View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9329-LTR4-TNT-insertion-1 (Length: 368)

Name: F9329-LTR4-TNT-insertion-1
Description: F9329-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9329-LTR4-TNT-insertion-1
F9329-LTR4-TNT-insertion-1
[»] scaffold0210 (2 HSPs)
scaffold0210 (8-170)||(15462-15624)
scaffold0210 (252-358)||(15274-15380)
[»] chr7 (4 HSPs)
chr7 (311-358)||(6849701-6849748)
chr7 (311-355)||(30597268-30597312)
chr7 (312-355)||(6890138-6890181)
chr7 (312-352)||(32414626-32414666)
[»] chr3 (2 HSPs)
chr3 (319-353)||(7119804-7119838)
chr3 (311-355)||(7057897-7057941)
[»] chr8 (2 HSPs)
chr8 (319-355)||(27700940-27700976)
chr8 (319-353)||(35336721-35336755)
[»] chr5 (4 HSPs)
chr5 (311-355)||(25102531-25102575)
chr5 (311-355)||(25161625-25161669)
chr5 (311-355)||(25216876-25216920)
chr5 (311-355)||(25281031-25281075)
[»] chr4 (2 HSPs)
chr4 (322-355)||(36627304-36627337)
chr4 (319-355)||(52187796-52187832)
[»] chr1 (1 HSPs)
chr1 (311-355)||(28927486-28927530)


Alignment Details
Target: scaffold0210 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 8 - 170
Target Start/End: Complemental strand, 15624 - 15462
Alignment:
Q  8 tcaagtactcttcaggtatcttagaacatgtttggtttgatagatttttgtaacaattcattgaggatacatttggattggtagaaatggcatagcgaat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15624 tcaagtactcttcaggtatcttagaacatgtttggtttgatagatttttgtaacaattcattgaggatacatttggattggtagaaatggcatagcgaat 15525  T
Q  108 ggagtggaatgaaatgaaataacctaattagatttctagtactataggggcttggtttgagaa 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15524 ggagtggaatgaaatgaaataacctaattagatttctagtactataggggcttggtttgagaa 15462  T

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Target: scaffold0210; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 252 - 358
Target Start/End: Complemental strand, 15380 - 15274
Alignment:
Q  252 ctcaaaaataaaatgacatgcattaaattgatcctaatgttcattctggactacttgaccattgatcaggttctctccttagttcctgatttattgaagg 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15380 ctcaaaaataaaatgacatgcattaaattgatcctaatgttcattctggactacttgaccattgatcaggttctctccttagttcctgatttattgaagg 15281  T
Q  352 ttgaatt 358  Q
    |||||||    
T  15280 ttgaatt 15274  T

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Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 311 - 358
Target Start/End: Original strand, 6849701 - 6849748
Alignment:
Q  311 cattgatcaggttctctccttagttcctgatttattgaaggttgaatt 358  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||    
T  6849701 catttatcaggttctctccttagttcctgatttattgaaggttgaatt 6849748  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 311 - 355
Target Start/End: Complemental strand, 30597312 - 30597268
Alignment:
Q  311 cattgatcaggttctctccttagttcctgatttattgaaggttga 355  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||    
T  30597312 cattgattaggttctctcgttagttcctgatttattgaaggttga 30597268  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 355
Target Start/End: Original strand, 6890138 - 6890181
Alignment:
Q  312 attgatcaggttctctccttagttcctgatttattgaaggttga 355  Q
    |||||||||||||||||   ||||||||||||||||||||||||    
T  6890138 attgatcaggttctctcgaaagttcctgatttattgaaggttga 6890181  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 352
Target Start/End: Original strand, 32414626 - 32414666
Alignment:
Q  312 attgatcaggttctctccttagttcctgatttattgaaggt 352  Q
    |||||| ||||||| ||||| ||||||||||||||||||||    
T  32414626 attgattaggttctttccttggttcctgatttattgaaggt 32414666  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 7119804 - 7119838
Alignment:
Q  319 aggttctctccttagttcctgatttattgaaggtt 353  Q
    |||||||||||||||||||||||||||||||||||    
T  7119804 aggttctctccttagttcctgatttattgaaggtt 7119838  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 355
Target Start/End: Complemental strand, 7057941 - 7057897
Alignment:
Q  311 cattgatcaggttctctccttagttcctgatttattgaaggttga 355  Q
    ||||||| |||||||||||||||||| |||||||| |||||||||    
T  7057941 cattgattaggttctctccttagttcatgatttatcgaaggttga 7057897  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 355
Target Start/End: Complemental strand, 27700976 - 27700940
Alignment:
Q  319 aggttctctccttagttcctgatttattgaaggttga 355  Q
    ||||||||||| |||||||||||||||||||||||||    
T  27700976 aggttctctccgtagttcctgatttattgaaggttga 27700940  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 35336721 - 35336755
Alignment:
Q  319 aggttctctccttagttcctgatttattgaaggtt 353  Q
    ||||||||||||||||||||||||||||| |||||    
T  35336721 aggttctctccttagttcctgatttattggaggtt 35336755  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 355
Target Start/End: Original strand, 25102531 - 25102575
Alignment:
Q  311 cattgatcaggttctctccttagttcctgatttattgaaggttga 355  Q
    ||||||| ||||||||||| |||||||| ||||||||||||||||    
T  25102531 cattgattaggttctctccctagttcctaatttattgaaggttga 25102575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 355
Target Start/End: Original strand, 25161625 - 25161669
Alignment:
Q  311 cattgatcaggttctctccttagttcctgatttattgaaggttga 355  Q
    ||||||| ||||||||||| |||||||| ||||||||||||||||    
T  25161625 cattgattaggttctctccctagttcctaatttattgaaggttga 25161669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 355
Target Start/End: Original strand, 25216876 - 25216920
Alignment:
Q  311 cattgatcaggttctctccttagttcctgatttattgaaggttga 355  Q
    ||||||| ||||||||||| |||||||  ||||||||||||||||    
T  25216876 cattgattaggttctctccctagttccaaatttattgaaggttga 25216920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 355
Target Start/End: Original strand, 25281031 - 25281075
Alignment:
Q  311 cattgatcaggttctctccttagttcctgatttattgaaggttga 355  Q
    ||||||| ||||||||||| |||||||  ||||||||||||||||    
T  25281031 cattgattaggttctctccctagttccaaatttattgaaggttga 25281075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 355
Target Start/End: Complemental strand, 36627337 - 36627304
Alignment:
Q  322 ttctctccttagttcctgatttattgaaggttga 355  Q
    |||||||||||||||||||||||||| |||||||    
T  36627337 ttctctccttagttcctgatttattggaggttga 36627304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 355
Target Start/End: Original strand, 52187796 - 52187832
Alignment:
Q  319 aggttctctccttagttcctgatttattgaaggttga 355  Q
    ||||||| || ||||||||||||||||||||||||||    
T  52187796 aggttctttctttagttcctgatttattgaaggttga 52187832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 355
Target Start/End: Complemental strand, 28927530 - 28927486
Alignment:
Q  311 cattgatcaggttctctccttagttcctgatttattgaaggttga 355  Q
    ||||||| |||||||| ||||| ||||||||||||| ||||||||    
T  28927530 cattgattaggttctcaccttaattcctgatttattcaaggttga 28927486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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