View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9328-LTR4-TNT-insertion-6 (Length: 356)
Name: F9328-LTR4-TNT-insertion-6
Description: F9328-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9328-LTR4-TNT-insertion-6 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 10 - 346
Target Start/End: Original strand, 42287834 - 42288171
Alignment:
| Q |
10 |
gtttgggtgttagtgaaggtgtatattgtatggcgcaggagactgcatgcacgtgagtacactgttcaaatgtagtacaaaaattgaaatgtttgaaggn |
109 |
Q |
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| T |
42287834 |
gtttgggtgttagtgaaggtgtatattgtatggcgcaggagactgcatgcacgtgagtacactgttcaaatgtagtacaaaaattgaaatgtttgaagga |
42287933 |
T |
|
| Q |
110 |
nnnnnn-tcaactttggttttagggaaccgtgcccataatcttttaacgttcacgtgtagtgaaacaacataataactttgttctcatatgaaatggatt |
208 |
Q |
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| T |
42287934 |
aaaaaaatcaactttggttttagggaaccgtgcccataatcttttaacgttcacgtgtagtgaaacaacataataactttgttctcatatgaaatggatt |
42288033 |
T |
|
| Q |
209 |
ggaggagatgctgggttttgttctctttcttgttagctatttctagttttcaaaattcaaatacatttccatgttctttttagcaatgggtccaaggtga |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42288034 |
ggaggagatgctgggttttgttctctttcttgttagctatttctagttttcaaaattcaaatacatttccatgttctttttagcaatgggtccaaggtga |
42288133 |
T |
|
| Q |
309 |
ctaatttccatgttactaacagaaaattctcttcatta |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
42288134 |
ctaatttccatgttactaacagaaaattctcttcatta |
42288171 |
T |
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