View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9331-LTR4-TNT-insertion-1 (Length: 507)
Name: F9331-LTR4-TNT-insertion-1
Description: F9331-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9331-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 471; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 6 - 497
Target Start/End: Original strand, 26742966 - 26743457
Alignment:
| Q |
6 |
cactttattcttggactaagtccgaatagtagnnnnnnnttggatgtggggaaaaatgggttggcgttaaaatggtgagttaaaagtgaggaattgatca |
105 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26742966 |
cactttattcttggactaagtccgaatagtagaaaaaaattggatgtggggaaaaatgggttggcgttaaaatggtgagttaaaagtgaggaattgatca |
26743065 |
T |
|
| Q |
106 |
cacaagaacaaatactggaaatttacggatcatggaagtggatcctcctataggaaccttgatgtattttagaagacatttcgtgtgttcaatgtgacgt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26743066 |
cacaagaacaaatactggaaatttacggatcatggaagtggatcctcctataggaaccttgatgtattttagaagacatttcgtgtgttcaatgtgacgt |
26743165 |
T |
|
| Q |
206 |
tttagaaatcgaacatcaaaccagtgagactttcaacttatagttggataaaattgtgatcgaaccactcaatgactcaaataactaaattttagacaat |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26743166 |
tttagaaatcgaacatcaaaccagtgagactttcaacttatagttggataaaattgtgatcgaaccactcaatgactcaaataactaaattttagacaat |
26743265 |
T |
|
| Q |
306 |
gacaatttaaggtttaaccgactgaaccatctgatttgattttaaataattgttccgaggtcattggacacacggaccttatttcttattcgattttcaa |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26743266 |
gacaatttaaggtttaaccgactgaaccatctgatttgattttaaataattgttccgaggtcattggacacacggaccttatttcttattcgattttcaa |
26743365 |
T |
|
| Q |
406 |
taatttttcgaggccattggagacacgagtcttgtttcttcgtgacatgtataaaacaggaagataaaagaggtgatatgatacgtatatta |
497 |
Q |
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| T |
26743366 |
taatttttcgaggccattggagacacgagtcttgtttcttcgtgacatgtataaaacaggaagataaaagaggtgatatgatacgtatatta |
26743457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 280 - 392
Target Start/End: Original strand, 26750256 - 26750368
Alignment:
| Q |
280 |
actcaaataactaaattttagacaatgacaatttaaggtttaaccgactgaaccatctgatttgattttaaataattgttccgaggtcattggacacacg |
379 |
Q |
| |
|
||||||||||| |||||||||||| || || |||||||||||||||| |||||| ||| ||| |||||| || |||||| | ||||||||||| ||| | |
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| T |
26750256 |
actcaaataaccaaattttagacactgccagtttaaggtttaaccgattgaaccgtcttattcgattttgaaatattgtttcaaggtcattggatacatg |
26750355 |
T |
|
| Q |
380 |
gaccttatttctt |
392 |
Q |
| |
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|| ||| |||||| |
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|
| T |
26750356 |
gagcttgtttctt |
26750368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 26750117 - 26750173
Alignment:
| Q |
143 |
gtggatcctcctataggaaccttgatgtattttagaagacatttcgtgtgttcaatg |
199 |
Q |
| |
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||||||||||||||| |||||| |||||||||||||||| ||| ||||| |||||| |
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|
| T |
26750117 |
gtggatcctcctatatgaacctcaatgtattttagaagactttttgtgtgatcaatg |
26750173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 91 - 119
Target Start/End: Original strand, 26697057 - 26697085
Alignment:
| Q |
91 |
gtgaggaattgatcacacaagaacaaata |
119 |
Q |
| |
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||||||||||||||||||||||||||||| |
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|
| T |
26697057 |
gtgaggaattgatcacacaagaacaaata |
26697085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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