View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9331-LTR4-TNT-insertion-3 (Length: 792)
Name: F9331-LTR4-TNT-insertion-3
Description: F9331-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9331-LTR4-TNT-insertion-3 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 631; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 631; E-Value: 0
Query Start/End: Original strand, 76 - 782
Target Start/End: Original strand, 7188791 - 7189498
Alignment:
| Q |
76 |
atactccatttctaaaaccaagtttttgatcccctgattataaagtcaacagaaatttatggtctccctcctcgttagatgacgtggcctacatgacatt |
175 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7188791 |
atactccatttctaaaaccaagtttttgatcccctgattataaagtcaacagaaatttatggtctccctcctcgttagatgacgtggcctacatgacatt |
7188890 |
T |
|
| Q |
176 |
acctagatgatccatcatttgacacatcaattttgcaatcgagctctctactccaagtttttgtaccgnnnnnnnaggcattcctcttcaaaaactatgt |
275 |
Q |
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| T |
7188891 |
acctagatgatccatcatttgacacatcaattttgcaatcgagctctctactccaagtttttgtaccgtttttttaggcattcctcttcaaaaactatgt |
7188990 |
T |
|
| Q |
276 |
gggcgcaacaccaatctcccgaacatcaaatgtgtacattttgagttaatcaatttggagaattcttccgagacttcattgcttctactcaactagctgg |
375 |
Q |
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| T |
7188991 |
gggcgcaacaccaatctcccgaacatcaaatgtgtacattttgagttaatcaatttggagaattcttccgagacttcattgcttctactcaactagctgg |
7189090 |
T |
|
| Q |
376 |
tctagcttcctaatatcgaatatttgagcgtcggttcaactttagaccatgcttgttttgagnnnnnnnnnattgtatttataaattttgtcaaaagtat |
475 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
7189091 |
tctagcttcctaatatcgaatatttgagcgtcggttcaactttagaccatgcttgttttgagtttttttttattgtatttataaattttgtcaaaagtat |
7189190 |
T |
|
| Q |
476 |
ggagacttttattgaaccgatggtatatttggacctaggcacatccatacctgatgaaatagtggactttctgctttggaaatcaccctcaa-cagaggt |
574 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7189191 |
ggagacttttattgaaccgatggtatatttggacctaggcacatccatacctgatgaaatagtggactttctgctttggaaatcaccctcaaccagaggt |
7189290 |
T |
|
| Q |
575 |
tgacatcatagattgatcaaggttagatgtgcattcaacnnnnnnnactgagattgcatgaaaatgtgtacacatgttcacaagtgcgcgtcttgataca |
674 |
Q |
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| T |
7189291 |
tgacatcatagattgatcaaggttagatgtgcattcaactttttttactgagattgcatgaaaatgtgtacacatgttcacaagtgcgcgtcttgataca |
7189390 |
T |
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| Q |
675 |
caagtaagacttgttttactgagataaacattagcatcgttattcacatttcagaccaatttgaattatcagttagctcatagcattgttaaagtggttg |
774 |
Q |
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| T |
7189391 |
caagtaagacttgttttactgagataaacattagcatcgttattcacatttcagaccaatttgaattatcagttagctcatagcattgttaaagtggttg |
7189490 |
T |
|
| Q |
775 |
taaaatta |
782 |
Q |
| |
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|||||||| |
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| T |
7189491 |
taaaatta |
7189498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 255 - 416
Target Start/End: Original strand, 7022713 - 7022874
Alignment:
| Q |
255 |
attcctcttcaaaaactatgtgggcgcaacaccaatctcccgaacatcaaatgtgtacattttgagttaatcaatttggagaattcttccgagacttcat |
354 |
Q |
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||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
7022713 |
attcctcttcaaaaactatgtggaagcaataccaatctcccgaacatcaaatgtgtacatattgatttaatcaatttggagaattcttccgagacttcat |
7022812 |
T |
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| Q |
355 |
tgcttctactcaactagctggtctagcttcctaatatcgaatatttgagcgtcggttcaact |
416 |
Q |
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| T |
7022813 |
tgcttctactcaactagctggtctagcttgctaatatccaatatttgagcatcagttcaact |
7022874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 518 - 613
Target Start/End: Original strand, 7023077 - 7023172
Alignment:
| Q |
518 |
atccatacctgatgaaatagtggactttctgctttggaaatcaccctcaacagaggttgacatcatagattgatcaaggttagatgtgcattcaac |
613 |
Q |
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| T |
7023077 |
atccatacctgatggaatagttgactttttgcttcgaaagtcaccctcagcaaaggtcgacatcatagactggtcgaggttagatgtgcattcaac |
7023172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 163
Target Start/End: Original strand, 426318 - 426398
Alignment:
| Q |
83 |
atttctaaaaccaagtttttgatcccctgattataaagtcaacagaaatttatggtctccctcctcgttagatgacgtggc |
163 |
Q |
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| T |
426318 |
atttctaaaactaagtttctgatcccctatttataaagtcaacggaaatttctgatcccccgcctctttagatgacatggc |
426398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 520 - 612
Target Start/End: Complemental strand, 36590405 - 36590313
Alignment:
| Q |
520 |
ccatacctgatgaaatagtggactttctgctttggaaatcaccctcaacagaggttgacatcatagattgatcaaggttagatgtgcattcaa |
612 |
Q |
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|||||||||||| ||||||||||||| || || || ||||| ||| |||| ||||||||||||||| | ||||||| | |||||||||||| |
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| T |
36590405 |
ccatacctgatggaatagtggactttttgattcaaaactcaccgtcagcagaagttgacatcatagatagctcaaggtgaaatgtgcattcaa |
36590313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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