View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9329-LTR4-TNT-insertion-2 (Length: 534)
Name: F9329-LTR4-TNT-insertion-2
Description: F9329-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9329-LTR4-TNT-insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 8 - 525
Target Start/End: Complemental strand, 3247202 - 3246685
Alignment:
| Q |
8 |
aggtcttgatgaggattctgtttctttggccttagaatcttgtattagaggctcatctccacttttggtctcaaaatttgaatacttaaaacctcctcga |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
3247202 |
aggtcttgatgaggattctgtttctttggccttagaatcttgtattagaggctcatcttcacttttggtctcaaaatttgaatacttaaaacctccttga |
3247103 |
T |
|
| Q |
108 |
tgtttaagccttgaagcactagaggcatcatgtttattgtcatcagcattatctgaaaacacaacagaagaacaattaatgcaaataagcagcatgtact |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3247102 |
tgtttaagccttgaagcactagaggcatcatgtttattgtcatcagcattatctgaaaacacaacagaagaacaattaatgcaaataagcaacatgtact |
3247003 |
T |
|
| Q |
208 |
tagaaaccatcatcatataacaaatcatgttttatttttcaccccaaactaaaaaacaaatgtgaaagttgcaattttcttacaccatttatcaaataaa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3247002 |
tagaaaccatcatcatataacaaatcatgttttatttttcaccccaaactaaaaaacaaatgtgaaagttgcaattttcttacaccatttatcaaataaa |
3246903 |
T |
|
| Q |
308 |
gctagatcacgttgagagtcccttacaagcgggggtaaccctgtcccatgagctagcttttagatcgagttgaatgataatgtaatatcaaaatctatct |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3246902 |
gctagatcacgttgagagtcccttacaagcgggggtaaccctgtcccatgagctagcttttagatcgagttgaatgataatgtaatatcaaaatctatct |
3246803 |
T |
|
| Q |
408 |
aagatgtgataaatatctttttctatataaataaggtatcacgaccctcgaaatattccaaccttgttgcattttcaaaacacaaactcgagacatctaa |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3246802 |
aagatgtgataaatatctttttctatataaataaggtatcacgaccctcgaaatattccaaccttgttgcattttcaaaacacaaactcgagacatctaa |
3246703 |
T |
|
| Q |
508 |
ttaaactagaaacaattg |
525 |
Q |
| |
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|||||||||||||||||| |
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|
| T |
3246702 |
ttaaactagaaacaattg |
3246685 |
T |
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