View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9331-LTR4-TNT-insertion-10 (Length: 202)
Name: F9331-LTR4-TNT-insertion-10
Description: F9331-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9331-LTR4-TNT-insertion-10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 8 - 194
Target Start/End: Original strand, 38613065 - 38613251
Alignment:
| Q |
8 |
cttccgaccaaccgatcctagctctccagtacaaatcttcttgctcttctcaaagaacatactgcctcttttttccctccttcacttctttagacacacc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38613065 |
cttccgaccaaccgatcctagctctccagtacaaatcttcttgctcttctcaaagaacatactgcctcttttttccctccttcacttctttagacacacc |
38613164 |
T |
|
| Q |
108 |
tccctctccaccaaaatctttttactttgtttgtcacataaccnnnnnnnnaaataaattttctcactctccacccaatcttcatta |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38613165 |
tccctctccaccaaaatctttttactttgtttgtcacataaccttttttttaaataaattttctcactctccacccaatcttcatta |
38613251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 39117179 - 39117110
Alignment:
| Q |
76 |
ttttttccctccttcacttctttagacacacc-tccctctccaccaaaatctttttactttgtttgtcac |
144 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
39117179 |
ttttttccctcattcacttctttagacacaccatccctctccaccaaaatctttttgccttgtttgtcac |
39117110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 377 times since January 2019
Visitors: 969