View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9331-LTR4-TNT-insertion-4 (Length: 249)
Name: F9331-LTR4-TNT-insertion-4
Description: F9331-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9331-LTR4-TNT-insertion-4 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 241
Target Start/End: Original strand, 42463979 - 42464209
Alignment:
| Q |
11 |
atacttatacacatacactaaacaagctctagatatcctacaacatgcttgataggagaagaaacaactgcagctggcagcataaatatacattcatcaa |
110 |
Q |
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| T |
42463979 |
atacttatacacatacactaaacaagctctagatatcctacaacatgcttgataggagaagaaacaactacagctggcagcataaatatacattcatcaa |
42464078 |
T |
|
| Q |
111 |
aatcaataataattaaggcaaggcttaagagtatggaagtactacacagtacacccttacatttgcttgtatcaattccaaactgagacaaatctatctg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42464079 |
aatcaataataattaaggcaaggcttaagagtatggaagtactacacagtacacccttacatttgcttgtatcaattccaaactgagacaaatctatctg |
42464178 |
T |
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| Q |
211 |
tccttttcaaagtacctgtagcaataaatta |
241 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
42464179 |
tccttttcaaagtacctgtagcaataaatta |
42464209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 131
Target Start/End: Original strand, 42476695 - 42476796
Alignment:
| Q |
31 |
aacaagctctagatatcctacaacatgcttgataggagaagaaacaactgcagctggcagca-taaatatacattcatcaaaatcaataataattaaggc |
129 |
Q |
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||||||||||| ||||||||||||| ||| || ||||| ||||||||| |||| |||||| ||||||||||| |||||||||||||||||||||| || |
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| T |
42476695 |
aacaagctctatatatcctacaacacgctaaattggagaggaaacaactaaagcttgcagcactaaatatacatccatcaaaatcaataataattaaagc |
42476794 |
T |
|
| Q |
130 |
aa |
131 |
Q |
| |
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|| |
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|
| T |
42476795 |
aa |
42476796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 42490428 - 42490501
Alignment:
| Q |
166 |
cttacatttgcttgtatcaattccaaactgagacaaatctatctgtccttttcaaagtacctgtagcaataaat |
239 |
Q |
| |
|
||||||||| |||| ||||||||||||||| |||||||||||||||||| ||| ||||||||| |||||||||| |
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| T |
42490428 |
cttacatttacttggatcaattccaaactgggacaaatctatctgtcctgttcgaagtacctgcagcaataaat |
42490501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 238
Target Start/End: Original strand, 42469467 - 42469543
Alignment:
| Q |
160 |
tacacccttacatttgcttgtatcaattccaaactgagacaaatctatctgtccttttcaaagtacctgtagcaataaa |
238 |
Q |
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||||| ||||||||| |||| |||||| ||||||||||| ||||| |||||||||||||| |||||||||||||||| |
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| T |
42469467 |
tacacacttacatttacttggatcaatatcaaactgagacgaatct--ctgtccttttcaaactacctgtagcaataaa |
42469543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 238
Target Start/End: Original strand, 42476834 - 42476891
Alignment:
| Q |
181 |
atcaattccaaactgagacaaatctatctgtccttttcaaagtacctgtagcaataaa |
238 |
Q |
| |
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|||||| |||||| ||||||||||| |||||||| ||||||||||||||||||||| |
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|
| T |
42476834 |
atcaataccaaaccaagacaaatctacatgtcctttacaaagtacctgtagcaataaa |
42476891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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