View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9330-LTR4-TNT-insertion-2 (Length: 813)
Name: F9330-LTR4-TNT-insertion-2
Description: F9330-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9330-LTR4-TNT-insertion-2 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 699; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 699; E-Value: 0
Query Start/End: Original strand, 9 - 813
Target Start/End: Complemental strand, 11036346 - 11035542
Alignment:
| Q |
9 |
cttacaaaggatattatgattgctgaaaatagtatatacnnnnnnnnnnnnnnnntcgaattgcaatgaacatgttttgatattcctaagttagttgtgt |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11036346 |
cttacaaaggatattatgattgctgaaaatagtatatacaaaataaaataaaaaatcgaattgcaatgaacatgttttgatattcctaagttagttgtgt |
11036247 |
T |
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| Q |
109 |
gcactttgctggtgtgactcctcaaaatcctcataatcaaaatctccccatttatgtgagcgaatttcatgtggtatttacctctcggcaagataagaga |
208 |
Q |
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| T |
11036246 |
gcactttgctggtgtgactcctcaaaatcctcataatcaaaatctccccatttatgtgagcgaatttcatgtggtatttacctctcggcaagataagaga |
11036147 |
T |
|
| Q |
209 |
aaaaggttctcaccatctcacaagtccactttgcatgatagcaagtggaaccatattagtatgaggcatatctatgttgnnnnnnnnnnnnnnnnnncca |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
11036146 |
aaaaggttctcaccatctcacaagtccactttgcatgatagcaagtggaaccatattagtatgaggcatatctatgttgtgctgctgctgctgctgccca |
11036047 |
T |
|
| Q |
309 |
ttcaccaccggtgaaggggcggtactggaacgacaaacggggcaattcgaatgtgaatgaagccacatgtcaatacacgaaacatgaaaagagtgtaagc |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11036046 |
ttcaccaccggtgaaggggcggtactggaacgacaaacggggcaattcgaatgtgaatgaagccacatgtcaatacatgaaacatgaaaagagtgtaagc |
11035947 |
T |
|
| Q |
409 |
actcaggcatagtcctcaactcttcaccctcctcaaaatctcccaaacacacggcacacgtgtcgccttcgccatctggaacagcatcatctttatttct |
508 |
Q |
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| T |
11035946 |
actcaggcatagtcctcaactcttcaccctcctcaaaatctcccaaacacacggcacacgtgtcgccttcgccatctggaacagcatcatctttatttct |
11035847 |
T |
|
| Q |
509 |
cttatggtacttgtgtgttggaaataggtttgctactgatgtggatgtgttttcttcgaggctcggtgtcgcgggttgccgcggtggttgtgttgggttg |
608 |
Q |
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| T |
11035846 |
cttatggtacttgtgtgttggaaataggtttgctactgatgtggatgtgttttcttcgaggctcggtgtcgcgggttgccgcggtggttgtgttgggttg |
11035747 |
T |
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| Q |
609 |
gtggtggtacgttgatggttacaaaaacagatggctacgacatgatacattgaaacaacaaataatgctgaacccatggcaataagtagaacaataacgt |
708 |
Q |
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| T |
11035746 |
gtggtggtacgttgatggttacaaaaacagatggctacgacatgatacattgaaacaacaaataatgctgaacccatggcaataagtagaacaataacgt |
11035647 |
T |
|
| Q |
709 |
tgtcagataaaggattatcaccatgatcaccgtccataaatcaatgatcatgtatgtgatgctagaaagaaatggttgcagtgatcttaattaagcttta |
808 |
Q |
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| T |
11035646 |
tgtcagataaaggattatcaccatgatcaccgtccataaatcaatgatcatgtatgtgatgctagaaagaaatggttgcagtgatcttaattaagcttta |
11035547 |
T |
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| Q |
809 |
taaga |
813 |
Q |
| |
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||||| |
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|
| T |
11035546 |
taaga |
11035542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 316 - 557
Target Start/End: Complemental strand, 11034355 - 11034114
Alignment:
| Q |
316 |
ccggtgaaggggcggtactggaacgacaaacggggcaattcgaatgtgaatgaagccacatgtcaatacacgaaacatgaaaagagtgtaagcactcagg |
415 |
Q |
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|||| |||||||||| ||||||||||||||||||||||||| |||| ||||| |||||||||||||||||| ||||||||||| || ||||||||||| |
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| T |
11034355 |
ccggcgaaggggcggcactggaacgacaaacggggcaattcaaatgcgaatggagccacatgtcaatacactttacatgaaaagaatgcaagcactcagg |
11034256 |
T |
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| Q |
416 |
catagtcctcaactcttcaccctcctcaaaatctcccaaacacacggcacacgtgtcgccttcgccatctggaacagcatcatctttatttctcttatgg |
515 |
Q |
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| T |
11034255 |
catagtcctcaattcctcaccttcctcaaaatctcccaaacacaccgcacatgtgccgccttcgtcatctgtaacaacgtcacctttgtttctcttgtgg |
11034156 |
T |
|
| Q |
516 |
tacttgtgtgttggaaataggtttgctactgatgtggatgtg |
557 |
Q |
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|||||||||||||||| ||||||| ||| ||||| ||||||| |
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| T |
11034155 |
tacttgtgtgttggaattaggtttactattgatgaggatgtg |
11034114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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