View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9333-LTR4-TNT-insertion-1 (Length: 765)
Name: F9333-LTR4-TNT-insertion-1
Description: F9333-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9333-LTR4-TNT-insertion-1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 422; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 9 - 430
Target Start/End: Original strand, 36856675 - 36857096
Alignment:
| Q |
9 |
tggcagctccaattcactcgaattttgcatttactagcatgagagaacaacttcttgatttgagaacagtatggatgagagcatggttcagccttagttg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36856675 |
tggcagctccaattcactcgaattttgcatttactagcatgagagaacaacttcttgatttgagaacagtatggatgagagcatggttcagccttagttg |
36856774 |
T |
|
| Q |
109 |
cgcggcattgagatgcattcagcagttcttaccagcaccggtttctgatttaactcgtcttgattcaacttgtgttgatggaaatcagcatctcgctcct |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36856775 |
cgcggcattgagatgcattcagcagttcttaccagcaccggtttctgatttaactcgtcttgattcaacttgtgttgatggaaatcagcatctcgctcct |
36856874 |
T |
|
| Q |
209 |
tatattctggacaacaattatcacatacttttcaaactgccagcagaatagaattctttagatgatagaggatcctcattcaggaatacttggcgtggcg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36856875 |
tatattctggacaacaattatcacatacttttcaaactgccagcagaatagaattctttagatgatagaggatcctcattcaggaatacttggcgtggcg |
36856974 |
T |
|
| Q |
309 |
gggtgtgtcaaactgaaaagatggacacggctgaaacagtacagaaccggccaaaacacaagcagcatggcaaaacaaagaccaccacaaaataggaaag |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36856975 |
gggtgtgtcaaactgaaaagatggacacggctgaaacagtacagaaccggccaaaacacaagcagcatggcaaaacaaagaccaccacaaaataggaaag |
36857074 |
T |
|
| Q |
409 |
ctaacaggctcctaagaagatg |
430 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
36857075 |
ctaacaggctcctaagaagatg |
36857096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 501 - 755
Target Start/End: Original strand, 36857167 - 36857421
Alignment:
| Q |
501 |
gagctatctacccaaacactctctaggattccaacaccatttatagaacaaacaagacggaatttttagccggttcaaactccattgccacgagagaacc |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36857167 |
gagctatctacccaaacactctctaggattccaacaccatttatagaacaaacaagacggaatttttagccggttcaaactccattgccacgagagaacc |
36857266 |
T |
|
| Q |
601 |
ttgacttcctccaccatttcatcaacctctacttgaccttattgttaaagatccagtcatttctcgacttccaaataacccaaattgccgaaagccaaat |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36857267 |
ttgacttcctccaccatttcatcaacctctacttgaccttattgttaaagatccagtcatttctcgacttccaaataacccaaattgccgaaagccaaat |
36857366 |
T |
|
| Q |
701 |
taaccaagcccctctcttcaatttcttcaaatgcatctcaccagtccaaccatta |
755 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
36857367 |
taaccaagcccctctcttcaatttcttcaaatgcatctcaccagaccaaccatta |
36857421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 36846293 - 36846410
Alignment:
| Q |
9 |
tggcagctccaattcactcgaattttgcatttactagcatgagagaacaacttcttgatttgagaacagtatggatgagagcatggttcagccttagttg |
108 |
Q |
| |
|
||||||| || |||||||||||||| || ||||| ||||||||||| | ||||||||| |||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
36846293 |
tggcagcccccattcactcgaatttcacacttactggcatgagagaatagcttcttgatctgagaacagtttggatgagagcatggttcagacttagttg |
36846392 |
T |
|
| Q |
109 |
cgcggcattgagatgcat |
126 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
36846393 |
cccggcattgagatgcat |
36846410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 616 - 725
Target Start/End: Original strand, 27895122 - 27895229
Alignment:
| Q |
616 |
atttcatcaacctctacttgaccttattgttaaagatccagtcatttctcgacttccaaataacccaaattgccgaaagccaaattaaccaagcccctct |
715 |
Q |
| |
|
||||||||||| || ||| ||||| ||||||||||||| |||||||||||| || ||||||||||||||| ||||| |||||||||||||| ||||| | |
