View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9330-LTR4-TNT-insertion-1 (Length: 262)
Name: F9330-LTR4-TNT-insertion-1
Description: F9330-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9330-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 8 - 253
Target Start/End: Original strand, 3706997 - 3707242
Alignment:
| Q |
8 |
ggagttgggtgttctcataagtgattaactatgagagattgaaatttttgtttttgacacatacatactataaaatgttggaatgtatataatatatggt |
107 |
Q |
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| T |
3706997 |
ggagttgggtgttctcataagtgattaactatgagagattgaaatttttgtttttgacacatacatactataaaatgttggaatgtatataatatatggt |
3707096 |
T |
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| Q |
108 |
catttcttagaaaacatcctgatgtcatcttgataccactagatatatagatcaagaagttgagcaatgctgggggctggaaaagcaattcacaacactg |
207 |
Q |
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| T |
3707097 |
catttcttagaaaacatcctgatgtcatcttgataccactagatatatagatcaagaagttgagcaatgctgggggctggaaaagcaattcacaacactg |
3707196 |
T |
|
| Q |
208 |
ataggagcaaaaactctagcagaaaagacccaaatacattcaattg |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3707197 |
ataggagcaaaaactctagcagaaaagacccaaatacattcaattg |
3707242 |
T |
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