View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9334-LTR4-TNT-insertion-6 (Length: 73)
Name: F9334-LTR4-TNT-insertion-6
Description: F9334-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9334-LTR4-TNT-insertion-6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 58; Significance: 4e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-25
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 42078437 - 42078380
Alignment:
| Q |
9 |
gagtaccactccaatgtagtgtgttaagactttgttggtgtatgttacttaccaattg |
66 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42078437 |
gagtaccactccaatgtagtgtgttaagactttgttggtgtatgttacttaccaattg |
42078380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 504 times since January 2019
Visitors: 986