View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9334-LTR4-TNT-insertion-3 (Length: 82)
Name: F9334-LTR4-TNT-insertion-3
Description: F9334-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9334-LTR4-TNT-insertion-3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 64; Significance: 1e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-28
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 47178774 - 47178837
Alignment:
| Q |
10 |
tcatgtgtttttaaactatttgaactgtgtgattgtcctctctatatgcttgtgcccacaattg |
73 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47178774 |
tcatgtgtttttaaactatttgaactgtgtgattgtcctctctatatgcttgtgcccacaattg |
47178837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 283 times since January 2019
Visitors: 964