View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9328-LTR4-TNT-insertion-7 (Length: 715)
Name: F9328-LTR4-TNT-insertion-7
Description: F9328-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9328-LTR4-TNT-insertion-7 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 700; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 700; E-Value: 0
Query Start/End: Original strand, 7 - 706
Target Start/End: Original strand, 35410304 - 35411003
Alignment:
| Q |
7 |
acattcttccaatgggtagcaatgtttggcaaattgcagaaggcctcaactatagctgcacgtaatatgcctaatccattacttgacgttgttgctttaa |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35410304 |
acattcttccaatgggtagcaatgtttggcaaattgcagaaggcctcaactatagctgcacgtaatatgcctaatccattacttgacgttgttgctttaa |
35410403 |
T |
|
| Q |
107 |
acattgatgagtgaatttatcttcctcaccccaccccgtcctcataactcataatccccttgaaattactaatgtctgagtttcagaatccagactaggg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35410404 |
acattgatgagtgaatttatcttcctcaccccaccccgtcctcataactcataatccccttgaaattactaatgtctgagtttcagaatccagactaggg |
35410503 |
T |
|
| Q |
207 |
atgggcagttacaaacaaaccgattacaactgaccaaccaaatcgaaaacaacacacacggcgcaggtttcattgggttaatgggtggaataggtagttc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35410504 |
atgggcagttacaaacaaaccgattacaactgaccaaccaaatcgaaaacaacacacacggcgcaggtttcattgggttaatgggtggaataggtagttc |
35410603 |
T |
|
| Q |
307 |
ggtttgagcgattattttgaggccatcggtgaccgaagcgaaccattatcatatttttctcctaagcccaattctcccatgcccaaacccaaagatgttt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35410604 |
ggtttgagcgattattttgaggccatcggtgaccgaagcgaaccattatcatatttttctcctaagcccaattctcccatgcccaaacccaaagatgttt |
35410703 |
T |
|
| Q |
407 |
ccttttccactataaattgtaatgcttcaactcaaattgaagaaaatcttattgatggtcggtttaacaagtgtactaaattgttgtcaagtagtaaaat |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35410704 |
ccttttccactataaattgtaatgcttcaactcaaattgaagaaaatcttattgatggtcggtttaacaagtgtactaaattgttgtcaagtagtaaaat |
35410803 |
T |
|
| Q |
507 |
ttataaagttcttttccacattgattgtgaaattattatgttacaactacaaatatgattagaattatgagatttggggggtcggagttggcaatggttg |
606 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35410804 |
ttataaagttcttttccacattgattgtgaaattattatgttacaactacaaatatgattagaattatgagatttggggggtcggagttggcaatggttg |
35410903 |
T |
|
| Q |
607 |
ttttgacataaatgaaagaaactagagaaaacaatgattacgccgtgtttgatttccctctctttcaatgcttggtaactggctccaatgtctacaattg |
706 |
Q |
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|
| T |
35410904 |
ttttgacataaatgaaagaaactagagaaaacaatgattacgccgtgtttgatttccctctctttcaatgcttggtaactggctccaatgtctacaattg |
35411003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 469 - 513
Target Start/End: Original strand, 6021804 - 6021848
Alignment:
| Q |
469 |
tttaacaagtgtactaaattgttgtcaagtagtaaaatttataaa |
513 |
Q |
| |
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|||||||||| ||||||| | |||||||||||||||||||||||| |
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|
| T |
6021804 |
tttaacaagtttactaaaatattgtcaagtagtaaaatttataaa |
6021848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 475 - 512
Target Start/End: Original strand, 36443188 - 36443225
Alignment:
| Q |
475 |
aagtgtactaaattgttgtcaagtagtaaaatttataa |
512 |
Q |
| |
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|||||||||||||||| || |||||||||||||||||| |
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|
| T |
36443188 |
aagtgtactaaattgtcgttaagtagtaaaatttataa |
36443225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 475 - 512
Target Start/End: Original strand, 36466325 - 36466362
Alignment:
| Q |
475 |
aagtgtactaaattgttgtcaagtagtaaaatttataa |
512 |
Q |
| |
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|||||||||||||||| || |||||||||||||||||| |
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|
| T |
36466325 |
aagtgtactaaattgtcgttaagtagtaaaatttataa |
36466362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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