View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9333-LTR4-TNT-insertion-5 (Length: 98)
Name: F9333-LTR4-TNT-insertion-5
Description: F9333-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9333-LTR4-TNT-insertion-5 |
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Alignment Details
Target: chr8 (Bit Score: 82; Significance: 3e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 3e-39
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 13389799 - 13389718
Alignment:
| Q |
8 |
gttaagttaacctgcaagtttttgttgtgttctgttatgaatctaattgctccgcaaccaaaatatttcacttcatcaattg |
89 |
Q |
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| T |
13389799 |
gttaagttaacctgcaagtttttgttgtgttctgttatgaatctaattgctccgcaaccaaaatatttcacttcatcaattg |
13389718 |
T |
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