View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9328-LTR4-TNT-insertion-1 (Length: 878)
Name: F9328-LTR4-TNT-insertion-1
Description: F9328-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9328-LTR4-TNT-insertion-1 |
 | |
|
| [»] chr7 (12 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 865; Significance: 0; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 865; E-Value: 0
Query Start/End: Original strand, 10 - 878
Target Start/End: Complemental strand, 6088788 - 6087920
Alignment:
| Q |
10 |
tgagtttgacaaagatgagttgatcatgaagcttgttgacaataaactgataaatgggaataagtgtttggaagaaatatttgatgatgggaataccata |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6088788 |
tgagtttgacaaagatgagttgatcatgaagcttgttgacaataaactgataaatgggaataagtgtttggaagaaatatttgatgatgggaataccata |
6088689 |
T |
|
| Q |
110 |
tttgataagctcaaagcccacagtctgatgagtagttcacattattcatctgtatacaattatcgcttggtgatagacatggcatgttatatcatgaaag |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6088688 |
tttgataagctcaaagcccacagtctgatgagtagttcacattattcatctgtatacaattatcgcttggtgatagacatggcatgttatatcatgaaag |
6088589 |
T |
|
| Q |
210 |
agagtaagcgaaatgctatggtgaaattcggtaacgaattgaccaagagagccattacacaggaatgggcagatgatttagagttggttcatttgtggag |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6088588 |
agagtaagcgaaatgctatggtgaaattcggtaacgaattgaccaagagagccattacacaggaatgggcagatgatttagagttggttcatttgtggag |
6088489 |
T |
|
| Q |
310 |
ttgtgatatagaagaaattccagagagcattgcaccttattgtcagaggttgtccaccttggtcataaataaattgtctattagtcatgttccagagagt |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6088488 |
ttgtgatatagaagaaattccagagagcattgcaccttattgtcagaggttgtccaccttggtcataaataaattgtctattagtcatgttccagagagt |
6088389 |
T |
|
| Q |
410 |
tttttcgaatacatagataatctaacaatactcgatctatccaataataaaaaactagaatctttgcctaactctatcactaagttgatatctcttgttt |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6088388 |
tttttcgaatacatagataatctaacaatactcgatctatccaataataaaaaactagaatctttgcctaactctatcactaagttgatatctcttgttt |
6088289 |
T |
|
| Q |
510 |
ctttagtactaacaggatgtcattcacttacacatgtgcccccagtgggagaactatggtcattgtcaagattggtcatttcagactgttccattaaaga |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6088288 |
ctttagtactaacaggatgtcattcacttacacatgtgcccccagtgggagaactatggtcattgtcaagattggtcatttcagactgttccattaaaga |
6088189 |
T |
|
| Q |
610 |
agcaccacaaggcttggataaactacatttgaaatggcttgatctatcccacaataagagcttgaatttggaattaggatctttgaatttgaacgaaatg |
709 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6088188 |
agcaccacaaggcttggataaactacatttgaaatggcttgatctatcccacaataagagcttgaatttggaattaggatctttgaatttgaacgaaatg |
6088089 |
T |
|
| Q |
710 |
caatacctggatctccaagatactcttgcaatgattacagtagaagatattcaaaggatgaatatgttggaatgtttaggagtcgcctttgactgtaaac |
809 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6088088 |
