View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9331-LTR4-TNT-insertion-8 (Length: 410)
Name: F9331-LTR4-TNT-insertion-8
Description: F9331-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9331-LTR4-TNT-insertion-8 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 10 - 402
Target Start/End: Complemental strand, 27145644 - 27145252
Alignment:
| Q |
10 |
cgcagatgatcttagcatttttaatatttaattagttgagttagttaacctttgcttatgtttgagaccatcaaatatgattttttgttgtttatatttg |
109 |
Q |
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| T |
27145644 |
cgcagatgatcttagcatttttaatatttaattagttgagttagttaacctttgcttatgtttgagaccatcaaatatgattttttgttgtttatatttg |
27145545 |
T |
|
| Q |
110 |
agattagagagaataagtatctaaattatgattcagtcattcatctcactcatttctcacaagcatttagatatgttggtatttctttccattttcttaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27145544 |
agattagagagaataagtatctaaattatgattcagtcattcatctcactcatttctcacaagcatttagatatgttggtatttctttccattttcttaa |
27145445 |
T |
|
| Q |
210 |
tgtatgtgtattgagacgttgatataatattggggtgttgaattcctcttgtacttctaaattctaataatatattttttacttatatagatgaaagttg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27145444 |
tgtatgtgtattgagacgttgatataatattggggtgttgaattcctcttgtacttctaaattctaataatatattttttacttatatagatgaaagttg |
27145345 |
T |
|
| Q |
310 |
cacattaaatgcttaattgaggagatttgttaaaattgcatgcatgtggaaagaattcagtaactttcaaccatattaacagaaaaggaatta |
402 |
Q |
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| T |
27145344 |
cacattaaatgcttaattgaggagatttgttaaaattgcatgcatgtggaaagaattcagtaactttcaaccatattaacagaaaaggaatta |
27145252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 312 - 401
Target Start/End: Complemental strand, 27247859 - 27247766
Alignment:
| Q |
312 |
cattaaatgcttaattgaggagatttgttaa-aattgcatgc---atgtggaaagaattcagtaactttcaaccatattaacagaaaaggaatt |
401 |
Q |
| |
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|
| T |
27247859 |
cattaaatgcttaattgaggaggtttgttaagaattgtatgtgaaactttggaagcattcagcaactttcaaccatattaacagaaaaggaatt |
27247766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 372 - 401
Target Start/End: Original strand, 14904797 - 14904826
Alignment:
| Q |
372 |
actttcaaccatattaacagaaaaggaatt |
401 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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|
| T |
14904797 |
actttcaaccatattaacagaaaaggaatt |
14904826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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