View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9329-LTR4-TNT-insertion-7 (Length: 146)
Name: F9329-LTR4-TNT-insertion-7
Description: F9329-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9329-LTR4-TNT-insertion-7 |
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Alignment Details
Target: chr7 (Bit Score: 129; Significance: 4e-67; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 4e-67
Query Start/End: Original strand, 8 - 136
Target Start/End: Complemental strand, 42046391 - 42046263
Alignment:
| Q |
8 |
gctcctacaatatttcaaagctatgcaattgattgtgcatttgacaccgataacaaccaggcattcatctttcatgaaaatttttgtgctctaatagact |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42046391 |
gctcctacaatatttcaaagctatgcaattgattgtgcatttgacaccgataacaaccaggcattcatctttcatgaaaatttttgtgctctaatagact |
42046292 |
T |
|
| Q |
108 |
atgctccatactcttgcaacgacaaatta |
136 |
Q |
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| T |
42046291 |
atgctccatactcttgcaacgacaaatta |
42046263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 3352203 - 3352328
Alignment:
| Q |
8 |
gctcctacaatatttcaaagctatgcaattgattgtgcatttgacaccgataacaaccaggcattcatctttcatgaaaatttttgtgctctaatagact |
107 |
Q |
| |
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|||| ||| |||||| |||||||| ||| |||||| | ||| |||||||||||||| | |||||||||||| ||||||| ||||||||||| ||||||| |
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| T |
3352203 |
gctcataccatatttggaagctatggaatagattgttcctttaacaccgataacaacgaagcattcatcttttatgaaaacttttgtgctctcatagact |
3352302 |
T |
|
| Q |
108 |
atgctccatactcttgcaacgacaaa |
133 |
Q |
| |
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|||| |||||||| |||||| |||| |
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| T |
3352303 |
atgcaccatactcgggcaacgtcaaa |
3352328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 1e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 14452484 - 14452596
Alignment:
| Q |
8 |
gctcctacaatatttcaaagctatgcaattgattgtgcatttgacaccgataacaaccaggcattcatctttcatgaaaatttttgtgctctaatagact |
107 |
Q |
| |
|
|||| |||||||||| |||||||| |||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
14452484 |
gctcatacaatatttggaagctatggaattgattgtgcctttgacaccgataacaacgaggcattcatcttttatgaaaatttttgtgctctcatagact |
14452583 |
T |
|
| Q |
108 |
atgctccatactc |
120 |
Q |
| |
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|||| ||| |||| |
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| T |
14452584 |
atgcaccacactc |
14452596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 5e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 25 - 114
Target Start/End: Complemental strand, 42471561 - 42471472
Alignment:
| Q |
25 |
aagctatgcaattgattgtgcatttgacaccgataacaaccaggcattcatctttcatgaaaatttttgtgctctaatagactatgctcc |
114 |
Q |
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|||||||| |||||||||||| |||||||| ||||||| | |||||||||| ||| ||||||| |||||||||| |||||||||||||| |
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| T |
42471561 |
aagctatggaattgattgtgcctttgacacggataacacctaggcattcatattttatgaaaacctttgtgctctcatagactatgctcc |
42471472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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