View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9332-LTR4-TNT-insertion-2 (Length: 392)
Name: F9332-LTR4-TNT-insertion-2
Description: F9332-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9332-LTR4-TNT-insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 10 - 383
Target Start/End: Complemental strand, 15939233 - 15938860
Alignment:
| Q |
10 |
gcaatgtctctagtgatatctttactatgcacatgttcaacaatgaatatcggctgaatatcgatattccataagcaaaactcatttagaatttaattta |
109 |
Q |
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| T |
15939233 |
gcaatgtctctagtgatatctttactatgcacatgttcaacaatgaatatcggctgaatatcgatattccataagcaaaactcatttagaatttaattta |
15939134 |
T |
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| Q |
110 |
atttcaaaaaattaatataaaaatatagcatgccattgaattattgaatgatggatatatatactcatccaaatttaatagtatcactaattcactatgt |
209 |
Q |
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| T |
15939133 |
atttcaaaaaattaatataaaaatatagcatgccattgaattattgaatgatggatatatatactcatccaaatttaatagtatcactaattcactatgt |
15939034 |
T |
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| Q |
210 |
ttgataataaataaataaattttatgagaattaaaatgatgaataattaactttgggatgcgacctaaaagtttgaagaaagctacaagaaatttggatt |
309 |
Q |
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| T |
15939033 |
ttgataataaataaataaattttatgagaattaaaatgatgaataattaactttgggatgcgacctaaaagtttgaagaaagctacaagaaatttggatt |
15938934 |
T |
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| Q |
310 |
acgcctaactactcgccgttgtcagaaaatgggtttggtgattcaacacttcagcatgacttcttgatcaattg |
383 |
Q |
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| T |
15938933 |
acgcctaactactcgccgttgtcagaaaatgggtttggtgattcaacacttcagcatgacttcttgatcaattg |
15938860 |
T |
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