View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9332-LTR4-TNT-insertion-6 (Length: 724)
Name: F9332-LTR4-TNT-insertion-6
Description: F9332-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9332-LTR4-TNT-insertion-6 |
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Alignment Details
Target: chr4 (Bit Score: 412; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 296 - 715
Target Start/End: Complemental strand, 36942404 - 36941985
Alignment:
| Q |
296 |
gacccagttacaaagtctccatcttcaaacaaaaaggccaagacaggactagcagtgggattgggaaccggtggatttgttctcattggtgtatttggtt |
395 |
Q |
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| T |
36942404 |
gacccagttacaaagtctccatcttcaaacaaaaaggccaagacaggactagcagtgggattgggaaccggtggatttgttctcattggtgtatttggtt |
36942305 |
T |
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| Q |
396 |
ttatttgggttctcttgtggaggaaaagaagcgaacaggaagatggtgaatttcaagagtacatgggtgaagatttcggaagagggacaggacccaagaa |
495 |
Q |
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| T |
36942304 |
ttatttgggttttcttgtggaggaaaagaagagaacaggaagatggtgaatttcaagagtacatgggtgaagatttcggaagagggacaggacccaagaa |
36942205 |
T |
|
| Q |
496 |
gtatacatatgcagaattagcaaatgcagctaataatttcaaagatgagcataagctaggacaaggaggatttggaggtgtttatagaggctttctaaaa |
595 |
Q |
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| T |
36942204 |
gtatacatatgcagaattagcaaatgcagctaataatttcaaagatgagcataagctaggacaaggaggatttggaggtgtttatagaggctttctaaaa |
36942105 |
T |
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| Q |
596 |
gacacaaaatcttatgttgctattaagagtgtgtcagaagattctcatcaagggataaaggaatttgcatcagaagtaacgataattagcaaattaaggc |
695 |
Q |
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| T |
36942104 |
gacacaaaatcttatgttgctattaagagtgtgtcagaagattctcatcaagggataaaggaatttgcatcagaagtaacgataattagcaaattaaggc |
36942005 |
T |
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| Q |
696 |
atagaaatctagtgcaattg |
715 |
Q |
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| T |
36942004 |
atagaaatctagtgcaattg |
36941985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 9 - 264
Target Start/End: Complemental strand, 36942691 - 36942436
Alignment:
| Q |
9 |
catggttggctgatatcaaacaaggtagactcaatgaggcttggatcaattacaatgctagttcattaaatctaagtgttttattcactggttttaataa |
108 |
Q |
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| T |
36942691 |
catggttggctgatatcaaacaaggtagactcaatgaggcttggatcaattacaatgctagttcattaaatctaagtgttttattcactggttttaataa |
36942592 |
T |
|
| Q |
109 |
cgtaacttctagcattgtgaatcaacatttatcttccatagttgatcttagactttatctgccagaatttgttactattggcttctcagctgccactgga |
208 |
Q |
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| T |
36942591 |
cgtaacttctagcattgtgaatcaacatttatcttccatagttgatcttagactttatctgccagaatttgttactattggcttctcagctgccactgga |
36942492 |
T |
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| Q |
209 |
aatcgcactgctgtacacagtatctcttcatgggattttagctcaactttagaagg |
264 |
Q |
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| T |
36942491 |
aatcgcactgctgtacacagtatctcttcatgggattttagctcaactttagaagg |
36942436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 432 - 715
Target Start/End: Original strand, 36938850 - 36939133
Alignment:
| Q |
432 |
aggaagatggtgaatttcaagagtacatgggtgaagatttcggaagagggacaggacccaagaagtatacatatgcagaattagcaaatgcagctaataa |
531 |
Q |
| |
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||||||||||||||||| ||||||||||||| || ||||| ||||| ||| ||||||| | ||||||||||||||||||||||||| | ||||||||| | |
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| T |
36938850 |
aggaagatggtgaatttgaagagtacatgggagaggattttggaaggggggcaggacctaggaagtatacatatgcagaattagcacacgcagctaatga |
36938949 |
T |
|
| Q |
532 |
tttcaaagatgagcataagctaggacaaggaggatttggaggtgtttatagaggctttctaaaagacacaaaatcttatgttgctattaagagtgtgtca |
631 |
Q |
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| T |
36938950 |
tttcaaagacgagtataagctaggacaaggaggatttggaggtgtttatagaggttttcttaaagacacaaaatcttatgttgctgttaagagggtgtca |
36939049 |
T |
|
| Q |
632 |
gaagattctcatcaagggataaaggaatttgcatcagaagtaacgataattagcaaattaaggcatagaaatctagtgcaattg |
715 |
Q |
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| T |
36939050 |
gaagattcacatcaaggaataaaggagttcgcatcagaagtaacaattattagcaaattaaggcatagaaatctagtgcaattg |
36939133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 341 - 390
Target Start/End: Original strand, 36938750 - 36938799
Alignment:
| Q |
341 |
ggactagcagtgggattgggaaccggtggatttgttctcattggtgtatt |
390 |
Q |
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||||||||||||||||| |||| |||||||||||| | ||||||||||| |
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| T |
36938750 |
ggactagcagtgggattaggaattggtggatttgttttgattggtgtatt |
36938799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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