|
|
| T |
27895122 |
atttcatcaacatc--cttaaccttgttgttaaagatcccgtcatttctcgattttcaaataacccaaattaccgaatgccaaattaaccaaaccccttt |
27895219 |
T |
|
| Q |
716 |
cttcaatttc |
725 |
Q |
| |
|
|||||||||| |
|
|
| T |
27895220 |
cttcaatttc |
27895229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 6160743 - 6160848
Alignment:
| Q |
9 |
tggcagctccaattcactcgaattttgcatttactagcatgagagaacaacttcttgatttgagaacagtatggatgagagcatggttcagccttagttg |
108 |
Q |
| |
|
||||||| || ||| | |||||||||||| ||||| |||||| |||||||||||||||||| ||| |||| ||||||||||||||| ||||| ||| ||| |
|
|
| T |
6160743 |
tggcagcccccatttaatcgaattttgcacttactggcatgatagaacaacttcttgatttcagatcagtttggatgagagcatggctcagcattacttg |
6160842 |
T |
|
| Q |
109 |
cgcggc |
114 |
Q |
| |
|
| |||| |
|
|
| T |
6160843 |
cccggc |
6160848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 115; Significance: 5e-58; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 141 - 327
Target Start/End: Complemental strand, 6670421 - 6670235
Alignment:
| Q |
141 |
cagcaccggtttctgatttaactcgtcttgattcaacttgtgttgatggaaatcagcatctcgctccttatattctggacaacaattatcacatactttt |
240 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
6670421 |
cagcaccggtttcttatttaactcatcttgattcaacttgtgttgatggcaatcagcatctctctccttatattctggaaaacaattatcacgtactttt |
6670322 |
T |
|
| Q |
241 |
caaactgccagcagaatagaattctttagatgatagaggatcctcattcaggaatacttggcgtggcggggtgtgtcaaactgaaaa |
327 |
Q |
| |
|
||||||| | ||||| | | |||||||||||||||| ||| ||||| | |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6670321 |
caaactgtcgacagaacattactctttagatgatagagaatcatcattgatgaatacttggcgtggcggagtgtgtcaaactgaaaa |
6670235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 6670566 - 6670461
Alignment:
| Q |
20 |
attcactcgaattttgcatttactagcatgagagaacaacttcttgatttgagaacagtatggatgagagcatggttcagccttagttgcgcggcattga |
119 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6670566 |
attcactcgaattttgcatttaccagcatgagagaacatcttcttg-tttgagaagagtatggatgagagcatggttcagccttagttgcgcggcattga |
6670468 |
T |
|
| Q |
120 |
gatgcat |
126 |
Q |
| |
|
|| |||| |
|
|
| T |
6670467 |
gacgcat |
6670461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 508 - 728
Target Start/End: Complemental strand, 7898543 - 7898325
Alignment:
| Q |
508 |
ctacccaaacactctctaggattccaacaccatttatagaacaaacaagacggaatttttagccggttcaaactccattgccacgagagaaccttgactt |
607 |
Q |
| |
|
||||| || |||||||| |||||||||||||||| ||| || || ||||| | ||||| || | ||||||||||| | |||| |||| || || | | |
|
|
| T |
7898543 |
ctacctaagcactctctcggattccaacaccattcataaaataagcaagatgagattttaagtctattcaaactccaattccacaagagtactttaatct |
7898444 |
T |
|
| Q |
608 |
cctccaccatttcatcaacctctacttgaccttattgttaaagatccagtcatttctcgacttccaaataacccaaattgccgaaagccaaattaaccaa |
707 |
Q |
| |
|
|||| ||||||||||||||||| ||| ||||| | || || |||| ||||||||| || |||||||| |||||||| ||||| ||||||||| |||| |
|
|
| T |
7898443 |
cctcaaccatttcatcaacctc--cttaaccttgtcattgaaaatccggtcatttctagaattccaaattacccaaataaccgaatgccaaattagccaa |
7898346 |
T |
|
| Q |
708 |
gcccctctcttcaatttcttc |
728 |
Q |
| |
|
||||||||| || |||||||| |
|
|
| T |
7898345 |
gcccctctcctccatttcttc |
7898325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 10 - 88
Target Start/End: Original strand, 6771679 - 6771757
Alignment:
| Q |
10 |
ggcagctccaattcactcgaattttgcatttactagcatgagagaacaacttcttgatttgagaacagtatggatgaga |
88 |
Q |
| |
|
|||||| || |||||||||||||||||| |||| ||||||||||||||||||||||| || ||| ||| ||||||||| |
|
|
| T |
6771679 |
ggcagcccccattcactcgaattttgcacttacaggcatgagagaacaacttcttgatctgtgaatagtttggatgaga |
6771757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 110