caatacctggatctccaagatactcttgcaatgattacagtagaagatattcaaaggatgaatatgttggaatgtttaggagtcgcctttgactgtaaac |
6087989 |
T |
|
| Q |
810 |
attacaaccagtacatgcagaaaaatcttgacatgagttttgacctcaaaacatatcatttcaaatttg |
878 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6087988 |
attacaaccagtacatgcagaaaaatcttgacatgagttttgacctcaaaacatatcatttcagatttg |
6087920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 18 - 814
Target Start/End: Complemental strand, 6207877 - 6207078
Alignment:
| Q |
18 |
acaaagatgagttgatcatgaagcttgttgacaataaactgataaatgggaataagtgtttggaagaaatatttgatgatgggaataccatatttgataa |
117 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| || |||||||| ||||| || | ||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
6207877 |
acaaagatgagttgatcatgaagctagttgacaatggacagataaatgagaatatgtctctggaagaaatatttgatgaagggaataccatattgagtaa |
6207778 |
T |
|
| Q |
118 |
gctcaaagcccacagtctgatgagtagttcacattattcatctgtatacaattatcgcttggtgatagacatggcatgttatatcatgaaagagagtaag |
217 |
Q |
| |
|
||| || |||| | |||| ||| | | || |||| || ||||||| ||| ||| |||| | ||||||| ||||||||| |||||||| || | |
|
|
| T |
6207777 |
gcttgaatcccattctttgattagttctactaataattcttcggtatacacacatcccttagtgagaaacatggcctgttatatcttgaaagagtgtcaa |
6207678 |
T |
|
| Q |
218 |
cgaaatgctatggtgaaattcggtaacgaattgaccaagagagccattacacaggaatgggcagatgatttagagttggttcatttgtggagttgtgata |
317 |
Q |
| |
|
| |||| ||| || || || ||| ||||||| ||| | | | |||| ||||||| ||||||||||||||||||| || || || ||| | |
|
|
| T |
6207677 |
aggaatgttatagtaaagttgaataagagattgaccgagatacctctctcacacagatgggcaactgatttagagttggttcatatgcgggattatgaca |
6207578 |
T |
|
| Q |
318 |
tagaagaaattccagagagcattgcaccttattgtcagaggttgtccaccttggtcataaataaattgtctattagtcatgttccagagagttttttcga |
417 |
Q |
| |
|
|||||||||| ||||| |||| ||||| |||||| || ||||| | ||||| | ||||| ||||||| ||||||| |||||||||||||||||| |
|
|
| T |
6207577 |
tagaagaaatcccagaaggcatgtcacctaattgtccgaagttgttcgccttgattttaaatgaattgtccattagtcgtgttccagagagtttttttat |
6207478 |
T |
|
| Q |
418 |
atacatagataatctaacaatactcgatctatccaataataaaaaactagaatctttgcctaactctatcactaagttgatatctcttgtttctttagta |
517 |
Q |
| |
|
|| || |||||||| ||||||| ||| |||| ||||| || | |||||||||||||| |||| ||||||||||||| ||||||||||||||| || |
|
|
| T |
6207477 |
gtatatgaataatctatcaatactggatttatcatataatgaagacctagaatctttgccagactccatcactaagttgaggtctcttgtttctttaata |
6207378 |
T |
|
| Q |
518 |
ctaacaggatgtcattcacttacacatgtgcccccagtgggagaactatggtcattgtcaagattggtcatttcagactgttccattaaagaagcaccac |
617 |
Q |
| |
|
|||| ||||||| ||||||| | ||||||||||||| |||||||| || | |||||||||||||||||||||| || ||| ||| ||||| |
|
|
| T |
6207377 |
ctaaaaggatgtgattcactgaaacatgtgcccccattgggagaattacagagattgtcaagattggtcatttcaaacacttctattggagaag---tta |
6207281 |
T |
|
| Q |
618 |
