View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9333-LTR4-TNT-insertion-7 (Length: 223)
Name: F9333-LTR4-TNT-insertion-7
Description: F9333-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9333-LTR4-TNT-insertion-7 |
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Alignment Details
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 8 - 213
Target Start/End: Original strand, 50947131 - 50947337
Alignment:
| Q |
8 |
cgaaactctgttgaaaatcaatgagtacgtgaagaaacatgcatatgccggagataatgaaaaaagtctccgtagttgggaccttgagttcatcgaagtt |
107 |
Q |
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| T |
50947131 |
cgaaactctgttgaaaatcaatgagtacgtgaagaaacatgcatatgccggagataatgaaaaaagtctccgtagttgggaccttgagttcatcgaagtt |
50947230 |
T |
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| Q |
108 |
gatcgccacacactgtttgcgctagtcttggttag-nnnnnnnnnnnnnnnnnnnctcatgtcatatttatattcttacatgtaacatcatgatgttagt |
206 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50947231 |
gatcgccacacactgtttgcgctagtcttggttagttttttttttttctttttttctcatgtcatatttatattcttacatgtaacatcatgatgttagt |
50947330 |
T |
|
| Q |
207 |
ttaatta |
213 |
Q |
| |
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||||||| |
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| T |
50947331 |
ttaatta |
50947337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 10 - 142
Target Start/End: Original strand, 50956645 - 50956777
Alignment:
| Q |
10 |
aaactctgttgaaaatcaatgagtacgtgaagaaacatgcatatgccggagataatgaaaaaagtctccgtagttgggaccttgagttcatcgaagttga |
109 |
Q |
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||||||||||||| |||||||| || || ||||| |||||| |||| ||||||||||||||||||||||||| |||||||||||| |||||| ||||||| |
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| T |
50956645 |
aaactctgttgaagatcaatgaatatgtaaagaagcatgcagatgctggagataatgaaaaaagtctccgtaattgggaccttgaattcatcaaagttga |
50956744 |
T |
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| Q |
110 |
tcgccacacactgtttgcgctagtcttggttag |
142 |
Q |
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| T |
50956745 |
tcgccacactttgtttgccctagtcttggttag |
50956777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 10 - 142
Target Start/End: Original strand, 15854992 - 15855124
Alignment:
| Q |
10 |
aaactctgttgaaaatcaatgagtacgtgaagaaacatgcatatgccggagataatgaaaaaagtctccgtagttgggaccttgagttcatcgaagttga |
109 |
Q |
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||||||||||||| ||||| ||||| || ||||| |||| | |||| |||||||||||||||||||||||| |||||| | ||||||||| ||||||| |
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| T |
15854992 |
aaactctgttgaagatcaaagagtatgtaaagaagcatgaagatgctagagataatgaaaaaagtctccgtatttgggatcaagagttcatcaaagttga |
15855091 |
T |
|
| Q |
110 |
tcgccacacactgtttgcgctagtcttggttag |
142 |
Q |
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|| || ||| ||||||| ||||||||||||| |
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| T |
15855092 |
tcaccgtacattgtttgctatagtcttggttag |
15855124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 71 - 142
Target Start/End: Original strand, 50963653 - 50963724
Alignment:
| Q |
71 |
aagtctccgtagttgggaccttgagttcatcgaagttgatcgccacacactgtttgcgctagtcttggttag |
142 |
Q |
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| T |
50963653 |
aagtctccgttcctgggaccttgagttcatcaaagttgatcgccacacattgtttgccctagtcttggttag |
50963724 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 50963577 - 50963622
Alignment:
| Q |
10 |
aaactctgttgaaaatcaatgagtacgtgaagaaacatgcatatgc |
55 |
Q |
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| T |
50963577 |
aaactctgttgaagatcaatgagtacgtgaagaagcatgcagatgc |
50963622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 9 - 136
Target Start/End: Original strand, 33630411 - 33630538
Alignment:
| Q |
9 |
gaaactctgttgaaaatcaatgagtacgtgaagaaacatgcatatgccggagataatgaaaaaagtctccgtagttgggaccttgagttcatcgaagttg |
108 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||| | || ||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
33630411 |
gaaactctgttgaaaatcaatgagtatgtgaagaaacatgcagaagctggagataatgaaaaaagtctccgtaattgggaccttgagttcatagaagttg |
33630510 |
T |
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| Q |
109 |
atcgccacacactgtttgcgctagtctt |
136 |
Q |
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|||||||| || ||||||| |||||||| |
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| T |
33630511 |
atcgccacgcattgtttgccctagtctt |
33630538 |
T |
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