Target Start/End: Complemental strand, 6681369 - 6681284
Alignment:
| Q |
25 |
ctcgaattttgcatttactagcatgagagaacaacttcttgatttgagaacagtatggatgagagcatggttcagccttagttgcg |
110 |
Q |
| |
|
||||||||| || ||||| |||||| |||||| |||||||||||||||||||| ||||| ||||||||| ||||| ||| ||||| |
|
|
| T |
6681369 |
ctcgaatttcacacttactggcatgatagaacagcttcttgatttgagaacagtttggataagagcatggctcagcattacttgcg |
6681284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 3e-47; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 24 - 128
Target Start/End: Original strand, 2943769 - 2943873
Alignment:
| Q |
24 |
actcgaattttgcatttactagcatgagagaacaacttcttgatttgagaacagtatggatgagagcatggttcagccttagttgcgcggcattgagatg |
123 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2943769 |
actcgaatttttcatttactagcatgagagaacaacttcttgatttgagaacagtatggatgagagtatggttcagccttagttgcgcggcattgagatg |
2943868 |
T |
|
| Q |
124 |
cattc |
128 |
Q |
| |
|
||||| |
|
|
| T |
2943869 |
cattc |
2943873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 46524120 - 46524003
Alignment:
| Q |
9 |
tggcagctccaattcactcgaattttgcatttactagcatgagagaacaacttcttgatttgagaacagtatggatgagagcatggttcagccttagttg |
108 |
Q |
| |
|
||||||| || |||||||||||||| ||| |||| ||||||||||||| |||||||||||||||||||| |||||||||||| |||||||| ||| || |
|
|
| T |
46524120 |
tggcagccccgattcactcgaatttcgcacctactggcatgagagaacagcttcttgatttgagaacagtttggatgagagcaaggttcagcattatctg |
46524021 |
T |
|
| Q |
109 |
cgcggcattgagatgcat |
126 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
46524020 |
cacggcattgagatgcat |
46524003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 44 - 126
Target Start/End: Complemental strand, 49883674 - 49883592
Alignment:
| Q |
44 |
agcatgagagaacaacttcttgatttgagaacagtatggatgagagcatggttcagccttagttgcgcggcattgagatgcat |
126 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||| ||||| ||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
49883674 |
agcatgagagaatagcttcttgatttgagaacagtttggataagagcatggttcagcattagttgcgcgacattgagatgcat |
49883592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 132 - 202
Target Start/End: Original strand, 2944846 - 2944917
Alignment:
| Q |
132 |
agttcttaccagcaccggtttctgatttaactcgtcttgattcaa-cttgtgttgatggaaatcagcatctc |
202 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||| |
|
|
| T |
2944846 |
agttcttaccagcactggtttctgatttaactcgtcttgattcaaccttgttttgatggcaatcagcatctc |
2944917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 513 - 587
Target Start/End: Complemental strand, 25355745 - 25355671
Alignment:
| Q |
513 |
caaacactctctaggattccaacaccatttatagaacaaacaagacggaatttttagccggttcaaactccattg |
587 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||| ||||||||| | |||||| | || |||||||||||||| |
|
|
| T |
25355745 |
caaacaatctctaggattccaacaccattcatagtacaaacaagttgaaattttcaacctattcaaactccattg |
25355671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 265 - 326
Target Start/End: Complemental strand, 49883244 - 49883183
Alignment:
| Q |
265 |
tttagatgatagaggatcctcattcaggaatacttggcgtggcggggtgtgtcaaactgaaa |
326 |
Q |
| |
|
|||| ||| ||||||||| ||||| ||||||||||||| ||||| || ||||||||||||| |
|
|
| T |
49883244 |
tttaaatggtagaggatcatcattgaggaatacttggcacggcggagtatgtcaaactgaaa |
49883183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 126
Target Start/End: Complemental strand, 18137187 - 18137141
Alignment:
| Q |
80 |
tggatgagagcatggttcagccttagttgcgcggcattgagatgcat |
126 |
Q |
| |
|
|||||||||||||||||||| |||| || ||||||||||||||||| |
|
|
| T |
18137187 |
tggatgagagcatggttcagaattagctgtgcggcattgagatgcat |
18137141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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