aaggcttggataaac---tacatttgaaatggcttgatctatcccacaataagagcttgaatttggaattaggatctttg---aatttgaacgaaatgca |
711 |
Q |
| |
|
|||||||||| |||| || | ||||| |||||||||||||| ||||||||| ||||||||||||||||| |||||| ||||||| | ||||||| |
|
|
| T |
6207280 |
aaggcttggaaaaactaataaaattgaagtggcttgatctatcatgcaataagagtttgaatttggaattagggtctttgtccaatttgaccaaaatgca |
6207181 |
T |
|
| Q |
712 |
atacctggatctccaagatactcttgcaatgattacagtagaagatattcaaaggatgaatatgttggaatgtttaggagtcgcctttgactgtaaacat |
811 |
Q |
| |
|
||| || ||||| | | |||| ||| ||||| | ||| ||||| ||||| | ||||||||| |||||||||| |||| | |||||||||| ||| || |
|
|
| T |
6207180 |
atatcttgatcttcgaaatacctgtgctatgatggcggtaaaagatgttcaaggaatgaatatgctggaatgttttggaggcacctttgactgcaaagat |
6207081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 18 - 814
Target Start/End: Complemental strand, 6234295 - 6233496
Alignment:
| Q |
18 |
acaaagatgagttgatcatgaagcttgttgacaataaactgataaatgggaataagtgtttggaagaaatatttgatgatgggaataccatatttgataa |
117 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| || |||||||| ||||| || | ||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
6234295 |
acaaagatgagttgatcatgaagctagttgacaatggacagataaatgagaatatgtctctggaagaaatatttgatgaagggaataccatattgagtaa |
6234196 |
T |
|
| Q |
118 |
gctcaaagcccacagtctgatgagtagttcacattattcatctgtatacaattatcgcttggtgatagacatggcatgttatatcatgaaagagagtaag |
217 |
Q |
| |
|
||| || |||| | |||| ||| | | || |||| || ||||||| ||| ||| |||| | ||||||| ||||||||| |||||||| || | |
|
|
| T |
6234195 |
gcttgaatcccattctttgattagttctactaataattcttcggtatacacacatcccttagtgagaaacatggcctgttatatcttgaaagagtgtcaa |
6234096 |
T |
|
| Q |
218 |
cgaaatgctatggtgaaattcggtaacgaattgaccaagagagccattacacaggaatgggcagatgatttagagttggttcatttgtggagttgtgata |
317 |
Q |
| |
|
| |||| ||| || || || ||| ||||||| ||| | | | |||| ||||||| ||||||||||||||||||| || || || ||| | |
|
|
| T |
6234095 |
aggaatgttatagtaaagttgaataagagattgaccgagatacctctctcacacagatgggcaactgatttagagttggttcatatgcgggattatgaca |
6233996 |
T |
|
| Q |
318 |
tagaagaaattccagagagcattgcaccttattgtcagaggttgtccaccttggtcataaataaattgtctattagtcatgttccagagagttttttcga |
417 |
Q |
| |
|
|||||||||| ||||| |||| ||||| |||||| || ||||| | ||||| | ||||| ||||||| ||||||| |||||||||||||||||| |
|
|
| T |
6233995 |
tagaagaaatcccagaaggcatgtcacctaattgtccgaagttgttcgccttgattttaaatgaattgtccattagtcgtgttccagagagtttttttat |
6233896 |
T |
|
| Q |
418 |
atacatagataatctaacaatactcgatctatccaataataaaaaactagaatctttgcctaactctatcactaagttgatatctcttgtttctttagta |
517 |
Q |
| |
|
|| || |||||||| ||||||| ||| |||| ||||| || | |||||||||||||| |||| ||||||||||||| ||||||||||||||| || |
|
|
| T |
6233895 |
gtatatgaataatctatcaatactggatttatcatataatgaagacctagaatctttgccagactccatcactaagttgaggtctcttgtttctttaata |
6233796 |
T |
|
| Q |
518 |
ctaacaggatgtcattcacttacacatgtgcccccagtgggagaactatggtcattgtcaagattggtcatttcagactgttccattaaagaagcaccac |
