Start/End: Original strand, 14932335 - 14932383
Alignment:
Q
244
tatggttttacaagtttttaattgtcttgcgcaatgcgagattaggttt
292
Q
||||| ||| |||||||||||||||||||| ||||||||||||||||||
T
14932335
tatgggtttgcaagtttttaattgtcttgcacaatgcgagattaggttt
14932383
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 262 - 327
Target Start/End: Original strand, 17331617 - 17331682
Alignment:
Q
262
taattgtcttgcgcaatgcgagattaggttttggattcaaatgtttaacggtgattatggtatctt
327
Q
||||||||||| |||||| ||||||||||||| ||||| ||||||||||||| ||| ||||||||
T
17331617
taattgtcttgtgcaatgtgagattaggtttttaattcagatgtttaacggtggttagggtatctt
17331682
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 333
Target Start/End: Original strand, 22557986 - 22558064
Alignment:
Q
258
tttttaattgtcttgcgcaatgcgagattaggtt--ttggattcaaatgtttaacggtgattatggta-tcttgaatcc
333
Q
|||||||||||| ||| |||||||||||||| || | |||||||||||||||||||||||| |||| ||||||||||
T
22557986
tttttaattgtcgtgcacaatgcgagattagattggtctgattcaaatgtttaacggtgattagggtattcttgaatcc
22558064
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 310
Target Start/End: Complemental strand, 25189298 - 25189247
Alignment:
Q
259
ttttaattgtcttgcgcaatgcgagattaggttttggattcaaatgtttaac
310
Q
||||||||| |||||||||| ||| |||||||||| ||||||||||||||||
T
25189298
ttttaattgacttgcgcaatacgaaattaggtttttgattcaaatgtttaac
25189247
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 327
Target Start/End: Original strand, 19218151 - 19218218
Alignment:
Q
260
tttaattgtcttgcgcaatgcgagattaggttttggattcaaatgtttaacggtgattatggtatctt
327
Q
|||||||||||||| ||||| |||||||||||| |||||| || |||||||| ||||| || |||||
T
19218151
tttaattgtcttgccaaatgcaagattaggtttttgattcagatatttaacggcgattaaggaatctt
19218218
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 285
Target Start/End: Complemental strand, 13253910 - 13253870
Alignment:
Q
245
atggttttacaagtttttaattgtcttgcgcaatgcgagat
285
Q
|||| ||| |||||||||||||||| |||||||||||||||
T
13253910
atggatttgcaagtttttaattgtcctgcgcaatgcgagat
13253870
T
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Target Overview ] [
Alignment Overview ]
© Oklahoma State University
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