View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9329-LTR4-TNT-insertion-6 (Length: 617)

Name: F9329-LTR4-TNT-insertion-6
Description: F9329-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9329-LTR4-TNT-insertion-6
F9329-LTR4-TNT-insertion-6
[»] chr3 (2 HSPs)
chr3 (9-607)||(45068216-45068814)
chr3 (37-463)||(3737920-3738353)
[»] chr7 (2 HSPs)
chr7 (127-217)||(32386495-32386585)
chr7 (162-224)||(32400666-32400728)
[»] chr8 (1 HSPs)
chr8 (162-232)||(31848385-31848455)


Alignment Details
Target: chr3 (Bit Score: 595; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 9 - 607
Target Start/End: Complemental strand, 45068814 - 45068216
Alignment:
Q  9 gtttcaatggataccagtagtgtatgtctactactacggtttttacttttgtttgttgtgtgtatcacttcctctgaatcaaattatataagatacaata 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45068814 gtttcaatggataccagtagtgtatgtctactactacggtttttacttttgtttgttgtgtgtatcacttcctctgaatcaaattatataagatacaata 45068715  T
Q  109 ctaactcaaccattgttcctgggaagctcaatgttcacttagtccctcatagtcatgatgatgttggatggttgaaaaccattgatcagtactatgttgg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45068714 ctaactcaaccattgttcctgggaagctcaatgttcacttagtccctcatagtcatgatgatgttggatggttgaaaaccattgatcagtactatgttgg 45068615  T
Q  209 ttccaacaacaccattcaggttattcattcactcttctaaggacactctctttaactcaattcaattgcatgattttgattttgttttattgttgttcaa 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45068614 ttccaacaacaccattcaggttattcattcactcttctaaggacactctctttaactcaattcaattgcatgattttgattttgttttattgttgttcaa 45068515  T
Q  309 aatgcagggagcatgcgttcaaaatgtgcttgattcccttataccagcgttgttggcggacaagaatcgcaaattcatctatgttgaacaggcaagaatc 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45068514 aatgcagggagcatgcgttcaaaatgtgcttgattcccttataccagcgttgttggcggacaagaatcgcaaattcatctatgttgaacaggcaagaatc 45068415  T
Q  409 aagactatcatctatgtagcattgacacttcacatcaaagctgtgtttggtgtccctacgacactaacacatcaagttatattcaaatatttcgtggtaa 508  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  45068414 aagactatcatctatgtagcattgacacttcacatcaaagctgtgtttggtgtccctacgacactaacacatcaagttatattcaaatatttcgtgttaa 45068315  T
Q  509 catgtcagtgttgtgtgtctgaatgtccgtgtctatttcagtgctttattgctatgcatgcaatctcaatatgcatatgcagttcataacgatatatta 607  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45068314 catgtcagtgttgtgtgtctgaatgtccgtgtctatttcagtgctttattgctatgcatgcaatctcaatatgcatatgcagttcataacgatatatta 45068216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 37 - 463
Target Start/End: Complemental strand, 3738353 - 3737920
Alignment:
Q  37 tactactacggtttttacttttgtttgttgtgtgtatcacttcctctgaatcaaattatataagatacaatactaactcaa--------ccattgttcct 128  Q
    |||| |||||||||||||| || || ||||||||||| | ||| |||||||||||||| ||||||||||||||||||||||        |||||||||||    
T  3738353 tactgctacggtttttactcttcttggttgtgtgtattatttcttctgaatcaaattacataagatacaatactaactcaagtactcaaccattgttcct 3738254  T
Q  129 gggaagctcaatgttcacttagtccctcatagtcatgat-gatgttggatggttgaaaaccattgatcagtactatgttggttccaacaacaccattcag 227  Q
    ||||||||||||||| |||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3738253 gggaagctcaatgttgacttggtccctcatggtcatgattgatgttggatggttgaaaaccattgatcagtactatgttggttccaaccacaccattcag 3738154  T
Q  228 gttattcattcactcttctaaggacactctctttaactcaattcaattgcatgattttgattttgttttattgttgttcaaaatgcagggagcatgcgtt 327  Q
    || ||||| |   ||||| |    ||| | |||||| | |||| |||| ||||||||| || |||||| |   |||||   ||||||| |||||||||||    
T  3738153 gtcattcactttttcttcca----cacacactttaatttaattgaattccatgatttttatgttgtttaaccattgttgtgaatgcagagagcatgcgtt 3738058  T
Q  328 caaaatgtgcttgattcccttataccagcgttgttggcggacaagaatcgcaaattcatctatgttgaacaggcaagaatcaagactatcatctatg--t 425  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||  |    
T  3738057 caaagtgtgcttgattcccttataccagcgttgttggcggacaagaatcgcaaattcatctatgctgaacatgcaagagtcaagactatcatctatgtat 3737958  T
Q  426 agcattgacacttcacatcaaagctgtgtttggtgtcc 463  Q
    |||| ||| ||||||||||||||| || |||| |||||    
T  3737957 agcactgagacttcacatcaaagccgtatttgatgtcc 3737920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 127 - 217
Target Start/End: Complemental strand, 32386585 - 32386495
Alignment:
Q  127 ctgggaagctcaatgttcacttagtccctcatagtcatgatgatgttggatggttgaaaaccattgatcagtactatgttggttccaacaa 217  Q
    |||||||||||||||||||  | ||  |||||| ||||||||||||||| |||||||| ||  ||||||||||||||||||||||||||||    
T  32386585 ctgggaagctcaatgttcatctggttgctcatactcatgatgatgttgggtggttgaagactgttgatcagtactatgttggttccaacaa 32386495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 162 - 224
Target Start/End: Complemental strand, 32400728 - 32400666
Alignment:
Q  162 catgatgatgttggatggttgaaaaccattgatcagtactatgttggttccaacaacaccatt 224  Q
    |||||||||||||| ||| | || ||| ||||||||||||| ||||| ||||||||| |||||    
T  32400728 catgatgatgttggttggcttaagaccgttgatcagtactacgttggatccaacaactccatt 32400666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 162 - 232
Target Start/End: Original strand, 31848385 - 31848455
Alignment:
Q  162 catgatgatgttggatggttgaaaaccattgatcagtactatgttggttccaacaacaccattcaggttat 232  Q
    |||||||||||||| ||| | || ||  ||||||| ||||||||||| ||||||||  |||||||||||||    
T  31848385 catgatgatgttggttggcttaagactgttgatcaatactatgttggctccaacaattccattcaggttat 31848455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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