617 |
Q |
| |
|
|||| ||||||| ||||||| | ||||||||||||| |||||||| || | |||||||||||||||||||||| || ||| ||| ||||| |
|
|
| T |
6233795 |
ctaaaaggatgtgattcactgaaacatgtgcccccattgggagaattacagagattgtcaagattggtcatttcaaacacttctattggagaag---tta |
6233699 |
T |
|
| Q |
618 |
aaggcttggataaac---tacatttgaaatggcttgatctatcccacaataagagcttgaatttggaattaggatctttg---aatttgaacgaaatgca |
711 |
Q |
| |
|
|||||||||| |||| || | ||||| |||||||||||||| ||||||||| ||||||||||||||||| |||||| ||||||| | ||||||| |
|
|
| T |
6233698 |
aaggcttggaaaaactaataaaattgaagtggcttgatctatcatgcaataagagtttgaatttggaattagggtctttgtccaatttgaccaaaatgca |
6233599 |
T |
|
| Q |
712 |
atacctggatctccaagatactcttgcaatgattacagtagaagatattcaaaggatgaatatgttggaatgtttaggagtcgcctttgactgtaaacat |
811 |
Q |
| |
|
||| || ||||| | | |||| ||| ||||| | ||| ||||| ||||| | ||||||||| |||||||||| |||| | |||||||||| ||| || |
|
|
| T |
6233598 |
atatcttgatcttcgaaatacctgtgctatgatggcggtaaaagatgttcaaggaatgaatatgctggaatgttttggaggcacctttgactgcaaagat |
6233499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 267 - 851
Target Start/End: Complemental strand, 6246911 - 6246318
Alignment:
| Q |
267 |
cacaggaatgggcagatgatttagagttggttcatttgtggagttgtgatatagaagaaattccagagagcattgcaccttattgtcagaggttgtccac |
366 |
Q |
| |
|
|||| |||||||||| | | ||||| || |||||| ||||| |||||||||||| | ||| |||||| |||| ||||| |||||| | |||||||| |
|
|
| T |
6246911 |
cacatgaatgggcagctaaattagaattagttcatatgtggggttgtgatataggaccaatcccagagggcatgtcacctaattgtccaaacttgtccac |
6246812 |
T |
|
| Q |
367 |
cttggtcataaataaattgtctattagtcatgttccagagagttttttcgaatacatagataatctaacaatactcgatctatccaataataaaaaacta |
466 |
Q |
| |
|
|||| | ||||||| | |||| |||||||||||||| |||||||||||| |||| || ||| | || ||||||| ||| ||||| ||||||||| ||| |
|
|
| T |
6246811 |
cttgattataaatagagtgtccattagtcatgttcctgagagttttttcaaatatatgaatagtttatcaatactagatatatcctataataaaaggcta |
6246712 |
T |
|
| Q |
467 |
gaatctttgcctaactctatcactaagttgatatctcttgtttctttagtactaacaggatgtcattcacttacacatgtgcccccagtgggagaactat |
566 |
Q |
| |
|
||||| ||||| |||||| | | | | |||| |||||| || ||||||| || | | | ||| ||||| | | |||||| || ||| ||||||||||| |
|
|
| T |
6246711 |
gaatcattgccaaactctgtgagtgaattgaggtctcttattactttagtgctcaaaagttgttattcattgaaacatgttccaccattgggagaactac |
6246612 |
T |
|
| Q |
567 |
ggtcattgtcaagattggtcatttcagactgttccattaaagaagcaccacaaggcttggataaactac---atttgaaatggcttgatctatcccacaa |
663 |
Q |
| |
|
||||||||||||||||||||||| | ||||||| | |||||||||||||| ||||| |||||| |||||||||||||||||||||| ||| |
|
|
| T |
6246611 |
aagcattgtcaagattggtcatttcaaaaacttccattgaggaagcaccacaaggattggaaaaactaatcaatttgaaatggcttgatctatctagcaa |
6246512 |
T |
|
| Q |
664 |
taagagcttgaatttggaattaggatctttg------aatttgaacgaaatgcaatacctggatctccaagatactcttgcaatgattacagtagaagat |
757 |
Q |
| |
|
