View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9327-LTR4-TNT-insertion-9 (Length: 365)

Name: F9327-LTR4-TNT-insertion-9
Description: F9327-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9327-LTR4-TNT-insertion-9
F9327-LTR4-TNT-insertion-9
[»] chr5 (2 HSPs)
chr5 (11-357)||(14690220-14690566)
chr5 (254-286)||(11997108-11997140)
[»] chr2 (2 HSPs)
chr2 (192-325)||(20488411-20488543)
chr2 (259-311)||(24189073-24189127)
[»] chr1 (2 HSPs)
chr1 (161-281)||(15415920-15416038)
chr1 (244-292)||(14932335-14932383)
[»] chr4 (1 HSPs)
chr4 (262-327)||(17331617-17331682)
[»] chr6 (1 HSPs)
chr6 (258-333)||(22557986-22558064)
[»] chr3 (2 HSPs)
chr3 (259-310)||(25189247-25189298)
chr3 (260-327)||(19218151-19218218)
[»] chr7 (1 HSPs)
chr7 (245-285)||(13253870-13253910)


Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 11 - 357
Target Start/End: Complemental strand, 14690566 - 14690220
Alignment:
Q  11 tgcaagtatgtgaagctgtatccattttatgtgacaaatgacatcgtgttttgcattttatatggttgatcacactagtatttaaaaattatataaataa 110  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14690566 tgcaagtatgtgaagctgtatccattttatgtgacaaatgacgtcgtgttttgcattttatatggttgatcacactagtatttaaaaattatataaataa 14690467  T
Q  111 cnnnnnnnttgatggacgaattgttaaatgcccaaatcgcaagaaagtaataagttatcgtctccatgtatattgatgttcaacttagcaatcaacagaa 210  Q
    |       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14690466 caaaaaaattgatggacgaattgttaaatgcccaaatcgcaagaaagtaataagttatcgtctccatgtatattgatgttcaacttagcaatcaacagaa 14690367  T
Q  211 tttaattgtttataagagcagtaaaagtgagtttatggttttacaagtttttaattgtcttgcgcaatgcgagattaggttttggattcaaatgtttaac 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14690366 tttaattgtttataagagcagtaaaagtgagtttatggttttacaagtttttaattgtcttgcgcaatgcgagattaggttttggattcaaatgtttaac 14690267  T
Q  311 ggtgattatggtatcttgaatcctcacgaacttctttgttgaaatta 357  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  14690266 ggtgattatggtatcttgaatcctcacgaacttctttgttgaaatta 14690220  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 286
Target Start/End: Original strand, 11997108 - 11997140
Alignment:
Q  254 caagtttttaattgtcttgcgcaatgcgagatt 286  Q
    |||||||||||||||||||| ||||||||||||    
T  11997108 caagtttttaattgtcttgctcaatgcgagatt 11997140  T

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Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 192 - 325
Target Start/End: Original strand, 20488411 - 20488543
Alignment:
Q  192 aacttagcaatcaacagaatttaattgtttataagagcagtaaaagtgagtttatggttttacaagtttttaattgtcttgcgcaatgcgagattaggtt 291  Q
    |||||||||||||||| |||||| |||||||||| |||| | |||| |||||||||||||| |||||||| || ||||||||  ||||| ||||||  ||    
T  20488411 aacttagcaatcaacataatttatttgtttataaaagcaat-aaagagagtttatggttttgcaagttttgaaatgtcttgcataatgcaagattatatt 20488509  T
Q  292 ttggattcaaatgtttaacggtgattatggtatc 325  Q
    |   ||||| || ||||||| |||||| ||||||    
T  20488510 tgtaattcagatatttaacgatgattagggtatc 20488543  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 259 - 311
Target Start/End: Complemental strand, 24189127 - 24189073
Alignment:
Q  259 ttttaattgtcttgcgcaatgcgagattaggttt--tggattcaaatgtttaacg 311  Q
    ||||||||||| ||||||||||||||||||||||  | |||||| ||||||||||    
T  24189127 ttttaattgtcatgcgcaatgcgagattaggtttggttgattcagatgtttaacg 24189073  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 161 - 281
Target Start/End: Original strand, 15415920 - 15416038
Alignment:
Q  161 taagttatcgtctccatgtatattgatgttcaacttagcaatcaacagaatttaattgtttataagagcagtaaaagtgagtttatggttttacaagttt 260  Q
    |||||||||||||||||  | ||||  ||||||||||||||| |||| |||||| |||||||||| |||||| |||| || ||||| | ||| |||||||    
T  15415920 taagttatcgtctccatagagattgtcgttcaacttagcaattaacaaaatttatttgtttataaaagcagt-aaagagaatttatag-tttgcaagttt 15416017  T
Q  261 ttaattgtcttgcgcaatgcg 281  Q
    | |||||| |||| |||||||    
T  15416018 tgaattgtattgcacaatgcg 15416038  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 244 - 292
Target Start/End: Original strand, 14932335 - 14932383
Alignment:
Q  244 tatggttttacaagtttttaattgtcttgcgcaatgcgagattaggttt 292  Q
    ||||| ||| |||||||||||||||||||| ||||||||||||||||||    
T  14932335 tatgggtttgcaagtttttaattgtcttgcacaatgcgagattaggttt 14932383  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 262 - 327
Target Start/End: Original strand, 17331617 - 17331682
Alignment:
Q  262 taattgtcttgcgcaatgcgagattaggttttggattcaaatgtttaacggtgattatggtatctt 327  Q
    ||||||||||| |||||| |||||||||||||  ||||| ||||||||||||| ||| ||||||||    
T  17331617 taattgtcttgtgcaatgtgagattaggtttttaattcagatgtttaacggtggttagggtatctt 17331682  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 333
Target Start/End: Original strand, 22557986 - 22558064
Alignment:
Q  258 tttttaattgtcttgcgcaatgcgagattaggtt--ttggattcaaatgtttaacggtgattatggta-tcttgaatcc 333  Q
    |||||||||||| ||| |||||||||||||| ||  |  |||||||||||||||||||||||| |||| ||||||||||    
T  22557986 tttttaattgtcgtgcacaatgcgagattagattggtctgattcaaatgtttaacggtgattagggtattcttgaatcc 22558064  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 310
Target Start/End: Complemental strand, 25189298 - 25189247
Alignment:
Q  259 ttttaattgtcttgcgcaatgcgagattaggttttggattcaaatgtttaac 310  Q
    ||||||||| |||||||||| ||| |||||||||| ||||||||||||||||    
T  25189298 ttttaattgacttgcgcaatacgaaattaggtttttgattcaaatgtttaac 25189247  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 327
Target Start/End: Original strand, 19218151 - 19218218
Alignment:
Q  260 tttaattgtcttgcgcaatgcgagattaggttttggattcaaatgtttaacggtgattatggtatctt 327  Q
    ||||||||||||||  ||||| |||||||||||| |||||| || |||||||| ||||| || |||||    
T  19218151 tttaattgtcttgccaaatgcaagattaggtttttgattcagatatttaacggcgattaaggaatctt 19218218  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 285
Target Start/End: Complemental strand, 13253910 - 13253870
Alignment:
Q  245 atggttttacaagtttttaattgtcttgcgcaatgcgagat 285  Q
    |||| ||| |||||||||||||||| |||||||||||||||    
T  13253910 atggatttgcaagtttttaattgtcctgcgcaatgcgagat 13253870  T

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