View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9333-LTR4-TNT-insertion-8 (Length: 420)
Name: F9333-LTR4-TNT-insertion-8
Description: F9333-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9333-LTR4-TNT-insertion-8 |
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Alignment Details
Target: chr3 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 9 - 411
Target Start/End: Complemental strand, 43058502 - 43058100
Alignment:
| Q |
9 |
taggtctgaaactttaatatcttccaaaccattgaagaccagactagtaatatatatataagagctatcttgatcatgtaatgtaatcaaggatccctcc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43058502 |
taggtctgaaactttaatatcttccaaaccattgaagaccagactagtaatatatatataagagctatcttgatcatgtaatgtaatcaaggatccctcc |
43058403 |
T |
|
| Q |
109 |
acactcatatatgtgatccatcatctaatcgccatcttaggccctctttgactactacctatgaacaatggatactacgtcaaacaaaactcgaattgca |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43058402 |
acactcatatatgtgatccatcatctaatcgccatcttaggccctctttgactactacctatgaacaatggatactacgtcaaacaaaactcgaattgca |
43058303 |
T |
|
| Q |
209 |
gttcaaagatacatctacaagatccttccttggatagtgtctagttttgaagacccttgacccttgctaatatagtatcttggttggtagttaatcctca |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43058302 |
gttcaaagatacatctacaagatccttccttggatagtgtctagttttgaagacccttgacccttgctaatatagtatcttggttggtagttaatcctca |
43058203 |
T |
|
| Q |
309 |
accctacttccctagcattgccaaatcaaaaccataaagatatagaaaacccatactatcatgttcctttctcataactaatttctgccatctcaaccaa |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43058202 |
accctacttccctagcattgccaaatcaaaaccataaagatatagaaaacccatactatcatgttcctttctcataactaatttctgccatctcaaccaa |
43058103 |
T |
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| Q |
409 |
ttg |
411 |
Q |
| |
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||| |
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| T |
43058102 |
ttg |
43058100 |
T |
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