View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9331-LTR4-TNT-insertion-5 (Length: 558)
Name: F9331-LTR4-TNT-insertion-5
Description: F9331-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9331-LTR4-TNT-insertion-5 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 536; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 9 - 548
Target Start/End: Original strand, 6932700 - 6933239
Alignment:
| Q |
9 |
agtccggtgctaagatgcaataatcatttgttaaagttccttttgttttaatgtatttgtttcattttttatcaacccctggttttaccatttatgaata |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6932700 |
agtccggtgctaagatgcaataatcatttgttaaagttccttttgttttaatgtatttgtttcattttttatcaacccctggttttaccatttatgaata |
6932799 |
T |
|
| Q |
109 |
aatgagaaaaaatatttagcagttctatttagtagtgtgtcttctattgttttgttttgtcacttgcattttttgtgctttccttattatgaaatttatg |
208 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6932800 |
aatgagaaaaaatatttagcagttctatttagtagtgtgtcttctattgttttgttttgtcacttgcattttttgtgctttccttattatgaaatttatg |
6932899 |
T |
|
| Q |
209 |
aaattgttgtaggggcctgagaaaacatataatgaagatacgaaaaaggacgataataatcactttggtaatctcacaaccgttgatcagggtgttccaa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6932900 |
aaattgttgtaggggcctgagaaaacatataatgaagatacgaaaaaggacgataataatcactttggtaatctcacaaccgttgatcagggtgttccaa |
6932999 |
T |
|
| Q |
309 |
cgattgatccactgagtccttattatgttcatccaagcgatggtccgacctcagtttcaattactcctgtgcttaccggatccaattaccatagttgggc |
408 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6933000 |
cgattgatccactgagtccttattatgttcatccaagcgatggtccgacctcagtttcaattactcctgtgcttaccggatccaattaccatagttgggc |
6933099 |
T |
|
| Q |
409 |
tcggtctatgcgtagggctttgggtggaaaaatgaaatatgatttcgttgacggttctattccggttcctaccgatcttgatccattattccgtgcttgg |
508 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6933100 |
tcggtctatgcgtagggctttgggtggaaaaatgaaatatgatttcgttgacggttctattccggttcctaccgatcttgatccattattccgtgcttgg |
6933199 |
T |
|
| Q |
509 |
tcgcgttgtaatatgcttgtgcattcatggatcacgaatt |
548 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
6933200 |
tcgcgttgtaatatgcttgtgcattcatggatcatgaatt |
6933239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 8369913 - 8370010
Alignment:
| Q |
18 |
ctaagatgcaataatcatttgttaaagttccttttgttttaatgtatttgtttcattttttatcaacccctggttttaccatttatgaataaatgagaa |
116 |
Q |
| |
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|||| |||||||||||||||||||| |||||||||| || ||||| |||||||||||| ||| | | || || ||| |||||||| ||||| ||||||| |
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|
| T |
8369913 |
ctaaaatgcaataatcatttgttaaggttccttttgattgaatgtgtttgtttcatttgtta-ctaaccttgctttgaccatttaagaatatatgagaa |
8370010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 142; Significance: 3e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 296 - 548
Target Start/End: Complemental strand, 18436270 - 18436015
Alignment:
| Q |
296 |
cagggtgttccaacgattgatccactgagtccttattatgttcatccaagcgatggtccgacctcagtttcaattactcctgtgcttaccggatccaatt |
395 |
Q |
| |
|
||||||| |||| | ||||||||| |||||||||||||| ||||||||||||||||| ||||| ||||||||||||||| | ||||| || ||||||| |
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| T |
18436270 |
cagggtgctccagcaattgatccatcaagtccttattatgtccatccaagcgatggtcctacctcggtttcaattactcctctacttactggttccaatt |
18436171 |
T |
|
| Q |
396 |
accatagttgggctcggtctatgcgtagggctttgggtggaaaaatgaaatatgatttcgttgacggttctattccggttcctaccgatc---ttgatcc |
492 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| | ||||| |
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| T |
18436170 |
accatagttgggctcggtctatgcgtagggctttgggtggaaaaatgaaatatgatttcgttgatggttctattccggttcctacagatccattcgatcc |
18436071 |
T |
|
| Q |
493 |
attattccgtgcttggtcgcgttgtaatatgcttgtgcattcatggatcacgaatt |
548 |
Q |
| |
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| ||| ||||||||| ||||||| |||||||| || || |||||||||| ||||| |
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| T |
18436070 |
aacatttcgtgcttggacgcgttgcaatatgctcgttcactcatggatcatgaatt |
18436015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 131; Significance: 1e-67; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 323 - 548
Target Start/End: Original strand, 30151783 - 30152011
Alignment:
| Q |
323 |
agtccttattatgttcatccaagcgatggtccgacctcagtttcaattactcctgtgcttaccggatccaattaccatagttgggctcggtctatgcgta |
422 |
Q |
| |
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|||||||||||||| |||| |||||||||||| |||||||||||||||||||| | ||||| || ||||||||||||||||||||||||||||||| || |
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| T |
30151783 |
agtccttattatgtccatctaagcgatggtcctacctcagtttcaattactcccctacttactggttccaattaccatagttgggctcggtctatgcata |
30151882 |
T |
|
| Q |
423 |
gggctttgggtggaaaaatgaaatatgatttcgttgacggttctattccggttcctaccgatc---ttgatccattattccgtgcttggtcgcgttgtaa |
519 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| | |||||| ||| ||||||||| ||||||| || |
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| T |
30151883 |
gggctttgggtggaaaaatgaaatatgatttcgttgatggttctattccggttcctacagatccattcgatccaacatttcgtgcttggacgcgttgcaa |
30151982 |
T |
|
| Q |
520 |
tatgcttgtgcattcatggatcacgaatt |
548 |
Q |
| |
|
|||||| || || |||||||||| ||||| |
|
|
| T |
30151983 |
tatgctcgttcactcatggatcatgaatt |
30152011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 459
Target Start/End: Complemental strand, 25422989 - 25422915
Alignment:
| Q |
385 |
cggatccaattaccatagttgggctcggtctatgcgtagggctttgggtggaaaaatgaaatatgatttcgttga |
459 |
Q |
| |
|
|||||||||||| ||| ||||||||| || |||||||| |||||||||| |||||||||| ||| |||||||| |
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| T |
25422989 |
cggatccaattatcattcttgggctcgttccatgcgtagaactttgggtgggaaaatgaaatttgaattcgttga |
25422915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 512 - 548
Target Start/End: Original strand, 26129539 - 26129575
Alignment:
| Q |
512 |
cgttgtaatatgcttgtgcattcatggatcacgaatt |
548 |
Q |
| |
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|||||||| |||||||||||||||||||||| ||||| |
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|
| T |
26129539 |
cgttgtaacatgcttgtgcattcatggatcatgaatt |
26129575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 512 - 548
Target Start/End: Original strand, 16254819 - 16254855
Alignment:
| Q |
512 |
cgttgtaatatgcttgtgcattcatggatcacgaatt |
548 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||| |
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|
| T |
16254819 |
cgttgtaacatgcttgtgcattcatggatcatgaatt |
16254855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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