View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9329-LTR4-TNT-insertion-16 (Length: 500)

Name: F9329-LTR4-TNT-insertion-16
Description: F9329-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9329-LTR4-TNT-insertion-16
F9329-LTR4-TNT-insertion-16
[»] chr4 (5 HSPs)
chr4 (144-467)||(31913339-31913662)
chr4 (39-107)||(31913234-31913302)
chr4 (144-254)||(53403302-53403412)
chr4 (183-242)||(53920446-53920505)
chr4 (149-245)||(52884165-52884261)
[»] chr8 (3 HSPs)
chr8 (366-467)||(29012831-29012931)
chr8 (144-242)||(38760919-38761017)
chr8 (144-214)||(43327006-43327076)
[»] chr7 (3 HSPs)
chr7 (144-253)||(24747280-24747389)
chr7 (284-467)||(24747439-24747617)
chr7 (149-245)||(40718775-40718871)
[»] chr6 (1 HSPs)
chr6 (144-242)||(566536-566634)
[»] chr5 (2 HSPs)
chr5 (144-242)||(12463329-12463427)
chr5 (146-242)||(26777451-26777547)
[»] chr1 (1 HSPs)
chr1 (172-242)||(34145112-34145182)
[»] chr2 (1 HSPs)
chr2 (144-242)||(4917543-4917643)
[»] scaffold0361 (1 HSPs)
scaffold0361 (149-245)||(13446-13542)


Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 144 - 467
Target Start/End: Original strand, 31913339 - 31913662
Alignment:
Q  144 tatcaaacttctcctgtttggtatgcagagaaataaagaagagagaaaatattatggtgggacccagcactttttcctttcttcgctgatgtgcgaagaa 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31913339 tatcaaacttctcctgtttggtatgcagagaaataaagaagagagaaaatattatggtgggacccagcactttttcctttcttcgctgatgtgcgaagaa 31913438  T
Q  244 atatggggaactctgcnnnnnnnngcactttccactacataccctttcctcaattttgtatattttgcaagtattctccttccttaatatgtttttgttc 343  Q
    ||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31913439 atatggggaactctgcttttttttgcactttccactacataccctttcctcaattttgtatattttgcaagtattctccttccttaatatgtttttgttc 31913538  T
Q  344 tacgcagtgcaattcnnnnnnncacacgtgaatatgatatgttttttagtaacacaaacagtttattttttaaagaacacacataaatagttgttgttcc 443  Q
    |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31913539 tacgcagtgcaattctttttttcacacgtgaatatgatatgttttttagtaacacaaacagtttattttttaaagaacacacataaatagttgttgttcc 31913638  T
Q  444 cttaaatatattctccgtttgtgg 467  Q
    ||||||||||||||||||||||||    
T  31913639 cttaaatatattctccgtttgtgg 31913662  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 31913234 - 31913302
Alignment:
Q  39 aacccctagttaggtgacgataaattcattcaaaatattaacactgtgtttggttgtgttgaaataggg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31913234 aacccctagttaggtgacgataaattcattcaaaatattaacactgtgtttggttgtgttgaaataggg 31913302  T

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Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 144 - 254
Target Start/End: Original strand, 53403302 - 53403412
Alignment:
Q  144 tatcaaacttctcctgtttggtatgcagagaaataaagaagagagaaaatattatggtgggacccagcactttttcctttcttcgctgatgtgcgaagaa 243  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||  ||| |||||||||||| ||||||||| |||||||||||||  | ||||||    
T  53403302 tatcaaacttctcttgtttggtatgcagagaaataaggaagagagaaagaattttggtgggacccaccactttttcatttcttcgctgatcagtgaagaa 53403401  T
Q  244 atatggggaac 254  Q
     ||||||||||    
T  53403402 ttatggggaac 53403412  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 53920446 - 53920505
Alignment:
Q  183 agagagaaaatattatggtgggacccagcactttttcctttcttcgctgatgtgcgaaga 242  Q
    ||||||||| ||||||||||||||||| | ||||||| |||||||||||||||| |||||    
T  53920446 agagagaaattattatggtgggacccatccctttttcttttcttcgctgatgtgggaaga 53920505  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 245
Target Start/End: Complemental strand, 52884261 - 52884165
Alignment:
Q  149 aacttctcctgtttggtatgcagagaaataaagaagagagaaaatattatggtgggacccagcactttttcctttcttcgctgatgtgcgaagaaat 245  Q
    |||||||| ||||||||| ||  ||||||| |||||||||| |  ||||||||||| |||| ||||||| | ||||||| ||   ||||||||||||    
T  52884261 aacttctcttgtttggtacgccaagaaatagagaagagagatagaattatggtgggccccaccacttttgcttttcttctctagggtgcgaagaaat 52884165  T