||| | || ||| |||| | | ||||| ||| ||| |||| |||||||| |||||||| |||| ||| |||||| ||| |||||| |
|
|
| T |
6246511 |
caagtgtttaaatatggatacaaggtcttttttatccaatctgactaaaatacaatacctcaatctccaacataccaatgctttgattaaagttgaagat |
6246412 |
T |
|
| Q |
758 |
attcaaaggatgaatatgttggaatgtttaggagtcgcctttgactgtaaacattacaaccagtacatgcagaaaaatcttgacatgagttttg |
851 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| || ||||||||| ||| || |||| || |||||||| |||||||||||||||||||||| |
|
|
| T |
6246411 |
attcaaaggatgaatatgttagaatgtttaggaggcggctttgactgcaaagatcacaaacaatacatgcaaaaaaatcttgacatgagttttg |
6246318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 10 - 852
Target Start/End: Complemental strand, 6105938 - 6105090
Alignment:
| Q |
10 |
tgagtttgacaaagatgagttgatcatgaagcttgttgacaataaactgataaatgggaataagtgtttggaagaaatatttgatgatgggaataccata |
109 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||| || |||||||| | || |||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
6105938 |
tgagtttgaaaaagatgagttgatcatgaagctagttgatcatgggaagataaatgatagtatgtgtttggaagaaatatttgttgaagggaataccata |
6105839 |
T |
|
| Q |
110 |
tttgataagctcaaagcccacagtctgatgagtagttcacattattcatctgtatacaattatcgcttggtgatagacatggcatgttatatcatgaaag |
209 |
Q |
| |
|
|| | ||||| ||| |||| | |||| ||||| ||||||| | ||| || ||| |||||||| | | |||||||||||||| ||||| |
|
|
| T |
6105838 |
ttgaaaaagcttaaatcccattctttgat---tagttttcattattatttagtagccacacatcccttggtgagaaatatggcatgttatatatggaaag |
6105742 |
T |
|
| Q |
210 |
agagtaagcgaaatgctatggtgaaattcggtaacgaattgaccaagagagccattacacaggaatgggcagatgatttagagttggttcatttgtggag |
309 |
Q |
| |
|
||||| || | |||||||| |||| || ||||| | ||||||||||| | |||| ||||||||| ||||||||||||||||||| || || |
|
|
| T |
6105741 |
agagtcagaggaatgctatagtgagatcgggtaaaggattgaccaagatgcatctctcacatgaatgggcaactgatttagagttggttcatatgcggga |
6105642 |
T |
|
| Q |
310 |
ttgtgatatagaagaaattccagagagcattgcaccttattgtcagaggttgtccaccttggtcataaataaattgtctattagtcatgttccagagagt |
409 |
Q |
| |
|
|| ||| ||||||||||| ||||| |||| ||||| |||||| || ||||| | ||||| | ||||| ||||||| ||||||| ||||||||||||| |
|
|
| T |
6105641 |
ttatgacatagaagaaatcccagaaggcatgtcacctaattgtccgaagttgttcgccttgattttaaatgaattgtccattagtcgtgttccagagagt |
6105542 |
T |
|
| Q |
410 |
tttttcgaatacatagataatctaacaatactcgatctatccaataataaaaaactagaatctttgcctaactctatcactaagttgatatctcttgttt |
509 |
Q |
| |
|
||||| || || |||||||| ||||||| ||| |||| ||||| || | |||||||||||||| |||| ||||||||||||| |||||||||| |
|
|
| T |
6105541 |
ttttttatgtatatgaataatctatcaatactggatttatcatataatgaagacctagaatctttgccagactccatcactaagttgaggtctcttgttt |
6105442 |
T |
|
| Q |
510 |
ctttagtactaacaggatgtcattcacttacacatgtgcccccagtgggagaactatggtcattgtcaagattggtcatttcagactgttccattaaaga |
609 |
Q |
| |
|
||||||| || | | ||||| |||||| | ||||||||||||| |||||||| || |||||||||||||||||||||| | ||||||| | | |
