View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9328-LTR4-TNT-insertion-4 (Length: 260)

Name: F9328-LTR4-TNT-insertion-4
Description: F9328-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9328-LTR4-TNT-insertion-4
F9328-LTR4-TNT-insertion-4
[»] chr1 (1 HSPs)
chr1 (7-252)||(6478948-6479193)


Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 7 - 252
Target Start/End: Complemental strand, 6479193 - 6478948
Alignment:
Q  7 aaaatatgtcatcattttcaacaaatatgcaataccataccaagatatgacagtgttagaatttgaatggaggatttggttaactacttggaagataaat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6479193 aaaatatgtcatcattttcaacaaatatgcaataccataccaagatatgacagtgttagaatttgaatggaggatttggttaactacttggaagataaat 6479094  T
Q  107 tggttaagttgagaagaatggttactgagagtttaaccaaaagataggacatatgatatgattatttagtagttgaaagccattgagtttttcttgactt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6479093 tggttaagttgagaagaatggttactgagagtttaaccaaaagataggacatatgatatgattatttagtagttgaaagccattgagtttttcttgactt 6478994  T
Q  207 gggtgttagtattctatacattttattatttcaagatatattatta 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  6478993 gggtgttagtattctatacattttattatttcaagatatattatta 6478948  T

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