View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9329-LTR4-TNT-insertion-11 (Length: 306)
Name: F9329-LTR4-TNT-insertion-11
Description: F9329-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9329-LTR4-TNT-insertion-11 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 8 - 296
Target Start/End: Complemental strand, 29073512 - 29073224
Alignment:
| Q |
8 |
ccttgtactttaatgtatgcaaagttatatgatccctttgtcagtactcatttcaatccttggtgggatccatatttgtggacatgtcccctccagccag |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29073512 |
ccttgtactttaatgtatgcaaagttatatgatccctttgtcagtactcatttcaatccttggtgggatccatatttgtggacatgtcccctccagccag |
29073413 |
T |
|
| Q |
108 |
acatgatatgattttaggctttggacaatcccctaatatctacactttttgttttggctttctccctccagcttctgcattatagagaatagacaaaata |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29073412 |
acatgatatgattttaggctttggacaatcccctaatatctacactttttgttttggctttctccctccagcttctgcattatagagaatagacaaaata |
29073313 |
T |
|
| Q |
208 |
ttattgtattagttgttaaaattttttgaagaaaatttcttatgtttaattaaacaaactaaaatggacagaccaaaatttattcatta |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29073312 |
ttattgtattagttgttaaaattttttgaagaaaatttcttatgtttaattaaacaaactaaaatggacagaccaaaatttattcatta |
29073224 |
T |
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