|
|
| T |
6105441 |
ctttagttctcaaaagatgtgcttcactgatacatgtgcccccattgggagaattacaagcattgtcaagattggtcatttcggtgacttccattgagaa |
6105342 |
T |
|
| Q |
610 |
agcaccacaaggcttggataaacta---catttgaaatggcttgatctatcccacaataagagcttgaatttggaattaggatcttt------gaatttg |
700 |
Q |
| |
|
| ||||| ||||||||| |||||| ||||||||||||||||||||||| | || | ||| |||||||| ||||| | ||||| ||||| |
|
|
| T |
6105341 |
attaccactaggcttggaaaaactaaccaatttgaaatggcttgatctatccaaaaacatgagtttgaatttagaattgaggtctttttcatcctatttg |
6105242 |
T |
|
| Q |
701 |
aacgaaatgcaatacctggatctccaagatactcttgcaatgattacagtagaagatattcaaaggatgaatatgttggaatgtttaggagtcgcctttg |
800 |
Q |
| |
|
| || |||||||||| ||||||| |||||||| ||| | | || || |||||| ||||| ||||||||||| | |||||||| |||| |||||||| |
|
|
| T |
6105241 |
attaaattgcaatacctcgatctccgagatactcatgctctaaatatggttgaagatgttcaagggatgaatatgcttgaatgttttggaggcgcctttg |
6105142 |
T |
|
| Q |
801 |
actgtaaacattacaaccagtacatgcagaaaaatcttgacatgagttttga |
852 |
Q |
| |
|
||| | | || | |||| | |||||| || || ||||||||||||||||| |
|
|
| T |
6105141 |
actacagatgtttctaccaatccatgcaaaataaccttgacatgagttttga |
6105090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 18 - 657
Target Start/End: Complemental strand, 6180327 - 6179685
Alignment:
| Q |
18 |
acaaagatgagttgatcatgaagcttgttgacaataaactgataaatgggaataagtgtttggaagaaatatttgatgatgggaataccatatttgataa |
117 |
Q |
| |
|
||||||||||||||||||||||||| ||||| || || |||||||||| || |||||||||||||||||||||||| |||||| ||||||| | || |
|
|
| T |
6180327 |
acaaagatgagttgatcatgaagctagttgatcatggacatataaatgggagtatgtgtttggaagaaatatttgatgaggggaatgccatattgaagaa |
6180228 |
T |
|
| Q |
118 |
gctcaaagcccacagtctgatgagtagttcacattattcatctgtatacaattatcgcttggtgatagacatggcatgttatatcatgaaagagagtaag |
217 |
Q |
| |
|
||| || |||| | |||| ||| | | || |||| || ||||||| ||| ||| |||| | ||||||| ||||||||| ||||||||||| || |
|
|
| T |
6180227 |
gcttgaatcccattctttgattagttctactaataattcttcggtatacacacatcccttagtgagaaacatggcctgttatatcttgaaagagagtcag |
6180128 |
T |
|
| Q |
218 |
cgaaatgctatggtgaaattcggtaacgaattgaccaagagagccattacacaggaatgggcagatgatttagagttggttcatttgtggagttgtgata |
317 |
Q |
| |
|
|||||||||||||||| || | | ||||| ||| | | | |||| | ||||||| ||||||||||||||||||| || ||||||| |
|
|
| T |
6180127 |
agaaatgctatggtgaagttgaatgagatattgattgagatacctctctcacatggatgggcaactgatttagagttggttcatatgcaagattgtgatc |
6180028 |
T |
|
| Q |
318 |
tagaagaaattccagagagcattgcaccttattgtcagaggttgtccaccttggtcataaataaattgtctattagtcatgttccagagagttttttcga |
417 |
Q |
| |
|
|||||||||| |||||| |||| ||||| |||||| || | ||||||||||| | ||||||||| |||||||||| || |||||||| |||||||| | |
|
|
| T |
6180027 |
tagaagaaatcccagagggcatgtcacctgattgtccgaagctgtccaccttgattataaataaagtgtctattagatatattccagagtgttttttcaa |
6179928 |
T |
|
| Q |
418 |
