View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9331-LTR4-TNT-insertion-6 (Length: 312)
Name: F9331-LTR4-TNT-insertion-6
Description: F9331-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9331-LTR4-TNT-insertion-6 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 10 - 302
Target Start/End: Complemental strand, 41324656 - 41324364
Alignment:
| Q |
10 |
gcattaaaggtacattttcaattctgaaccagtactatagtatcctctatgtcctttaaattatgaacaaaatttgattgtaataatgcagagaatacac |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41324656 |
gcattaaaggtacattttcaattctgaaccagtactatagtatcctctatgtcctttaaattatgaacaaaatttgattgtaataatgcagagaatacac |
41324557 |
T |
|
| Q |
110 |
aagataaaatatgctgtgaaaaagataatacttaggacattgaagcttctcttttggggtatactattgcaaggtaaacaaaactcctcaaactcactat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41324556 |
aagataaaatatgctgtgaaaaagataatacttaggacattgaagcttctcttttggggtatactattgcaaggtaaacaaaactcctcaaactcactat |
41324457 |
T |
|
| Q |
210 |
atatacannnnnnnaagcatccttctagatatactaagtagaaatcacttccaaatttcaagcnnnnnnngagttgcataaataacaaaatta |
302 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
41324456 |
atatacatttttttaagcatccttctagatatactaagtagaaatcacttccaaatttcaagcaaaaaaagagttgcataaataacaagatta |
41324364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 109 - 214
Target Start/End: Complemental strand, 41309859 - 41309754
Alignment:
| Q |
109 |
caagataaaatatgctgtgaaaaagataatacttaggacattgaagcttctcttttggggtatactattgcaaggtaaacaaaactcctcaaactcacta |
208 |
Q |
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||||||||| ||| | ||||| |||||||| || ||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
41309859 |
caagataaattataccgtgaagaagataattctcaggacattgaaacttctcttttggggtatacttttgcaaggtaaacaaaactcttcaaactcacta |
41309760 |
T |
|
| Q |
209 |
tatata |
214 |
Q |
| |
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||||| |
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| T |
41309759 |
aatata |
41309754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 188
Target Start/End: Original strand, 27656712 - 27656779
Alignment:
| Q |
121 |
tgctgtgaaaaagataatacttaggacattgaagcttctcttttggggtatactattgcaaggtaaac |
188 |
Q |
| |
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||||||||| |||||||| |||||||||| ||||||||||| |||||| |||| ||||||||||||| |
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| T |
27656712 |
tgctgtgaagaagataatttttaggacattaaagcttctcttctggggtttacttttgcaaggtaaac |
27656779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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