View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9334-LTR4-TNT-insertion-4 (Length: 226)
Name: F9334-LTR4-TNT-insertion-4
Description: F9334-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9334-LTR4-TNT-insertion-4 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 9 - 218
Target Start/End: Complemental strand, 975473 - 975264
Alignment:
| Q |
9 |
ttaattcttgtagaaaacaaaatatgttgatgcattgattcaagacaaaagaaaattacaaaaatgaaaattttgtataatcatttccttctttaaaatc |
108 |
Q |
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| T |
975473 |
ttaattcttgtagaaaacaaaatatgttgatgcattgattcaagacaaaagaaaattacaaaaatgaaaattttgtataatcatttccttctttaaaatc |
975374 |
T |
|
| Q |
109 |
attgtatcnnnnnnngatgagtttaattggaatcagaaataccactcatgttgtaacattgattttggtatacatgtagaaaaatgttcgattgatgttg |
208 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
975373 |
attgtatctttttttgatgagtttaattggaatcagaaataccactcatgttgtaacattgattttggtatacatgtagaaaaatgttcgattgatgttg |
975274 |
T |
|
| Q |
209 |
gctcaattgg |
218 |
Q |
| |
|
|||||||||| |
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| T |
975273 |
gctcaattgg |
975264 |
T |
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