atacatagataatctaacaatactcgatctatccaataataaaaaactagaatctttgcctaactctatcactaagttgatatctcttgtttctttagta |
517 |
Q |
| |
|
||| || ||| | || ||||||| ||||||||| ||||| ||| |||||||| ||||| |||||| ||| | | |||| |||||| ||||||||||| |
|
|
| T |
6179927 |
atatatgaatattttatcaatactggatctatcctataatgaaaggctagaatcattgccaaactctgtcagtgaattgaggtctcttatttctttagta |
6179828 |
T |
|
| Q |
518 |
ctaacaggatgtcattcacttacacatgtgcccccagtgggagaactatggtcattgtcaagattggtcatttcagactgttccattaaagaagcaccac |
617 |
Q |
| |
|
|| ||||| || | | | ||||||||||||| ||||||||||| |||||||||||||| |||||||| ||||||| | |||||||||| |
|
|
| T |
6179827 |
ctctttagatgtgatagattgaaacatgtgcccccattgggagaactacaagcattgtcaagattgatcatttcatttacttccattgaggaagcaccac |
6179728 |
T |
|
| Q |
618 |
aaggcttggataaacta---catttgaaatggcttgatctatc |
657 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
6179727 |
aaggcttggaaaaactaaccaatttgaaatggcttgatctatc |
6179685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 283 - 657
Target Start/End: Complemental strand, 6093894 - 6093517
Alignment:
| Q |
283 |
tgatttagagttggttcatttgtggagttgtgatatagaagaaattccagagagcattgcaccttattgtcagaggttgtccaccttggtcataaataaa |
382 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||| ||||| ||| |||| ||||||| || | | ||||| || |||||||| || |
|
|
| T |
6093894 |
tgatttagagttggttcatatgtatgattgtgatatagaagaaatctcagaggacatgtcaccatattgtccgatgatatccactatgatcataaatgaa |
6093795 |
T |
|
| Q |
383 |
ttgtctattagtcatgttccagagagttttttcgaatacatagataatctaacaatactcgatctatccaataataaaaaactagaatctttgcctaact |
482 |
Q |
| |
|
| ||| ||||| ||||||||||||||||||||| | || || ||| | || ||||||| ||||||||| ||||| |||||| ||||||||||| || | |
|
|
| T |
6093794 |
tcgtcaattagacatgttccagagagttttttcaagtatatgaatagtgtatcaatactagatctatcctgtaatagaaaacttgaatctttgccaaatt |
6093695 |
T |
|
| Q |
483 |
ctatcactaagttgatatctcttgtttctttagtactaacaggatgtcattcacttacacatgtgcccccagtgggagaactatggtcattgtcaagatt |
582 |
Q |
| |
|
|||| |||||||||| |||||| ||||||| |||||||||||||| || |||| | | | | ||||| ||||||| ||| ||||||||||||| |
|
|
| T |
6093694 |
ctatgactaagttgaggtctcttatttctttgttactaacaggatgtaatacactaaaaaaaattcccccgttgggagagctacaagcattgtcaagatt |
6093595 |
T |
|
| Q |
583 |
ggtcatttcagactgttccattaaagaagcaccacaaggcttggataaacta---catttgaaatggcttgatctatc |
657 |
Q |
| |
|
||||||| || ||| ||||| | |||| ||||||||| ||||| || ||| | |||||||||||||||||||| |
|
|
| T |
6093594 |
ggtcattacattttgtgccattgaggaagtaccacaaggtttggaaaacctaatcaacttgaaatggcttgatctatc |
6093517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 741 - 868
Target Start/End: Complemental strand, 6176461 - 6176334
Alignment:
| Q |
741 |
tgattacagtagaagatattcaaaggatgaatatgttggaatgtttaggagtcgcctttgactgtaaacattacaaccagtacatgcagaaaaatcttga |
840 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||||||||||||||||| | ||||||||| ||| || ||||||| ||||||| ||||||||||| |