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Target: chr8 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 366 - 467
Target Start/End: Complemental strand, 29012931 - 29012831
Alignment:
Q  366 cacacgtgaatatgatatgttttttagtaacacaaacagtttattttttaaagaacacacataaatagttgttgttcccttaaatatattctccgtttgt 465  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  29012931 cacacgtgaatatgatttgttttttagtaacacaaacagttt-ttttttaaagaacacacataaatagttgttgttcccttgtatatattctccgtttgt 29012833  T
Q  466 gg 467  Q
    ||    
T  29012832 gg 29012831  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 144 - 242
Target Start/End: Complemental strand, 38761017 - 38760919
Alignment:
Q  144 tatcaaacttctcctgtttggtatgcagagaaataaagaagagagaaaatattatggtgggacccagcactttttcctttcttcgctgatgtgcgaaga 242  Q
    ||||||||||||||||||||||||||||||||||||  |||||| |||| ||||||||||||| || | ||||||| ||||||||| |||||| |||||    
T  38761017 tatcaaacttctcctgtttggtatgcagagaaataagaaagagaaaaaagattatggtgggacacatccctttttcatttcttcgcagatgtgagaaga 38760919  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 43327076 - 43327006
Alignment:
Q  144 tatcaaacttctcctgtttggtatgcagagaaataaagaagagagaaaatattatggtgggacccagcact 214  Q
    |||||||||||||||||||| |  || ||||||||| |||||||||||  ||||||||||| |||| ||||    
T  43327076 tatcaaacttctcctgtttgattagctgagaaataaggaagagagaaagaattatggtgggccccaccact 43327006  T

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Target: chr7 (Bit Score: 78; Significance: 4e-36; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 144 - 253
Target Start/End: Original strand, 24747280 - 24747389
Alignment:
Q  144 tatcaaacttctcctgtttggtatgcagagaaataaagaagagagaaaatattatggtgggacccagcactttttcctttcttcgctgatgtgcgaagaa 243  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||| |||||||  |||||| |||| ||||||||||||    
T  24747280 tatcaaacttctcctgtttgatatgcagagaaataaggaagagagaaaagattatggtgggacccaccacttttcactttctacgctaatgtgcgaagaa 24747379  T
Q  244 atatggggaa 253  Q
    ||||||||||    
T  24747380 atatggggaa 24747389  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 284 - 467
Target Start/End: Original strand, 24747439 - 24747617
Alignment:
Q  284 accctttcctcaattttgtatattttgca-agtattctccttccttaatatgtttttgttctacgcagtgcaattcnnnnnnn-cacacgtgaatatgat 381  Q
    ||||||||||||||||||||||||||||| ||||||||||||    |||||  ||||||||||| |||||||||||        ||||    ||||||||    
T  24747439 accctttcctcaattttgtatattttgcagagtattctcctt----aatattcttttgttctacacagtgcaattcttttttttcaca----aatatgat 24747530  T
Q  382 atgttttttagtaacaca----aacagtttattttttaaagaacacacataaatagttgttgttcccttaaatatattctccgtttgtgg 467  Q
     | |||||||| ||||||    |||||||| ||||||||||||||||||||||   |||||||||||||| |||||||||||||||||||    
T  24747531 ttattttttagcaacacacataaacagttttttttttaaagaacacacataaa---ttgttgttcccttatatatattctccgtttgtgg 24747617  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 149 - 245
Target Start/End: Complemental strand, 40718871 - 40718775
Alignment:
Q  149 aacttctcctgtttggtatgcagagaaataaagaagagagaaaatattatggtgggacccagcactttttcctttcttcgctgatgtgcgaagaaat 245  Q
    |||||||| ||||||||||||  ||||||| |||||||||| |  |||||||||||| | | ||||||| | ||||||| |||| ||||||||||||    
T  40718871 aacttctcttgtttggtatgccaagaaatatagaagagagatagaattatggtgggatctaccacttttgcttttcttctctgaggtgcgaagaaat 40718775  T

