View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9329-LTR4-TNT-insertion-12 (Length: 359)
Name: F9329-LTR4-TNT-insertion-12
Description: F9329-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9329-LTR4-TNT-insertion-12 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 111 - 349
Target Start/End: Original strand, 8675392 - 8675630
Alignment:
| Q |
111 |
cgtgcgttggttaaggttaaatattctgaggagatctatatttagttagccacattttacatgaagaaactcaaaataaaagaaaatatattatagtatg |
210 |
Q |
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| T |
8675392 |
cgtgcgttggttaaggttaaatattctgaggagatctatatttagttagccacattttacatgaagaaactcaaaataaaagaaaatatattatagtatg |
8675491 |
T |
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| Q |
211 |
atttctcttttaagtgtttgtttggtagagggattgatggttttcacaaatagatatgtggcacatacgaatctaaaaagatcattgttatttttgtgaa |
310 |
Q |
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| T |
8675492 |
atttctcttttaagtgtttgtttggtagagggattgatggttttcacaaatagatatgtggcacatacgaatctaaaaagatcattgttatttttgtgaa |
8675591 |
T |
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| Q |
311 |
tttagaactcaaaactcactacaagaaatccatggaatt |
349 |
Q |
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| T |
8675592 |
tttagaactcaaaactcactacaagaaatccatggaatt |
8675630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 8675289 - 8675332
Alignment:
| Q |
8 |
ttatctagtttaatattgatgtatatgaatgtatgattaacttc |
51 |
Q |
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| T |
8675289 |
ttatctagtttaatattgatgtatatgaatgtatgattaacttc |
8675332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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