|
|
| T |
6176461 |
tgattaaagttgaagatattcaaaggatgaatatgttggaatgtttaggaggcagctttgactgcaaagatcacaaccaacacatgcaaaaaaatcttga |
6176362 |
T |
|
| Q |
841 |
catgagttttgacctcaaaacatatcat |
868 |
Q |
| |
|
|| ||| |||| ||||||||||||||| |
|
|
| T |
6176361 |
cacgagctttgggctcaaaacatatcat |
6176334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 6237173 - 6237071
Alignment:
| Q |
18 |
acaaagatgagttgatcatgaagcttgttgacaataaactgataaatgggaataagtgtttggaagaaatatttgatgatgggaataccatatttgataa |
117 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| || ||||||| ||||| || ||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
6237173 |
acaaagatgagttgatcatgaagctagttgacaatggacaaataaatgagaatatgtctttggaagaaatatttgatgaagggaataccatattgaataa |
6237074 |
T |
|
| Q |
118 |
gct |
120 |
Q |
| |
|
||| |
|
|
| T |
6237073 |
gct |
6237071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 15 - 120
Target Start/End: Complemental strand, 6247160 - 6247055
Alignment:
| Q |
15 |
ttgacaaagatgagttgatcatgaagcttgttgacaataaactgataaatgggaataagtgtttggaagaaatatttgatgatgggaataccatatttga |
114 |
Q |
| |
|
|||| ||||||||||||||||||||| | ||||||||| | |||||||||| || |||||||||||||||||||| ||| |||||||||||||| | |
|
|
| T |
6247160 |
ttgaaaaagatgagttgatcatgaagttagttgacaatgggcaaataaatgggagtatgtgtttggaagaaatatttgttgaagggaataccatattgaa |
6247061 |
T |
|
| Q |
115 |
taagct |
120 |
Q |
| |
|
|||||| |
|
|
| T |
6247060 |
taagct |
6247055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 117
Target Start/End: Complemental strand, 6094154 - 6094063
Alignment:
| Q |
26 |
gagttgatcatgaagcttgttgacaataaactgataaatgggaataagtgtttggaagaaatatttgatgatgggaataccatatttgataa |
117 |
Q |
| |
|
||||||||| ||||| ||||||||||| | ||||||||| |||| ||||||||| ||||||||| |||| ||||||||| |||| ||||| |
|
|
| T |
6094154 |
gagttgatcttgaagattgttgacaatggagtgataaatgaaaataggtgtttggaggaaatatttaatgaagggaataccgtattggataa |
6094063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 523 - 686
Target Start/End: Complemental strand, 6100359 - 6100196
Alignment:
| Q |
523 |
aggatgtcattcacttacacatgtgcccccagtgggagaactatggtcattgtcaagattggtcatttcagactgttccattaaagaagcaccacaaggc |
622 |
Q |
| |
|
||||||| ||||||| | ||||||||||||| |||||||| || | |||||||||||||||||||||| || ||| ||| ||||| ||||| |
|
|
| T |
6100359 |
aggatgtgattcactgaaacatgtgcccccattgggagaattacagagattgtcaagattggtcatttcaaacacttctattggagaag---ttaaaggc |
6100263 |
T |
|
| Q |
623 |
ttggataaac---tacatttgaaatggcttgatctatcccacaataagagcttgaatttggaattag |
686 |
Q |
| |
|
||||| |||| || | ||||| |||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
6100262 |
ttggaaaaactaataaaattgaagtggcttgatctatcatgcaataagagtttgaatttggaattag |
6100196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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