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Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 144 - 242
Target Start/End: Original strand, 566536 - 566634
Alignment:
Q  144 tatcaaacttctcctgtttggtatgcagagaaataaagaagagagaaaatattatggtgggacccagcactttttcctttcttcgctgatgtgcgaaga 242  Q
    ||||||||||||||||||||||||||  |||||||| |||||||||||   ||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  566536 tatcaaacttctcctgtttggtatgctaagaaataaggaagagagaaagatttatggtgggacccaccactttttcttttcttcgctgatgtgcgaaga 566634  T

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Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 144 - 242
Target Start/End: Original strand, 12463329 - 12463427
Alignment:
Q  144 tatcaaacttctcctgtttggtatgcagagaaataaagaagagagaaaatattatggtgggacccagcactttttcctttcttcgctgatgtgcgaaga 242  Q
    |||| |||||||||||||||||||||  ||||||||  |||||||||| ||||| ||||||||||| | ||||||| |||||||||||||||| |||||    
T  12463329 tatctaacttctcctgtttggtatgctaagaaataagaaagagagaaattattagggtgggacccatccctttttcttttcttcgctgatgtgggaaga 12463427  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 146 - 242
Target Start/End: Complemental strand, 26777547 - 26777451
Alignment:
Q  146 tcaaacttctcctgtttggtatgcagagaaataaagaagagagaaaatattatggtgggacccagcactttttcctttcttcgctgatgtgcgaaga 242  Q
    |||||||||||||||||| |||||  ||||| || ||||||||||| ||| ||||| ||||||| ||| ||| ||||||||| ||||||||||||||    
T  26777547 tcaaacttctcctgtttgatatgccaagaaacaaggaagagagaaagtataatggttggacccaccacctttacctttcttcactgatgtgcgaaga 26777451  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 34145112 - 34145182
Alignment:
Q  172 agaaataaagaagagagaaaatattatggtgggacccagcactttttcctttcttcgctgatgtgcgaaga 242  Q
    |||||||| |||||||||||  |||||||| ||||||| ||||||||| ||||||||||||||||||||||    
T  34145112 agaaataaggaagagagaaaggattatggttggacccaccactttttcatttcttcgctgatgtgcgaaga 34145182  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 144 - 242
Target Start/End: Complemental strand, 4917643 - 4917543
Alignment:
Q  144 tatcaaacttctcctgtttggtatgcagagaaataaagaagagagaaaatat--tatggtgggacccagcactttttcctttcttcgctgatgtgcgaag 241  Q
    |||||||||| | |||||||||||| ||||||||||  ||||||||||| ||  ||||| |||||||| | ||||||| ||||||||| |||||| ||||    
T  4917643 tatcaaactttttctgtttggtatggagagaaataagaaagagagaaaagattatatggagggacccatccctttttcatttcttcgcagatgtgagaag 4917544  T
Q  242 a 242  Q
    |    
T  4917543 a 4917543  T

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Target: scaffold0361 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 149 - 245
Target Start/End: Original strand, 13446 - 13542
Alignment:
Q  149 aacttctcctgtttggtatgcagagaaataaagaagagagaaaatattatggtgggacccagcactttttcctttcttcgctgatgtgcgaagaaat 245  Q
    |||||||| |||||||||  |  ||||||| |||||||||| |  ||||||||||| |||| ||||||| | ||||||| |||| ||||||||||||    
T  13446 aacttctcttgtttggtacaccaagaaatagagaagagagatagaattatggtgggccccaccacttttgcttttcttctctgaggtgcgaagaaat 13542  T

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