View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9328-LTR4-TNT-insertion-4 (Length: 260)
Name: F9328-LTR4-TNT-insertion-4
Description: F9328-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] F9328-LTR4-TNT-insertion-4 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 7 - 252
Target Start/End: Complemental strand, 6479193 - 6478948
Alignment:
Q |
7 |
aaaatatgtcatcattttcaacaaatatgcaataccataccaagatatgacagtgttagaatttgaatggaggatttggttaactacttggaagataaat |
106 |
Q |
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T |
6479193 |
aaaatatgtcatcattttcaacaaatatgcaataccataccaagatatgacagtgttagaatttgaatggaggatttggttaactacttggaagataaat |
6479094 |
T |
 |
Q |
107 |
tggttaagttgagaagaatggttactgagagtttaaccaaaagataggacatatgatatgattatttagtagttgaaagccattgagtttttcttgactt |
206 |
Q |
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T |
6479093 |
tggttaagttgagaagaatggttactgagagtttaaccaaaagataggacatatgatatgattatttagtagttgaaagccattgagtttttcttgactt |
6478994 |
T |
 |
Q |
207 |
gggtgttagtattctatacattttattatttcaagatatattatta |
252 |
Q |
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T |
6478993 |
gggtgttagtattctatacattttattatttcaagatatattatta |
6478948 |
T |
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