View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9329-LTR4-TNT-insertion-5 (Length: 488)
Name: F9329-LTR4-TNT-insertion-5
Description: F9329-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9329-LTR4-TNT-insertion-5 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 9 - 480
Target Start/End: Complemental strand, 2490208 - 2489737
Alignment:
| Q |
9 |
acctatatcattgattgaaaaactaatgggttttgaaaacaggtccacatgaatttgaactaatagcaaagattgtgttgaaaagtatggtacaaagtgt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2490208 |
acctatatcattgattgaaaaactaatgggttttgaaaacaggtccacatgaatttgaactaatagcaaagattgtgttgaaaagtatggtacaaagtgt |
2490109 |
T |
|
| Q |
109 |
attgctagcactctccaggtactaagaaagagcacaaaaacttcattgtacatgtcgaactagtagaggtaccttctttcaaatcgtctaataattgctt |
208 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2490108 |
attgctagcactcttcaggtactaagaaagagcacaaaaaattcattgtacatgtcgaactagtagaggtaccttctttcaaatcgtctaataattgctt |
2490009 |
T |
|
| Q |
209 |
catccaagtcaaggggcctattggttgcagcgaggacaagaatacgatcctctgatttcgaggtaagtccatcccaattggacatgaattcattctttat |
308 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2490008 |
catccaagtcaaagggcctattggttgcagcgaggacaagaatacgatcctctgatttcgaggtaagtccatcccaattggacatgaattcattctttat |
2489909 |
T |
|
| Q |
309 |
tttccgcatggcttcatgttccccaactcttgttcgctgcccaagcatactgtcaacctcatcgacaaatataatagttggggagaccttggctgccagt |
408 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2489908 |
tttccgcatggcttcatgttccccaactcttgttcgctgcccaagcatactgtcaacctcatcgacaaatataatagttggggagaccttggctgccagt |
2489809 |
T |
|
| Q |
409 |
gtgaataaagctcggacattcttctcgtcttcaccaaaccatttagaagtgatggtagacatggatacatta |
480 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2489808 |
gtgaataaagctcggacattcttctcgtcttcaccaaaccatttagaagtgatggtagacatggatacatta |
2489737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 162; Significance: 3e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 179 - 480
Target Start/End: Original strand, 41590948 - 41591249
Alignment:
| Q |
179 |
accttctttcaaatcgtctaataattgcttcatccaagtcaaggggcctattggttgcagcgaggacaagaatacgatcctctgatttcgaggtaagtcc |
278 |
Q |
| |
|
|||| ||||||||||| || ||||| |||||||||||||||| |||||||||||||| || || ||||| || || || || ||| | || || || |
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| T |
41590948 |
acctcctttcaaatcgccttataatagcttcatccaagtcaaatggcctattggttgctgcaagaacaaggatgcgctctccttgttttgtcgtgagccc |
41591047 |
T |
|
| Q |
279 |
atcccaattggacatgaattcattctttattttccgcatggcttcatgttccccaactcttgttcgctgcccaagcatactgtcaacctcatcgacaaat |
378 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| || |||||||||||||||||| |
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| T |
41591048 |
gtcccaatgggacataaattcattctttattttccgcatggcttcatgctccccaactcttgttcgttgcccaagcatgctatcaacctcatcgacaaat |
41591147 |
T |
|
| Q |
379 |
ataatagttggggagaccttggctgccagtgtgaataaagctcggacattcttctcgtcttcaccaaaccatttagaagtgatggtagacatggatacat |
478 |
Q |
| |
|
||||||||||||||||| |||| ||| |||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41591148 |
ataatagttggggagactttggatgcaagtgtgaataaagcgcgaacattcttctcatcttcaccaaaccatttagaagtgatggtagacatggacacat |
41591247 |
T |
|
| Q |
479 |
ta |
480 |
Q |
| |
|
|| |
|
|
| T |
41591248 |
ta |
41591249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 274 - 470
Target Start/End: Original strand, 11094442 - 11094638
Alignment:
| Q |
274 |
agtccatcccaattggacatgaattcattctttattttccgcatggcttcatgttccccaactcttgttcgctgcccaagcatactgtcaacctcatcga |
373 |
Q |
| |
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||||||||||||| | |||||||||||| || || |||| |||||| |||||||| || ||||| || ||||| || ||||| |||||||| ||||||| |
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| T |
11094442 |
agtccatcccaatgtgtcatgaattcatttttaatcttcctcatggcctcatgttctccgactctagtacgctgaccgagcatgctgtcaacttcatcga |
11094541 |
T |
|
| Q |
374 |
caaatataatagttggggagaccttggctgccagtgtgaataaagctcggacattcttctcgtcttcaccaaaccatttagaagtgatggtagacat |
470 |
Q |
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| ||||||||||| || | ||||| ||||| || ||||| ||||||||||||||||| || ||||| || |||||||| |||||||| || ||||| |
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| T |
11094542 |
cgaatataatagtcggagcaaccttagctgctagcgtgaacaaagctcggacattcttttcatcttctccgaaccattttgaagtgatcgtggacat |
11094638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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