View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9334-LTR4-TNT-insertion-1 (Length: 228)
Name: F9334-LTR4-TNT-insertion-1
Description: F9334-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9334-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 8 - 218
Target Start/End: Original strand, 31215040 - 31215250
Alignment:
| Q |
8 |
gtttagaaggttgtgggcttcaaagaaagtttctttggggggtaggtgggaggaaaatttattgggtgaagtggaggagaagttgtcaaccaagaagtaa |
107 |
Q |
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| T |
31215040 |
gtttagaaggttgtgggcttcaaagaaagtttctttggggggtaggtgggaggaaaatttattgggtgaagtggaggagaagttgtcaaccaagaagtaa |
31215139 |
T |
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| Q |
108 |
gggaagtataggtgtgagagatggaaacttcttcatgatgagaatatgtttggaagaaattctagagaaaagatacgggccaagagtgagtaggagggtg |
207 |
Q |
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| T |
31215140 |
gggaagtataggtgtgagagatggaaacttcttcatgatgagaatatgtttggaagaaattctagagaaaagatacgggccaagagtgagtaggagggtg |
31215239 |
T |
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| Q |
208 |
gacttggaatt |
218 |
Q |
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||||||||||| |
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| T |
31215240 |
gacttggaatt |
31215250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 130
Target Start/End: Complemental strand, 22905748 - 22905680
Alignment:
| Q |
62 |
aaatttattgggtgaagtggaggagaagttgtcaaccaagaagtaagggaagtataggtgtgagagatg |
130 |
Q |
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| T |
22905748 |
aaatttgttgggtgaagtggaagagaatttgtcaacccaagagtaagggaggcttaggagtgagagatg |
22905680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 130
Target Start/End: Complemental strand, 22957416 - 22957348
Alignment:
| Q |
62 |
aaatttattgggtgaagtggaggagaagttgtcaaccaagaagtaagggaagtataggtgtgagagatg |
130 |
Q |
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| T |
22957416 |
aaatttgttgggtgaagtggaagagaatttgtcaacccaagagtaagggaggcttaggagtgagagatg |
22957348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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